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PI0004781 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0004781
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr10:1165392..1167535
RNA-Seq ExpressionPI0004781
SyntenyPI0004781
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047407.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.8e-4674.79Show/hide
Query:  MTTLLTSFVQGGFVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNVGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALTTNTISFQ
        MTTLLTSFVQG  +KV KCGVCGLVGHPNDKCP+++E+ N++RKYDPH NTYN GWRDNPNLRWGNDNQ+ +QA S+S+NQGTNLED++KAL TNT+SFQ
Subjt:  MTTLLTSFVQGGFVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNVGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALTTNTISFQ

Query:  NEMKQQMSHLTNVISKLEG
         EMKQQM+ LT  ISK++G
Subjt:  NEMKQQMSHLTNVISKLEG

KAA0051761.1 retrotransposon gag protein [Cucumis melo var. makuwa]3.3e-4573.11Show/hide
Query:  MTTLLTSFVQGGFVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNVGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALTTNTISFQ
        MT LLTSFVQG  +KV KCGVCGLVGHPNDKCP+++E+ N+++KYDPH NTYN GWRDNPNLRWGNDNQ+ +QA  +S+NQGTNLED++KAL TNT+SFQ
Subjt:  MTTLLTSFVQGGFVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNVGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALTTNTISFQ

Query:  NEMKQQMSHLTNVISKLEG
         EMKQQM+ LT VISK++G
Subjt:  NEMKQQMSHLTNVISKLEG

TYK10613.1 retrotransposon gag protein [Cucumis melo var. makuwa]4.3e-4573.11Show/hide
Query:  MTTLLTSFVQGGFVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNVGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALTTNTISFQ
        MTTLLTSFVQG   KV KCGVCGLVGHPNDKCP+++E+ N++R+YDPH NTYN+GWRD PNLRWGND Q  +QA S+S+NQGTNLED++KALTTNT+SFQ
Subjt:  MTTLLTSFVQGGFVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNVGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALTTNTISFQ

Query:  NEMKQQMSHLTNVISKLEG
         EMKQQM+ LT  ISK++G
Subjt:  NEMKQQMSHLTNVISKLEG

XP_008465649.1 PREDICTED: uncharacterized protein LOC103503291, partial [Cucumis melo]4.3e-4572.27Show/hide
Query:  MTTLLTSFVQGGFVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNVGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALTTNTISFQ
        MTTLLTSFVQG  +KV KCGVCGLVG+PNDKCP ++E+ N++R+YDPH NTYN+GWRDNPNLRWGNDNQ+ +QA  +S+NQGTNLED++KAL TNT+SFQ
Subjt:  MTTLLTSFVQGGFVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNVGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALTTNTISFQ

Query:  NEMKQQMSHLTNVISKLEG
         +MKQQM+ LT VISK++G
Subjt:  NEMKQQMSHLTNVISKLEG

XP_016902871.1 PREDICTED: uncharacterized protein LOC107991910 [Cucumis melo]3.3e-4573.11Show/hide
Query:  MTTLLTSFVQGGFVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNVGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALTTNTISFQ
        MT LLTSFVQG  +KV KCGVCGLVGHPNDKCP+++E+ N+++KYDPH NTYN GWRDNPNLRWGNDNQ+ +QA  +S+NQGTNLED++KAL TNT+SFQ
Subjt:  MTTLLTSFVQGGFVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNVGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALTTNTISFQ

Query:  NEMKQQMSHLTNVISKLEG
         EMKQQM+ LT VISK++G
Subjt:  NEMKQQMSHLTNVISKLEG

TrEMBL top hitse value%identityAlignment
A0A1S3CQU8 uncharacterized protein LOC1035032912.1e-4572.27Show/hide
Query:  MTTLLTSFVQGGFVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNVGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALTTNTISFQ
        MTTLLTSFVQG  +KV KCGVCGLVG+PNDKCP ++E+ N++R+YDPH NTYN+GWRDNPNLRWGNDNQ+ +QA  +S+NQGTNLED++KAL TNT+SFQ
Subjt:  MTTLLTSFVQGGFVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNVGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALTTNTISFQ

Query:  NEMKQQMSHLTNVISKLEG
         +MKQQM+ LT VISK++G
Subjt:  NEMKQQMSHLTNVISKLEG

A0A1S4E3R2 uncharacterized protein LOC1079919101.6e-4573.11Show/hide
Query:  MTTLLTSFVQGGFVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNVGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALTTNTISFQ
        MT LLTSFVQG  +KV KCGVCGLVGHPNDKCP+++E+ N+++KYDPH NTYN GWRDNPNLRWGNDNQ+ +QA  +S+NQGTNLED++KAL TNT+SFQ
Subjt:  MTTLLTSFVQGGFVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNVGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALTTNTISFQ

Query:  NEMKQQMSHLTNVISKLEG
         EMKQQM+ LT VISK++G
Subjt:  NEMKQQMSHLTNVISKLEG

A0A5D3CFE7 Retrotransposon gag protein2.1e-4573.11Show/hide
Query:  MTTLLTSFVQGGFVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNVGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALTTNTISFQ
        MTTLLTSFVQG   KV KCGVCGLVGHPNDKCP+++E+ N++R+YDPH NTYN+GWRD PNLRWGND Q  +QA S+S+NQGTNLED++KALTTNT+SFQ
Subjt:  MTTLLTSFVQGGFVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNVGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALTTNTISFQ

Query:  NEMKQQMSHLTNVISKLEG
         EMKQQM+ LT  ISK++G
Subjt:  NEMKQQMSHLTNVISKLEG

A0A5D3CRR8 Retrotransposon gag protein8.5e-4774.79Show/hide
Query:  MTTLLTSFVQGGFVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNVGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALTTNTISFQ
        MTTLLTSFVQG  +KV KCGVCGLVGHPNDKCP+++E+ N++RKYDPH NTYN GWRDNPNLRWGNDNQ+ +QA S+S+NQGTNLED++KAL TNT+SFQ
Subjt:  MTTLLTSFVQGGFVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNVGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALTTNTISFQ

Query:  NEMKQQMSHLTNVISKLEG
         EMKQQM+ LT  ISK++G
Subjt:  NEMKQQMSHLTNVISKLEG

A0A5D3DCG3 Retrotransposon gag protein1.6e-4573.11Show/hide
Query:  MTTLLTSFVQGGFVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNVGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALTTNTISFQ
        MT LLTSFVQG  +KV KCGVCGLVGHPNDKCP+++E+ N+++KYDPH NTYN GWRDNPNLRWGNDNQ+ +QA  +S+NQGTNLED++KAL TNT+SFQ
Subjt:  MTTLLTSFVQGGFVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNVGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALTTNTISFQ

Query:  NEMKQQMSHLTNVISKLEG
         EMKQQM+ LT VISK++G
Subjt:  NEMKQQMSHLTNVISKLEG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTACTTTACTAACTTCCTTTGTGCAAGGTGGATTTGTTAAAGTTGCAAAGTGCGGGGTGTGCGGTCTAGTCGGACATCCTAATGACAAGTGCCCTGACTTAGTGGA
AGAGGCAAATGTCATTAGGAAGTACGATCCTCATAGTAACACTTACAACGTCGGTTGGAGAGACAACCCTAATCTAAGATGGGGAAACGACAACCAAAGACCCTCGCAAG
CAACCTCCTCTTCAAACAATCAAGGTACTAATTTGGAAGATTTAGTTAAAGCTCTTACTACTAATACTATCTCTTTTCAGAATGAAATGAAGCAACAAATGTCTCATCTA
ACCAATGTCATAAGCAAATTAGAAGGTAATCCGTCAAGGCGACCGGTCATCGCATCAATTGCATCAGCTTTCTCGGACACTTCCTCAATCCGACCTTCCAAGAAGCGGAC
GGTATCCGGAATTTCCAGCAGGTAG
mRNA sequenceShow/hide mRNA sequence
ATGACTACTTTACTAACTTCCTTTGTGCAAGGTGGATTTGTTAAAGTTGCAAAGTGCGGGGTGTGCGGTCTAGTCGGACATCCTAATGACAAGTGCCCTGACTTAGTGGA
AGAGGCAAATGTCATTAGGAAGTACGATCCTCATAGTAACACTTACAACGTCGGTTGGAGAGACAACCCTAATCTAAGATGGGGAAACGACAACCAAAGACCCTCGCAAG
CAACCTCCTCTTCAAACAATCAAGGTACTAATTTGGAAGATTTAGTTAAAGCTCTTACTACTAATACTATCTCTTTTCAGAATGAAATGAAGCAACAAATGTCTCATCTA
ACCAATGTCATAAGCAAATTAGAAGGTAATCCGTCAAGGCGACCGGTCATCGCATCAATTGCATCAGCTTTCTCGGACACTTCCTCAATCCGACCTTCCAAGAAGCGGAC
GGTATCCGGAATTTCCAGCAGGTAG
Protein sequenceShow/hide protein sequence
MTTLLTSFVQGGFVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNVGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALTTNTISFQNEMKQQMSHL
TNVISKLEGNPSRRPVIASIASAFSDTSSIRPSKKRTVSGISSR