; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0004824 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0004824
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr09:9290132..9290710
RNA-Seq ExpressionPI0004824
SyntenyPI0004824
Gene Ontology termsNA
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042317.1 non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa]8.6e-5962.57Show/hide
Query:  MEVGDGRCCCVWLDPWLRGGAIIRQMGERMVYDVASSREARLFEFNGMDGEWRWSRVSWELLEFWERVQGVRPCLSIGDRWVWVLGRQGEFSISSAWEAI
        +EVGDG  C VWLDPWL+G  I+ Q+GER++YD AS REARL EF G DGEW+W RVS EL++ W+RVQ VRPCLS+ DRWVWV G QG FSI+SA + I
Subjt:  MEVGDGRCCCVWLDPWLRGGAIIRQMGERMVYDVASSREARLFEFNGMDGEWRWSRVSWELLEFWERVQGVRPCLSIGDRWVWVLGRQGEFSISSAWEAI

Query:  RPRSDKVCWARLLWGVGNIPKHSFCTWLVIRDRLGTRDRLSRRDSSIPRSCLLCQGVLSLGIIYFFLVPLG
        RPR  +V W  LLWG GN+PKHSFC WL I+++LGTRDRL R DSS+P S +LCQG +      FF  P G
Subjt:  RPRSDKVCWARLLWGVGNIPKHSFCTWLVIRDRLGTRDRLSRRDSSIPRSCLLCQGVLSLGIIYFFLVPLG

KAA0062318.1 uncharacterized protein E6C27_scaffold154G00690 [Cucumis melo var. makuwa]8.9e-5656.25Show/hide
Query:  MEVGDGRCCCVWLDPWLRGGAIIRQMGERMVYDVASSREARLFEFNGMDGEWRWSRVSWELLEFWERVQGVRPCLSIGDRWVWVLGRQGEFSISSAWEAI
        M+VG+G    VWLDPWL  GAI+ Q+GER++YD AS R+ARL +F   DGEW W RVS EL++ WERVQ V PCLS+ D WVWV GR+G FSI+SAWEA+
Subjt:  MEVGDGRCCCVWLDPWLRGGAIIRQMGERMVYDVASSREARLFEFNGMDGEWRWSRVSWELLEFWERVQGVRPCLSIGDRWVWVLGRQGEFSISSAWEAI

Query:  RPRSDKVCWARLLWGVGNIPKHSFCTWLVIRDRLGTRDRLSRRDSSIPRSCLLCQGVLSLGIIYFFLVPLGMISRLVLFGIWRPLIGLGVGG
        RPR  +V W  LLWG GNI KH FC WL I+DRLGT DRL R DSS+P  C+L                         FG W PLIGLG+GG
Subjt:  RPRSDKVCWARLLWGVGNIPKHSFCTWLVIRDRLGTRDRLSRRDSSIPRSCLLCQGVLSLGIIYFFLVPLGMISRLVLFGIWRPLIGLGVGG

TYK12108.1 non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa]3.3e-5058.68Show/hide
Query:  DGRCCCVWLDPWLRGGAIIRQMGERMVYDVASSREARLFEFNGMDGEWRWSRVSWELLEFWERVQGVRPCLSIGDRWVWVLGRQGEFSISSAWEAIRPRS
        D R    W    +  GAI+ Q+GER++YD AS REARL +F G +GEW WSRV  EL+  W+RVQ V PCLS+ D WVWV GRQG FSI+SAW+AIRPR 
Subjt:  DGRCCCVWLDPWLRGGAIIRQMGERMVYDVASSREARLFEFNGMDGEWRWSRVSWELLEFWERVQGVRPCLSIGDRWVWVLGRQGEFSISSAWEAIRPRS

Query:  DKVCWARLLWGVGNIPKHSFCTWLVIRDRLGTRDRLSRRDSSIPRSCLLCQGVLSLGIIYFFLVPLG
         +V W  LLWG  NIPKHSFC WL I+DRLGTRDRL R DSS+P  C+LC+G +      FF  P G
Subjt:  DKVCWARLLWGVGNIPKHSFCTWLVIRDRLGTRDRLSRRDSSIPRSCLLCQGVLSLGIIYFFLVPLG

XP_031737556.1 uncharacterized protein LOC116402448 [Cucumis sativus]4.1e-5359.12Show/hide
Query:  MEVGDGRCCCVWLDPWLRGGAIIRQMGERMVYDVASSREARLFEFNGMDGEWRWSRVSWELLEFWERVQGVRPCLSIGDRWVWVLGRQGEFSISSAWEAI
        MEVG+G+ C VWLDP ++GG II+Q GER++YD  S R+ARL +F G DG+WRWS VS +L++ W+R+QGVRP  S+ D WV V G    FSI SA EAI
Subjt:  MEVGDGRCCCVWLDPWLRGGAIIRQMGERMVYDVASSREARLFEFNGMDGEWRWSRVSWELLEFWERVQGVRPCLSIGDRWVWVLGRQGEFSISSAWEAI

Query:  RPRSDKVCWARLLWGVGNIPKHSFCTWLVIRDRLGTRDRLSRRDSSIPRSCLLCQGVLSLGIIYFFLVPLG--MISRLVLF
        RP S +V W+ LLWG GNIPKHSF TWL I+DRLGTRDRLSR DSSIP SC+LC          FF  P G  + SR++LF
Subjt:  RPRSDKVCWARLLWGVGNIPKHSFCTWLVIRDRLGTRDRLSRRDSSIPRSCLLCQGVLSLGIIYFFLVPLG--MISRLVLF

XP_031745548.1 uncharacterized protein LOC116405965 [Cucumis sativus]2.4e-5365.75Show/hide
Query:  VWLDPWLRGGAIIRQMGERMVYDVASSREARLFEFNGMDGEWRWSRVSWELLEFWERVQGVRPCLSIGDRWVWVLGRQGEFSISSAWEAIRPRSDKVCWA
        VWL PW++GG II+Q G+R++YDV S  +ARL +F G DG+WRW  VS +L++ W+RVQGVRP  S+ DRWVWV G    FSI+SAWE IRP S +V W+
Subjt:  VWLDPWLRGGAIIRQMGERMVYDVASSREARLFEFNGMDGEWRWSRVSWELLEFWERVQGVRPCLSIGDRWVWVLGRQGEFSISSAWEAIRPRSDKVCWA

Query:  RLLWGVGNIPKHSFCTWLVIRDRLGTRDRLSRRDSSIPRSCLLCQG
         LLWG GNIPKHSFC WL IRDRLGTRDRLSR D SIP SCLLC G
Subjt:  RLLWGVGNIPKHSFCTWLVIRDRLGTRDRLSRRDSSIPRSCLLCQG

TrEMBL top hitse value%identityAlignment
A0A5A7T440 Zf-RVT domain-containing protein6.7e-4965.67Show/hide
Query:  MEVGDGRCCCVWLDPWLRGGAIIRQMGERMVYDVASSREARLFEFNGMDGEWRWSRVSWELLEFWERVQGVRPCLSIGDRWVWVLGRQGEFSISSAWEAI
        M+VG+G  C VWLDPWL+GGAI+ Q+GER++YD AS REARL +F   +GEW W RVS EL++ WERVQ V PCLS+ D WVWV GRQG FSI+SAWEAI
Subjt:  MEVGDGRCCCVWLDPWLRGGAIIRQMGERMVYDVASSREARLFEFNGMDGEWRWSRVSWELLEFWERVQGVRPCLSIGDRWVWVLGRQGEFSISSAWEAI

Query:  RPRSDKVCWARLLWGVGNIPKHSFCTWLVIRDRL
         PR  +V W  LLW  GNIPKHSFC WL I+DR+
Subjt:  RPRSDKVCWARLLWGVGNIPKHSFCTWLVIRDRL

A0A5A7TKU4 Non-LTR retroelement reverse transcriptase-like protein4.2e-5962.57Show/hide
Query:  MEVGDGRCCCVWLDPWLRGGAIIRQMGERMVYDVASSREARLFEFNGMDGEWRWSRVSWELLEFWERVQGVRPCLSIGDRWVWVLGRQGEFSISSAWEAI
        +EVGDG  C VWLDPWL+G  I+ Q+GER++YD AS REARL EF G DGEW+W RVS EL++ W+RVQ VRPCLS+ DRWVWV G QG FSI+SA + I
Subjt:  MEVGDGRCCCVWLDPWLRGGAIIRQMGERMVYDVASSREARLFEFNGMDGEWRWSRVSWELLEFWERVQGVRPCLSIGDRWVWVLGRQGEFSISSAWEAI

Query:  RPRSDKVCWARLLWGVGNIPKHSFCTWLVIRDRLGTRDRLSRRDSSIPRSCLLCQGVLSLGIIYFFLVPLG
        RPR  +V W  LLWG GN+PKHSFC WL I+++LGTRDRL R DSS+P S +LCQG +      FF  P G
Subjt:  RPRSDKVCWARLLWGVGNIPKHSFCTWLVIRDRLGTRDRLSRRDSSIPRSCLLCQGVLSLGIIYFFLVPLG

A0A5A7V3Z0 Reverse transcriptase domain-containing protein4.3e-5656.25Show/hide
Query:  MEVGDGRCCCVWLDPWLRGGAIIRQMGERMVYDVASSREARLFEFNGMDGEWRWSRVSWELLEFWERVQGVRPCLSIGDRWVWVLGRQGEFSISSAWEAI
        M+VG+G    VWLDPWL  GAI+ Q+GER++YD AS R+ARL +F   DGEW W RVS EL++ WERVQ V PCLS+ D WVWV GR+G FSI+SAWEA+
Subjt:  MEVGDGRCCCVWLDPWLRGGAIIRQMGERMVYDVASSREARLFEFNGMDGEWRWSRVSWELLEFWERVQGVRPCLSIGDRWVWVLGRQGEFSISSAWEAI

Query:  RPRSDKVCWARLLWGVGNIPKHSFCTWLVIRDRLGTRDRLSRRDSSIPRSCLLCQGVLSLGIIYFFLVPLGMISRLVLFGIWRPLIGLGVGG
        RPR  +V W  LLWG GNI KH FC WL I+DRLGT DRL R DSS+P  C+L                         FG W PLIGLG+GG
Subjt:  RPRSDKVCWARLLWGVGNIPKHSFCTWLVIRDRLGTRDRLSRRDSSIPRSCLLCQGVLSLGIIYFFLVPLGMISRLVLFGIWRPLIGLGVGG

A0A5D3BDZ6 Zf-RVT domain-containing protein1.5e-4864.93Show/hide
Query:  MEVGDGRCCCVWLDPWLRGGAIIRQMGERMVYDVASSREARLFEFNGMDGEWRWSRVSWELLEFWERVQGVRPCLSIGDRWVWVLGRQGEFSISSAWEAI
        M+VG+G  C VWLDPWL+GGAI+ Q+GER++YD AS REARL +F   +GEW W RVS EL++ WERVQ V PCL++ D WVWV GRQG FSI+SAWEAI
Subjt:  MEVGDGRCCCVWLDPWLRGGAIIRQMGERMVYDVASSREARLFEFNGMDGEWRWSRVSWELLEFWERVQGVRPCLSIGDRWVWVLGRQGEFSISSAWEAI

Query:  RPRSDKVCWARLLWGVGNIPKHSFCTWLVIRDRL
         PR  +V W  LLW  GNIPKHSFC WL I+DR+
Subjt:  RPRSDKVCWARLLWGVGNIPKHSFCTWLVIRDRL

A0A5D3CLU1 Non-LTR retroelement reverse transcriptase-like protein1.6e-5058.68Show/hide
Query:  DGRCCCVWLDPWLRGGAIIRQMGERMVYDVASSREARLFEFNGMDGEWRWSRVSWELLEFWERVQGVRPCLSIGDRWVWVLGRQGEFSISSAWEAIRPRS
        D R    W    +  GAI+ Q+GER++YD AS REARL +F G +GEW WSRV  EL+  W+RVQ V PCLS+ D WVWV GRQG FSI+SAW+AIRPR 
Subjt:  DGRCCCVWLDPWLRGGAIIRQMGERMVYDVASSREARLFEFNGMDGEWRWSRVSWELLEFWERVQGVRPCLSIGDRWVWVLGRQGEFSISSAWEAIRPRS

Query:  DKVCWARLLWGVGNIPKHSFCTWLVIRDRLGTRDRLSRRDSSIPRSCLLCQGVLSLGIIYFFLVPLG
         +V W  LLWG  NIPKHSFC WL I+DRLGTRDRL R DSS+P  C+LC+G +      FF  P G
Subjt:  DKVCWARLLWGVGNIPKHSFCTWLVIRDRLGTRDRLSRRDSSIPRSCLLCQGVLSLGIIYFFLVPLG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G33710.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein4.2e-1143.75Show/hide
Query:  FSISSAWEAIRPRSDKVCWARLLWGVGNIPKHSFCTWLVIRDRLGTRDRLSRRDSSIPRSCLLC
        FS +  W A+RPRSD V WA+ +W  G  PKH+F  W+   DRL T+ RL+     +  +C LC
Subjt:  FSISSAWEAIRPRSDKVCWARLLWGVGNIPKHSFCTWLVIRDRLGTRDRLSRRDSSIPRSCLLC

AT1G43730.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein1.8e-0942.19Show/hide
Query:  FSISSAWEAIRPRSDKVCWARLLWGVGNIPKHSFCTWLVIRDRLGTRDRLSRRDSSIPRSCLLC
        FS +    A+ P++  V W + +W   ++PKH+F  W+V  +RL TRDRL     SIP  CLLC
Subjt:  FSISSAWEAIRPRSDKVCWARLLWGVGNIPKHSFCTWLVIRDRLGTRDRLSRRDSSIPRSCLLC

AT1G60720.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein1.5e-1632.7Show/hide
Query:  VGDGRCCCVWLDPWLRGGAIIRQMGERMVYDVASSREARLFEFNGMDGEWRW----SRVSWELLEFWERVQGVRPCLSIGDRWVWVLGR---QGEFSISS
        +G+GR    W D W   G +I+ MG+     +     AR+ E  G++G W+     S  +  + +    +    P  +I D + WV+G    QG FS + 
Subjt:  VGDGRCCCVWLDPWLRGGAIIRQMGERMVYDVASSREARLFEFNGMDGEWRW----SRVSWELLEFWERVQGVRPCLSIGDRWVWVLGR---QGEFSISS

Query:  AWEAIRPRSDKVCWARLLWGVGNIPKHSFCTWLVIRDRLGTRDRLSRRDSSIPRSCLLC
         W+AIRPR+ ++ WA+ +W  G +PKH+F  W+   DRL TR RL+         C LC
Subjt:  AWEAIRPRSDKVCWARLLWGVGNIPKHSFCTWLVIRDRLGTRDRLSRRDSSIPRSCLLC

AT4G04650.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein3.6e-1530.06Show/hide
Query:  EVGDGRCCCVWLDPWLRGGAIIRQMGERMVYDVASSREARLFEFNGMDGEWRW-------SRVSWELLEFWERVQGVRPCLSIGDRWVW---VLGRQGEF
        EVG G     W D W+  G +I  +G      V    +A + +   + G   W       + +  +L       QG+  C    D ++W   +      F
Subjt:  EVGDGRCCCVWLDPWLRGGAIIRQMGERMVYDVASSREARLFEFNGMDGEWRW-------SRVSWELLEFWERVQGVRPCLSIGDRWVW---VLGRQGEF

Query:  SISSAWEAIRPRSDKVCWARLLWGVGNIPKHSFCTWLVIRDRLGTRDRLSRRDSSIPRSCLLC
        S    W A+ P+S  V W + +W   ++PKH+F  W+V  +RL TRDRL     SIP  CLLC
Subjt:  SISSAWEAIRPRSDKVCWARLLWGVGNIPKHSFCTWLVIRDRLGTRDRLSRRDSSIPRSCLLC

AT5G16486.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein3.6e-1529.88Show/hide
Query:  EVGDGRCCCVWLDPWLRGGAIIRQMGERMVYDVASSREARLFEFNGMDGEWRWSRVSWELLEFWERVQGVRPCLSI--------GDRWVWVLGRQGE---
        +VG G  C  W + W   G +I   G+         R A + +    DG W W   S       + ++   P  S+         D ++W +G       
Subjt:  EVGDGRCCCVWLDPWLRGGAIIRQMGERMVYDVASSREARLFEFNGMDGEWRWSRVSWELLEFWERVQGVRPCLSI--------GDRWVWVLGRQGE---

Query:  FSISSAWEAIRPRSDKVCWARLLWGVGNIPKHSFCTWLVIRDRLGTRDRLSRRDSSIPRSCLLC
        FS ++ W  + P  +KV W + +W  G IPKH+F +W+ IR RL TRD+L      +P  CLLC
Subjt:  FSISSAWEAIRPRSDKVCWARLLWGVGNIPKHSFCTWLVIRDRLGTRDRLSRRDSSIPRSCLLC


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGTTGGTGATGGTAGGTGTTGTTGTGTGTGGCTTGACCCTTGGCTGCGTGGTGGCGCGATCATTCGTCAGATGGGTGAGCGGATGGTGTATGATGTTGCGAGTAG
TAGGGAGGCTAGGCTTTTTGAGTTCAATGGCATGGATGGCGAGTGGAGGTGGTCGAGGGTTTCTTGGGAGTTACTTGAGTTTTGGGAGAGGGTTCAGGGCGTCCGTCCTT
GTTTGAGTATTGGGGATCGATGGGTGTGGGTTCTGGGTCGTCAGGGTGAGTTCTCGATATCGAGTGCGTGGGAGGCTATTCGTCCTAGGAGTGACAAGGTTTGTTGGGCT
CGTCTGCTGTGGGGTGTAGGGAATATTCCTAAACATTCTTTCTGTACTTGGTTGGTTATTAGGGATAGGTTGGGCACTCGGGATAGGTTGAGTAGGCGGGATAGTTCGAT
TCCTCGATCGTGTCTTCTTTGCCAGGGAGTGTTGAGTCTCGGGATCATCTATTTTTTTCTTGTCCCTTTGGGTATGATATCTAGACTCGTATTATTCGGGATATGGCGTC
CTCTTATAGGGTTGGGGGTGGGAGGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGGTTGGTGATGGTAGGTGTTGTTGTGTGTGGCTTGACCCTTGGCTGCGTGGTGGCGCGATCATTCGTCAGATGGGTGAGCGGATGGTGTATGATGTTGCGAGTAG
TAGGGAGGCTAGGCTTTTTGAGTTCAATGGCATGGATGGCGAGTGGAGGTGGTCGAGGGTTTCTTGGGAGTTACTTGAGTTTTGGGAGAGGGTTCAGGGCGTCCGTCCTT
GTTTGAGTATTGGGGATCGATGGGTGTGGGTTCTGGGTCGTCAGGGTGAGTTCTCGATATCGAGTGCGTGGGAGGCTATTCGTCCTAGGAGTGACAAGGTTTGTTGGGCT
CGTCTGCTGTGGGGTGTAGGGAATATTCCTAAACATTCTTTCTGTACTTGGTTGGTTATTAGGGATAGGTTGGGCACTCGGGATAGGTTGAGTAGGCGGGATAGTTCGAT
TCCTCGATCGTGTCTTCTTTGCCAGGGAGTGTTGAGTCTCGGGATCATCTATTTTTTTCTTGTCCCTTTGGGTATGATATCTAGACTCGTATTATTCGGGATATGGCGTC
CTCTTATAGGGTTGGGGGTGGGAGGTTGA
Protein sequenceShow/hide protein sequence
MEVGDGRCCCVWLDPWLRGGAIIRQMGERMVYDVASSREARLFEFNGMDGEWRWSRVSWELLEFWERVQGVRPCLSIGDRWVWVLGRQGEFSISSAWEAIRPRSDKVCWA
RLLWGVGNIPKHSFCTWLVIRDRLGTRDRLSRRDSSIPRSCLLCQGVLSLGIIYFFLVPLGMISRLVLFGIWRPLIGLGVGG