; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0004785 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0004785
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr01:13676747..13683260
RNA-Seq ExpressionPI0004785
SyntenyPI0004785
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN33993.1 retrotransposon gag protein [Cucumis melo subsp. melo]3.7e-6267.2Show/hide
Query:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQGPAQATSSSNNQGSNLEDLVKALATNTISFQ
        MTTLLTSFVQG  +KV KCGVC L+GHPNDKCP+++E+ N++RKYDP+GNTYN+GWRDNPNLRWGND Q   QA  +S+NQG+NLED++KALATNT+SFQ
Subjt:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQGPAQATSSSNNQGSNLEDLVKALATNTISFQ

Query:  NEMKQQISQLTNAISKLEGKGKLLAQPDHANVSAISLRSGKILETPPS-EEKVPSNPTLLVDENKKNEENLENNASSSSSKEVHFP
         EMKQQ++QLT AISK++GKGKL AQPD+ANVSAISLRSGKIL+TP + E+KV S    L  +N+  EE +E N S S+SK    P
Subjt:  NEMKQQISQLTNAISKLEGKGKLLAQPDHANVSAISLRSGKILETPPS-EEKVPSNPTLLVDENKKNEENLENNASSSSSKEVHFP
KAA0047407.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.9e-6367.2Show/hide
Query:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQGPAQATSSSNNQGSNLEDLVKALATNTISFQ
        MTTLLTSFVQG  +KV KCGVCGL+GHPNDKCP+++E+ N++RKYDPHGNTYN+GWRDNPNLRWGND Q   QA S+S+NQG+NLED++KALATNT+SFQ
Subjt:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQGPAQATSSSNNQGSNLEDLVKALATNTISFQ

Query:  NEMKQQISQLTNAISKLEGKGKLLAQPDHANVSAISLRSGKILETPPS-EEKVPSNPTLLVDENKKNEENLENNASSSSSKEVHFP
         EMKQQ++QLT AISK++GKGKL AQ ++ANVSA+SLRSGKIL+TP + E+K  S P  L  +N+  EE +E N S  +SK   FP
Subjt:  NEMKQQISQLTNAISKLEGKGKLLAQPDHANVSAISLRSGKILETPPS-EEKVPSNPTLLVDENKKNEENLENNASSSSSKEVHFP
KAA0051761.1 retrotransposon gag protein [Cucumis melo var. makuwa]5.7e-6367.2Show/hide
Query:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQGPAQATSSSNNQGSNLEDLVKALATNTISFQ
        MT LLTSFVQG  +KV KCGVCGL+GHPNDKCP+++E+ N+++KYDPHGNTYN+GWRDNPNLRWGND Q   QA  +S+NQG+NLED++KALATNT+SFQ
Subjt:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQGPAQATSSSNNQGSNLEDLVKALATNTISFQ

Query:  NEMKQQISQLTNAISKLEGKGKLLAQPDHANVSAISLRSGKILETPPS-EEKVPSNPTLLVDENKKNEENLENNASSSSSKEVHFP
         EMKQQ++QLT  ISK++GKGKLLAQPDHANVS ISLRS KIL+TP + E+KV S P  L  +N+  EE  E N S S+SK    P
Subjt:  NEMKQQISQLTNAISKLEGKGKLLAQPDHANVSAISLRSGKILETPPS-EEKVPSNPTLLVDENKKNEENLENNASSSSSKEVHFP
XP_008465649.1 PREDICTED: uncharacterized protein LOC103503291, partial [Cucumis melo]2.8e-6266.67Show/hide
Query:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQGPAQATSSSNNQGSNLEDLVKALATNTISFQ
        MTTLLTSFVQG  +KV KCGVCGL+G+PNDKCP ++E+ N++R+YDPHGNTYN GWRDNPNLRWGND Q   QA  +S+NQG+NLED++KALATNT+SFQ
Subjt:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQGPAQATSSSNNQGSNLEDLVKALATNTISFQ

Query:  NEMKQQISQLTNAISKLEGKGKLLAQPDHANVSAISLRSGKILETPPS-EEKVPSNPTLLVDENKKNEENLENNASSSSSKEVHFP
         +MKQQ++QLT  ISK++GKGKL AQPDH NVSAISLRSGKIL+TP + E+KV S    L  +N+  EE +E N+SSS+SK    P
Subjt:  NEMKQQISQLTNAISKLEGKGKLLAQPDHANVSAISLRSGKILETPPS-EEKVPSNPTLLVDENKKNEENLENNASSSSSKEVHFP
XP_016902871.1 PREDICTED: uncharacterized protein LOC107991910 [Cucumis melo]5.7e-6367.2Show/hide
Query:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQGPAQATSSSNNQGSNLEDLVKALATNTISFQ
        MT LLTSFVQG  +KV KCGVCGL+GHPNDKCP+++E+ N+++KYDPHGNTYN+GWRDNPNLRWGND Q   QA  +S+NQG+NLED++KALATNT+SFQ
Subjt:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQGPAQATSSSNNQGSNLEDLVKALATNTISFQ

Query:  NEMKQQISQLTNAISKLEGKGKLLAQPDHANVSAISLRSGKILETPPS-EEKVPSNPTLLVDENKKNEENLENNASSSSSKEVHFP
         EMKQQ++QLT  ISK++GKGKLLAQPDHANVS ISLRS KIL+TP + E+KV S P  L  +N+  EE  E N S S+SK    P
Subjt:  NEMKQQISQLTNAISKLEGKGKLLAQPDHANVSAISLRSGKILETPPS-EEKVPSNPTLLVDENKKNEENLENNASSSSSKEVHFP
TrEMBL top hitse value%identityAlignment
A0A1S3CQU8 uncharacterized protein LOC1035032911.4e-6266.67Show/hide
Query:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQGPAQATSSSNNQGSNLEDLVKALATNTISFQ
        MTTLLTSFVQG  +KV KCGVCGL+G+PNDKCP ++E+ N++R+YDPHGNTYN GWRDNPNLRWGND Q   QA  +S+NQG+NLED++KALATNT+SFQ
Subjt:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQGPAQATSSSNNQGSNLEDLVKALATNTISFQ

Query:  NEMKQQISQLTNAISKLEGKGKLLAQPDHANVSAISLRSGKILETPPS-EEKVPSNPTLLVDENKKNEENLENNASSSSSKEVHFP
         +MKQQ++QLT  ISK++GKGKL AQPDH NVSAISLRSGKIL+TP + E+KV S    L  +N+  EE +E N+SSS+SK    P
Subjt:  NEMKQQISQLTNAISKLEGKGKLLAQPDHANVSAISLRSGKILETPPS-EEKVPSNPTLLVDENKKNEENLENNASSSSSKEVHFP
A0A1S4E3R2 uncharacterized protein LOC1079919102.7e-6367.2Show/hide
Query:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQGPAQATSSSNNQGSNLEDLVKALATNTISFQ
        MT LLTSFVQG  +KV KCGVCGL+GHPNDKCP+++E+ N+++KYDPHGNTYN+GWRDNPNLRWGND Q   QA  +S+NQG+NLED++KALATNT+SFQ
Subjt:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQGPAQATSSSNNQGSNLEDLVKALATNTISFQ

Query:  NEMKQQISQLTNAISKLEGKGKLLAQPDHANVSAISLRSGKILETPPS-EEKVPSNPTLLVDENKKNEENLENNASSSSSKEVHFP
         EMKQQ++QLT  ISK++GKGKLLAQPDHANVS ISLRS KIL+TP + E+KV S P  L  +N+  EE  E N S S+SK    P
Subjt:  NEMKQQISQLTNAISKLEGKGKLLAQPDHANVSAISLRSGKILETPPS-EEKVPSNPTLLVDENKKNEENLENNASSSSSKEVHFP
A0A5D3CRR8 Retrotransposon gag protein9.4e-6467.2Show/hide
Query:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQGPAQATSSSNNQGSNLEDLVKALATNTISFQ
        MTTLLTSFVQG  +KV KCGVCGL+GHPNDKCP+++E+ N++RKYDPHGNTYN+GWRDNPNLRWGND Q   QA S+S+NQG+NLED++KALATNT+SFQ
Subjt:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQGPAQATSSSNNQGSNLEDLVKALATNTISFQ

Query:  NEMKQQISQLTNAISKLEGKGKLLAQPDHANVSAISLRSGKILETPPS-EEKVPSNPTLLVDENKKNEENLENNASSSSSKEVHFP
         EMKQQ++QLT AISK++GKGKL AQ ++ANVSA+SLRSGKIL+TP + E+K  S P  L  +N+  EE +E N S  +SK   FP
Subjt:  NEMKQQISQLTNAISKLEGKGKLLAQPDHANVSAISLRSGKILETPPS-EEKVPSNPTLLVDENKKNEENLENNASSSSSKEVHFP
A0A5D3DCG3 Retrotransposon gag protein2.7e-6367.2Show/hide
Query:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQGPAQATSSSNNQGSNLEDLVKALATNTISFQ
        MT LLTSFVQG  +KV KCGVCGL+GHPNDKCP+++E+ N+++KYDPHGNTYN+GWRDNPNLRWGND Q   QA  +S+NQG+NLED++KALATNT+SFQ
Subjt:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQGPAQATSSSNNQGSNLEDLVKALATNTISFQ

Query:  NEMKQQISQLTNAISKLEGKGKLLAQPDHANVSAISLRSGKILETPPS-EEKVPSNPTLLVDENKKNEENLENNASSSSSKEVHFP
         EMKQQ++QLT  ISK++GKGKLLAQPDHANVS ISLRS KIL+TP + E+KV S P  L  +N+  EE  E N S S+SK    P
Subjt:  NEMKQQISQLTNAISKLEGKGKLLAQPDHANVSAISLRSGKILETPPS-EEKVPSNPTLLVDENKKNEENLENNASSSSSKEVHFP
E5GBZ4 Retrotransposon gag protein1.8e-6267.2Show/hide
Query:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQGPAQATSSSNNQGSNLEDLVKALATNTISFQ
        MTTLLTSFVQG  +KV KCGVC L+GHPNDKCP+++E+ N++RKYDP+GNTYN+GWRDNPNLRWGND Q   QA  +S+NQG+NLED++KALATNT+SFQ
Subjt:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQGPAQATSSSNNQGSNLEDLVKALATNTISFQ

Query:  NEMKQQISQLTNAISKLEGKGKLLAQPDHANVSAISLRSGKILETPPS-EEKVPSNPTLLVDENKKNEENLENNASSSSSKEVHFP
         EMKQQ++QLT AISK++GKGKL AQPD+ANVSAISLRSGKIL+TP + E+KV S    L  +N+  EE +E N S S+SK    P
Subjt:  NEMKQQISQLTNAISKLEGKGKLLAQPDHANVSAISLRSGKILETPPS-EEKVPSNPTLLVDENKKNEENLENNASSSSSKEVHFP
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTACATTGCTCACTTCTTTTGTACAAGGCGGAAATGTGAAAGTTGCAAAATGTGGAGTTTGTGGTCTCATTGGACATCCTAATGACAAGTGTCCCGACCTTGTGGA
AGAGGCAAATGTCATTAGGAAGTACGATCCTCATGGAAACACTTACAATGCCGGTTGGAGAGACAACCCTAACCTTAGATGGGGAAATGACGCCCAAGGACCCGCACAAG
CAACTTCATCCTCAAATAATCAAGGTAGTAATTTGGAAGATTTGGTAAAAGCTCTTGCTACCAATACAATTTCTTTCCAAAATGAAATGAAGCAACAAATTTCCCAATTG
ACCAATGCAATAAGCAAACTAGAAGGTAAAGGCAAGCTTCTAGCTCAGCCCGATCACGCAAATGTAAGTGCCATCTCGCTTAGAAGCGGTAAAATTCTGGAAACCCCTCC
AAGTGAAGAAAAGGTACCATCTAACCCTACCCTTCTAGTAGATGAAAATAAGAAAAATGAAGAAAATTTAGAAAACAACGCCTCTTCTTCTTCTTCAAAAGAAGTACACT
TCCCTTGCCGCATAACACAAATATTCGTTCGCCAGCTCACCAAATCAAGCCCTTACTCAAACGCATGCAACCAACCTTCATCAACTCGCATCCAGCTCGCAGAACGTATC
AACTCACTCCTTCTGCCCACAAACTTCAGTTCGCCTAAAAACGGTTACCTCAACCTCAAGCCCAAGCCCACGGCCCAAGCCTAA
mRNA sequenceShow/hide mRNA sequence
ATGACTACATTGCTCACTTCTTTTGTACAAGGCGGAAATGTGAAAGTTGCAAAATGTGGAGTTTGTGGTCTCATTGGACATCCTAATGACAAGTGTCCCGACCTTGTGGA
AGAGGCAAATGTCATTAGGAAGTACGATCCTCATGGAAACACTTACAATGCCGGTTGGAGAGACAACCCTAACCTTAGATGGGGAAATGACGCCCAAGGACCCGCACAAG
CAACTTCATCCTCAAATAATCAAGGTAGTAATTTGGAAGATTTGGTAAAAGCTCTTGCTACCAATACAATTTCTTTCCAAAATGAAATGAAGCAACAAATTTCCCAATTG
ACCAATGCAATAAGCAAACTAGAAGGTAAAGGCAAGCTTCTAGCTCAGCCCGATCACGCAAATGTAAGTGCCATCTCGCTTAGAAGCGGTAAAATTCTGGAAACCCCTCC
AAGTGAAGAAAAGGTACCATCTAACCCTACCCTTCTAGTAGATGAAAATAAGAAAAATGAAGAAAATTTAGAAAACAACGCCTCTTCTTCTTCTTCAAAAGAAGTACACT
TCCCTTGCCGCATAACACAAATATTCGTTCGCCAGCTCACCAAATCAAGCCCTTACTCAAACGCATGCAACCAACCTTCATCAACTCGCATCCAGCTCGCAGAACGTATC
AACTCACTCCTTCTGCCCACAAACTTCAGTTCGCCTAAAAACGGTTACCTCAACCTCAAGCCCAAGCCCACGGCCCAAGCCTAA
Protein sequenceShow/hide protein sequence
MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQGPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQISQL
TNAISKLEGKGKLLAQPDHANVSAISLRSGKILETPPSEEKVPSNPTLLVDENKKNEENLENNASSSSSKEVHFPCRITQIFVRQLTKSSPYSNACNQPSSTRIQLAERI
NSLLLPTNFSSPKNGYLNLKPKPTAQA