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PI0004777 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0004777
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionReplication protein A subunit
Genome locationchr02:19309591..19310229
RNA-Seq ExpressionPI0004777
SyntenyPI0004777
Gene Ontology termsGO:0006260 - DNA replication (biological process)
GO:0006281 - DNA repair (biological process)
GO:0005694 - chromosome (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003824 - catalytic activity (molecular function)
InterPro domainsIPR012340 - Nucleic acid-binding, OB-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAA2985982.1 Hypothetical predicted protein [Olea europaea subsp. europaea]2.5e-1445.3Show/hide
Query:  LYNDLIKKFNDVIEKGKYYIIRNGKISTVNRRYLNVHDEIEIAFTTSSKIEEIDDMHFCNKEIN-HIDFSSIKSNFE--PQVFDIVGVVISVKLITLIKS
        L+ND I+KF+ +IEKGK YIIRNG    VN +Y NV+DEIE++FTT+ ++EEI +   C K  N  + F+ +  NF     V DI+G+V+ VK   +I  
Subjt:  LYNDLIKKFNDVIEKGKYYIIRNGKISTVNRRYLNVHDEIEIAFTTSSKIEEIDDMHFCNKEIN-HIDFSSIKSNFE--PQVFDIVGVVISVKLITLIKS

Query:  RNSKERFTKKRDIFILD
        +   ER  KKR++ +LD
Subjt:  RNSKERFTKKRDIFILD

CUS11635.1 unnamed protein product [Tuber aestivum]6.5e-0728Show/hide
Query:  IQISLYNDLIKKFNDVIEKGKYYIIRNGKISTVNRRYLNVHDEIEIAFTTSSKIEEI------DDMHFCNKEINHIDFSSIKSNFEPQVFDIVGVVISVK
        I+ + +ND +  F +++++G+ Y I N K++   ++Y N+++E E+AF   ++IE++       D        N I FS ++      + DI+GV+  V 
Subjt:  IQISLYNDLIKKFNDVIEKGKYYIIRNGKISTVNRRYLNVHDEIEIAFTTSSKIEEI------DDMHFCNKEINHIDFSSIKSNFEPQVFDIVGVVISVK

Query:  LITLIKSRNSKERFTKKRDIFILDK
         +  + S+N+++ +T KRD+ ++DK
Subjt:  LITLIKSRNSKERFTKKRDIFILDK

KAG0129521.1 hypothetical protein HOY82DRAFT_505689 [Tuber indicum]9.1e-0930.17Show/hide
Query:  YNDLIKKFNDVIEKGKYYIIRNGKISTVNRRYLNVHDEIEIAFTTSSKIEEIDDMH--FCNKEINHIDFSSIKSNFEPQVFDIVGVVISVKLITLIKSRN
        +ND +  F +V+++G+ Y I N K++   ++Y N++++ E+AF  S++IE+ +D+         N + FS ++S     + D++GV+  V  +  I+S+N
Subjt:  YNDLIKKFNDVIEKGKYYIIRNGKISTVNRRYLNVHDEIEIAFTTSSKIEEIDDMH--FCNKEINHIDFSSIKSNFEPQVFDIVGVVISVKLITLIKSRN

Query:  SKERFTKKRDIFILDK
        +++ +T KRD+ ++DK
Subjt:  SKERFTKKRDIFILDK

XP_002837718.1 hypothetical protein [Tuber melanosporum Mel28]5.9e-0828.45Show/hide
Query:  YNDLIKKFNDVIEKGKYYIIRNGKISTVNRRYLNVHDEIEIAFTTSSKIEEIDDMH--FCNKEINHIDFSSIKSNFEPQVFDIVGVVISVKLITLIKSRN
        +ND +  F +V+++G+ Y I N K++   +++ N++++ E+AF  +++IE+ +D+         N + FS ++S     + D++GV+  V  +  I+S+N
Subjt:  YNDLIKKFNDVIEKGKYYIIRNGKISTVNRRYLNVHDEIEIAFTTSSKIEEIDDMH--FCNKEINHIDFSSIKSNFEPQVFDIVGVVISVKLITLIKSRN

Query:  SKERFTKKRDIFILDK
        +++ +T KRD+ ++DK
Subjt:  SKERFTKKRDIFILDK

XP_022155232.1 replication protein A 70 kDa DNA-binding subunit E-like [Momordica charantia]1.7e-1539.02Show/hide
Query:  VTIQISLYNDLIKKFNDVIEKGKYYIIRNGKISTVNRRYLNVHDEIEIAFTTSSKIEEID-DMHFCNKEINHIDFSSIKSNFEPQVFDIVGVVISVKLIT
        V IQ++L+NDLI+KF D++EKGK Y I +G I  ++ RY+NVH +IEI+ + +SK++EI+ +  F  K+    DF + +S  + Q  D++G V+ +K I 
Subjt:  VTIQISLYNDLIKKFNDVIEKGKYYIIRNGKISTVNRRYLNVHDEIEIAFTTSSKIEEID-DMHFCNKEINHIDFSSIKSNFEPQVFDIVGVVISVKLIT

Query:  LIKSRNSKERFTKKRDIFILDKR
          K+R+    ++KKR++ ++D +
Subjt:  LIKSRNSKERFTKKRDIFILDKR

TrEMBL top hitse value%identityAlignment
A0A132AJ24 Replication protein A subunit2.0e-0628.8Show/hide
Query:  DEVTIQISLYNDLIKKFNDVIEKGKYYIIRNGKISTVNRRYLNVHDEIEIAFTTSSKIEEIDDMHFCNKEINH--IDFSSIKSNFEPQVFDIVGVVISVK
        D   I+++ +ND + +F D+I+K K + +  G + T N+++ +++++ EI    SS I+  +D      ++ +  I+ S+I +  +  V D++GV+ S  
Subjt:  DEVTIQISLYNDLIKKFNDVIEKGKYYIIRNGKISTVNRRYLNVHDEIEIAFTTSSKIEEIDDMHFCNKEINH--IDFSSIKSNFEPQVFDIVGVVISVK

Query:  LITLIKSRNSKERFTKKRDIFILDK
         I  I S+ S +    KR+I I+DK
Subjt:  LITLIKSRNSKERFTKKRDIFILDK

A0A292PY57 Replication protein A subunit3.1e-0728Show/hide
Query:  IQISLYNDLIKKFNDVIEKGKYYIIRNGKISTVNRRYLNVHDEIEIAFTTSSKIEEI------DDMHFCNKEINHIDFSSIKSNFEPQVFDIVGVVISVK
        I+ + +ND +  F +++++G+ Y I N K++   ++Y N+++E E+AF   ++IE++       D        N I FS ++      + DI+GV+  V 
Subjt:  IQISLYNDLIKKFNDVIEKGKYYIIRNGKISTVNRRYLNVHDEIEIAFTTSSKIEEI------DDMHFCNKEINHIDFSSIKSNFEPQVFDIVGVVISVK

Query:  LITLIKSRNSKERFTKKRDIFILDK
         +  + S+N+++ +T KRD+ ++DK
Subjt:  LITLIKSRNSKERFTKKRDIFILDK

A0A317SQL3 Replication protein A subunit1.6e-0625.62Show/hide
Query:  IQISLYNDLIKKFNDVIEKGKYYIIRNGKISTVNRRYLNVHDEIEIAFTTSSKIEEIDDMH--FCNKEINHIDFSSIKSNFEPQVFDIVGVVISVKLITL
        I+ + +ND +  F +V+ +G+ Y I N K++   +++ N++++ E+AF  +++IE+ +D          N + FS ++      + D++GV+  V  +  
Subjt:  IQISLYNDLIKKFNDVIEKGKYYIIRNGKISTVNRRYLNVHDEIEIAFTTSSKIEEIDDMH--FCNKEINHIDFSSIKSNFEPQVFDIVGVVISVKLITL

Query:  IKSRNSKERFTKKRDIFILDK
        ++S+++ + +T KRD+ ++DK
Subjt:  IKSRNSKERFTKKRDIFILDK

A0A6J1DNS8 replication protein A 70 kDa DNA-binding subunit E-like8.2e-1639.02Show/hide
Query:  VTIQISLYNDLIKKFNDVIEKGKYYIIRNGKISTVNRRYLNVHDEIEIAFTTSSKIEEID-DMHFCNKEINHIDFSSIKSNFEPQVFDIVGVVISVKLIT
        V IQ++L+NDLI+KF D++EKGK Y I +G I  ++ RY+NVH +IEI+ + +SK++EI+ +  F  K+    DF + +S  + Q  D++G V+ +K I 
Subjt:  VTIQISLYNDLIKKFNDVIEKGKYYIIRNGKISTVNRRYLNVHDEIEIAFTTSSKIEEID-DMHFCNKEINHIDFSSIKSNFEPQVFDIVGVVISVKLIT

Query:  LIKSRNSKERFTKKRDIFILDKR
          K+R+    ++KKR++ ++D +
Subjt:  LIKSRNSKERFTKKRDIFILDKR

D5GBQ9 Replication protein A subunit2.8e-0828.45Show/hide
Query:  YNDLIKKFNDVIEKGKYYIIRNGKISTVNRRYLNVHDEIEIAFTTSSKIEEIDDMH--FCNKEINHIDFSSIKSNFEPQVFDIVGVVISVKLITLIKSRN
        +ND +  F +V+++G+ Y I N K++   +++ N++++ E+AF  +++IE+ +D+         N + FS ++S     + D++GV+  V  +  I+S+N
Subjt:  YNDLIKKFNDVIEKGKYYIIRNGKISTVNRRYLNVHDEIEIAFTTSSKIEEIDDMH--FCNKEINHIDFSSIKSNFEPQVFDIVGVVISVKLITLIKSRN

Query:  SKERFTKKRDIFILDK
        +++ +T KRD+ ++DK
Subjt:  SKERFTKKRDIFILDK

SwissProt top hitse value%identityAlignment
P22336 Replication factor A protein 11.8e-0424.37Show/hide
Query:  IQISLYNDLIKKFNDVIEKGKYYIIRNGKISTVNRRYLNVHDEIEIAFTTSSKIEE-IDDMHFCNKEINHIDFSSIKSNFEPQVFDIVGVVISVKLITLI
        I+ + +ND   KFN+++++GK Y +   K+     ++ N+    E+     + IEE  D+ +      N I   +I++       D++G++ ++     +
Subjt:  IQISLYNDLIKKFNDVIEKGKYYIIRNGKISTVNRRYLNVHDEIEIAFTTSSKIEE-IDDMHFCNKEINHIDFSSIKSNFEPQVFDIVGVVISVKLITLI

Query:  KSRNSKERFTKKRDIFILD
         SR  K+    +RDI I+D
Subjt:  KSRNSKERFTKKRDIFILD

Q10Q08 Replication protein A 70 kDa DNA-binding subunit B1.5e-0629.46Show/hide
Query:  MDEVTIQISLYNDLIKKFNDVIEKGKYYIIRNGKISTVNRRYLNVHDEIEIAFTTSSKIEEIDDMHFCNKEINHIDFSSIK-SNFEP-----QVFDIVGV
        +D   IQ +++N+  KKF  + E GK Y I  G +   N+++  VH++ E+    ++ +EE +   F    I  I ++ +K     P     ++ D++GV
Subjt:  MDEVTIQISLYNDLIKKFNDVIEKGKYYIIRNGKISTVNRRYLNVHDEIEIAFTTSSKIEEIDDMHFCNKEINHIDFSSIK-SNFEP-----QVFDIVGV

Query:  VISVKLITLIKSRNSKERFTKKRDIFILD
        V SV   TL   R        KRDI + D
Subjt:  VISVKLITLIKSRNSKERFTKKRDIFILD

Q23696 Replication factor A 51 kDa subunit4.8e-0521.01Show/hide
Query:  DEVTIQISLYNDLIKKFNDVIEKGKYYIIRNGKISTVNRRYLNVHDEIEIAFTTSSKI----EEIDDMHFCNKEINHIDFSSIKSNFEPQVFDIVGVVIS
        +   I+ +++ND +  F  ++  G+ Y    G++   NRR+ NV+++ E+ F  +S++    ++        +  N +    +K      + D++GVV+ 
Subjt:  DEVTIQISLYNDLIKKFNDVIEKGKYYIIRNGKISTVNRRYLNVHDEIEIAFTTSSKI----EEIDDMHFCNKEINHIDFSSIKSNFEPQVFDIVGVVIS

Query:  VKLITLIKSRNSKERFTKK
        V  I+ I  +++     K+
Subjt:  VKLITLIKSRNSKERFTKK

Q6YZ49 Replication protein A 70 kDa DNA-binding subunit A1.5e-0628.93Show/hide
Query:  IQISLYNDLIKKFNDVIEKGKYYIIRNGKISTVNRRYLNVHDEIEIAFTTSSKIEEIDDMHFCNKEINHIDFSSIKSNFEPQ---VFDIVGVVISVKLIT
        I+++ +N L+ +F +V+E GK Y++  G +    + Y ++++E EI     S ++   D +  +      DF  I    + Q   + DI+GVV SV   T
Subjt:  IQISLYNDLIKKFNDVIEKGKYYIIRNGKISTVNRRYLNVHDEIEIAFTTSSKIEEIDDMHFCNKEINHIDFSSIKSNFEPQ---VFDIVGVVISVKLIT

Query:  LIKSRNSKERFTKKRDIFILD
         I+ +N  E  T+KR + + D
Subjt:  LIKSRNSKERFTKKRDIFILD

Q9SKI4 Replication protein A 70 kDa DNA-binding subunit A1.4e-0426.45Show/hide
Query:  IQISLYNDLIKKFNDVIEKGKYYIIRNGKISTVNRRYLNVHDEIEIAFTTSSKIE--EIDDMHFCNKEINHIDFSSIKSNFEPQVFDIVGVVISVKLITL
        I+++ +N L+ +F DV E GK Y+I  G +    + + ++ +E EI   ++S +E    +D     ++ +    S I++     + D++GVV SV     
Subjt:  IQISLYNDLIKKFNDVIEKGKYYIIRNGKISTVNRRYLNVHDEIEIAFTTSSKIE--EIDDMHFCNKEINHIDFSSIKSNFEPQVFDIVGVVISVKLITL

Query:  IKSRNSKERFTKKRDIFILDK
        I  +N  E  T +R + + D+
Subjt:  IKSRNSKERFTKKRDIFILDK

Arabidopsis top hitse value%identityAlignment
AT2G06510.1 replication protein A 1A1.0e-0526.45Show/hide
Query:  IQISLYNDLIKKFNDVIEKGKYYIIRNGKISTVNRRYLNVHDEIEIAFTTSSKIE--EIDDMHFCNKEINHIDFSSIKSNFEPQVFDIVGVVISVKLITL
        I+++ +N L+ +F DV E GK Y+I  G +    + + ++ +E EI   ++S +E    +D     ++ +    S I++     + D++GVV SV     
Subjt:  IQISLYNDLIKKFNDVIEKGKYYIIRNGKISTVNRRYLNVHDEIEIAFTTSSKIE--EIDDMHFCNKEINHIDFSSIKSNFEPQVFDIVGVVISVKLITL

Query:  IKSRNSKERFTKKRDIFILDK
        I  +N  E  T +R + + D+
Subjt:  IKSRNSKERFTKKRDIFILDK

AT2G06510.2 replication protein A 1A1.0e-0526.45Show/hide
Query:  IQISLYNDLIKKFNDVIEKGKYYIIRNGKISTVNRRYLNVHDEIEIAFTTSSKIE--EIDDMHFCNKEINHIDFSSIKSNFEPQVFDIVGVVISVKLITL
        I+++ +N L+ +F DV E GK Y+I  G +    + + ++ +E EI   ++S +E    +D     ++ +    S I++     + D++GVV SV     
Subjt:  IQISLYNDLIKKFNDVIEKGKYYIIRNGKISTVNRRYLNVHDEIEIAFTTSSKIE--EIDDMHFCNKEINHIDFSSIKSNFEPQVFDIVGVVISVKLITL

Query:  IKSRNSKERFTKKRDIFILDK
        I  +N  E  T +R + + D+
Subjt:  IKSRNSKERFTKKRDIFILDK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGAGGTAACAATTCAAATTAGTCTATACAATGACTTGATCAAAAAGTTCAATGATGTTATAGAGAAAGGAAAATATTATATCATTCGTAATGGAAAAATCAGTAC
TGTGAATCGTAGATATCTAAATGTTCATGATGAGATTGAAATTGCATTCACAACTAGTAGTAAAATTGAAGAGATCGATGATATGCATTTTTGTAATAAAGAGATTAATC
ATATTGATTTTTCATCCATCAAAAGCAATTTTGAACCTCAAGTTTTTGATATTGTTGGAGTTGTAATAAGTGTAAAACTCATCACTCTTATCAAATCTCGAAATTCGAAA
GAACGGTTTACTAAGAAACGTGATATATTCATTCTTGATAAAAGGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGATGAGGTAACAATTCAAATTAGTCTATACAATGACTTGATCAAAAAGTTCAATGATGTTATAGAGAAAGGAAAATATTATATCATTCGTAATGGAAAAATCAGTAC
TGTGAATCGTAGATATCTAAATGTTCATGATGAGATTGAAATTGCATTCACAACTAGTAGTAAAATTGAAGAGATCGATGATATGCATTTTTGTAATAAAGAGATTAATC
ATATTGATTTTTCATCCATCAAAAGCAATTTTGAACCTCAAGTTTTTGATATTGTTGGAGTTGTAATAAGTGTAAAACTCATCACTCTTATCAAATCTCGAAATTCGAAA
GAACGGTTTACTAAGAAACGTGATATATTCATTCTTGATAAAAGGTAA
Protein sequenceShow/hide protein sequence
MDEVTIQISLYNDLIKKFNDVIEKGKYYIIRNGKISTVNRRYLNVHDEIEIAFTTSSKIEEIDDMHFCNKEINHIDFSSIKSNFEPQVFDIVGVVISVKLITLIKSRNSK
ERFTKKRDIFILDKR