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PI0004839 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0004839
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr03:8898299..8898834
RNA-Seq ExpressionPI0004839
SyntenyPI0004839
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032766.1 retrotransposon protein [Cucumis melo var. makuwa]2.6e-4467.14Show/hide
Query:  LKRTFQAISEMWGPTCSGFGWNDEVKCIIVEKELFENLVKSHSTAKGLLNKLFPYYDELSYVFGKDCAMGKRVETFADVGSNVP-GGFEPFAGDDGQNMD
        LKRTFQAI+EM GP CSGFGWNDE KCI+ EKELF+N V+SH  AKGLLNK FPYYDEL+YVFG+D A G+  ETFADVGSN P GG++ F   DG N D
Subjt:  LKRTFQAISEMWGPTCSGFGWNDEVKCIIVEKELFENLVKSHSTAKGLLNKLFPYYDELSYVFGKDCAMGKRVETFADVGSNVP-GGFEPFAGDDGQNMD

Query:  IPCMYSQGRPMSTDDIVGSHPKWLSEGRAGSSGLKRKRGA
         P +YSQG  +S DD+  S P   SEGR GSSG KRKRG+
Subjt:  IPCMYSQGRPMSTDDIVGSHPKWLSEGRAGSSGLKRKRGA
KAA0042500.1 retrotransposon protein [Cucumis melo var. makuwa]1.7e-4668.57Show/hide
Query:  LKRTFQAISEMWGPTCSGFGWNDEVKCIIVEKELFENLVKSHSTAKGLLNKLFPYYDELSYVFGKDCAMGKRVETFADVGSNVP-GGFEPFAGDDGQNMD
        LKRTFQAI+EMWGP CSGFGWNDE KCI+VEKELF+N V+SH  AKGLLNK FPYYDEL+YVFG+D A G+  ETFADVGSN P GG++ F   DG N D
Subjt:  LKRTFQAISEMWGPTCSGFGWNDEVKCIIVEKELFENLVKSHSTAKGLLNKLFPYYDELSYVFGKDCAMGKRVETFADVGSNVP-GGFEPFAGDDGQNMD

Query:  IPCMYSQGRPMSTDDIVGSHPKWLSEGRAGSSGLKRKRGA
         P +YSQG  +S DD+  S P   SEGR GSSG KRKRG+
Subjt:  IPCMYSQGRPMSTDDIVGSHPKWLSEGRAGSSGLKRKRGA
KAA0064022.1 retrotransposon protein [Cucumis melo var. makuwa]2.0e-4467.14Show/hide
Query:  LKRTFQAISEMWGPTCSGFGWNDEVKCIIVEKELFENLVKSHSTAKGLLNKLFPYYDELSYVFGKDCAMGKRVETFADVGSNVP-GGFEPFAGDDGQNMD
        LKRTFQAI+EM GP CSGFGWNDE KCI+ EKELF+N V+SH  AKGLLNK FPYYDEL+YVFG+D A G+  ETFADVGSN P GG++ F   DG N D
Subjt:  LKRTFQAISEMWGPTCSGFGWNDEVKCIIVEKELFENLVKSHSTAKGLLNKLFPYYDELSYVFGKDCAMGKRVETFADVGSNVP-GGFEPFAGDDGQNMD

Query:  IPCMYSQGRPMSTDDIVGSHPKWLSEGRAGSSGLKRKRGA
         P +YSQG  +S DD+  S P   SEGR GSSG KRKRG+
Subjt:  IPCMYSQGRPMSTDDIVGSHPKWLSEGRAGSSGLKRKRGA
KAA0066208.1 retrotransposon protein [Cucumis melo var. makuwa]2.0e-4467.86Show/hide
Query:  LKRTFQAISEMWGPTCSGFGWNDEVKCIIVEKELFENLVKSHSTAKGLLNKLFPYYDELSYVFGKDCAMGKRVETFADVGSNVP-GGFEPFAGDDGQNMD
        LKRTFQAI+EM GP CSGFGWNDE KCII EKELF+N V+SH  AKGLLNK FPYYDEL+YVFG+D A G+  ETFADVGSN P GG++ F   DG N D
Subjt:  LKRTFQAISEMWGPTCSGFGWNDEVKCIIVEKELFENLVKSHSTAKGLLNKLFPYYDELSYVFGKDCAMGKRVETFADVGSNVP-GGFEPFAGDDGQNMD

Query:  IPCMYSQGRPMSTDDIVGSHPKWLSEGRAGSSGLKRKRGA
         P +YSQG  +S DD+  S P   SEGR GSSG KRKRG+
Subjt:  IPCMYSQGRPMSTDDIVGSHPKWLSEGRAGSSGLKRKRGA
TYK10915.1 retrotransposon protein [Cucumis melo var. makuwa]2.6e-4467.14Show/hide
Query:  LKRTFQAISEMWGPTCSGFGWNDEVKCIIVEKELFENLVKSHSTAKGLLNKLFPYYDELSYVFGKDCAMGKRVETFADVGSNVP-GGFEPFAGDDGQNMD
        LKRTFQAI+EM GP CSGFGWNDE KCI+ EKELF+N V+SH  AKGLLNK FPYYDEL+YVFG+D A G+  ETFADVGSN P GG++ F   DG N D
Subjt:  LKRTFQAISEMWGPTCSGFGWNDEVKCIIVEKELFENLVKSHSTAKGLLNKLFPYYDELSYVFGKDCAMGKRVETFADVGSNVP-GGFEPFAGDDGQNMD

Query:  IPCMYSQGRPMSTDDIVGSHPKWLSEGRAGSSGLKRKRGA
         P +YSQG  +S DD+  S P   SEGR GSSG KRKRG+
Subjt:  IPCMYSQGRPMSTDDIVGSHPKWLSEGRAGSSGLKRKRGA
TrEMBL top hitse value%identityAlignment
A0A5A7TGP1 Retrotransposon protein8.0e-4768.57Show/hide
Query:  LKRTFQAISEMWGPTCSGFGWNDEVKCIIVEKELFENLVKSHSTAKGLLNKLFPYYDELSYVFGKDCAMGKRVETFADVGSNVP-GGFEPFAGDDGQNMD
        LKRTFQAI+EMWGP CSGFGWNDE KCI+VEKELF+N V+SH  AKGLLNK FPYYDEL+YVFG+D A G+  ETFADVGSN P GG++ F   DG N D
Subjt:  LKRTFQAISEMWGPTCSGFGWNDEVKCIIVEKELFENLVKSHSTAKGLLNKLFPYYDELSYVFGKDCAMGKRVETFADVGSNVP-GGFEPFAGDDGQNMD

Query:  IPCMYSQGRPMSTDDIVGSHPKWLSEGRAGSSGLKRKRGA
         P +YSQG  +S DD+  S P   SEGR GSSG KRKRG+
Subjt:  IPCMYSQGRPMSTDDIVGSHPKWLSEGRAGSSGLKRKRGA
A0A5A7TRV1 Retrotransposon protein1.3e-4467.14Show/hide
Query:  LKRTFQAISEMWGPTCSGFGWNDEVKCIIVEKELFENLVKSHSTAKGLLNKLFPYYDELSYVFGKDCAMGKRVETFADVGSNVP-GGFEPFAGDDGQNMD
        LKRTFQAI+EM GP CSGFGWNDE KCI+ EKELF+N V+SH  AKGLLNK FPYYDEL+YVFG+D A G+  ETFADVGSN P GG++ F   DG N D
Subjt:  LKRTFQAISEMWGPTCSGFGWNDEVKCIIVEKELFENLVKSHSTAKGLLNKLFPYYDELSYVFGKDCAMGKRVETFADVGSNVP-GGFEPFAGDDGQNMD

Query:  IPCMYSQGRPMSTDDIVGSHPKWLSEGRAGSSGLKRKRGA
         P +YSQG  +S DD+  S P   SEGR GSSG KRKRG+
Subjt:  IPCMYSQGRPMSTDDIVGSHPKWLSEGRAGSSGLKRKRGA
A0A5A7V6Q9 Retrotransposon protein9.8e-4567.14Show/hide
Query:  LKRTFQAISEMWGPTCSGFGWNDEVKCIIVEKELFENLVKSHSTAKGLLNKLFPYYDELSYVFGKDCAMGKRVETFADVGSNVP-GGFEPFAGDDGQNMD
        LKRTFQAI+EM GP CSGFGWNDE KCI+ EKELF+N V+SH  AKGLLNK FPYYDEL+YVFG+D A G+  ETFADVGSN P GG++ F   DG N D
Subjt:  LKRTFQAISEMWGPTCSGFGWNDEVKCIIVEKELFENLVKSHSTAKGLLNKLFPYYDELSYVFGKDCAMGKRVETFADVGSNVP-GGFEPFAGDDGQNMD

Query:  IPCMYSQGRPMSTDDIVGSHPKWLSEGRAGSSGLKRKRGA
         P +YSQG  +S DD+  S P   SEGR GSSG KRKRG+
Subjt:  IPCMYSQGRPMSTDDIVGSHPKWLSEGRAGSSGLKRKRGA
A0A5A7VES2 Retrotransposon protein9.8e-4567.86Show/hide
Query:  LKRTFQAISEMWGPTCSGFGWNDEVKCIIVEKELFENLVKSHSTAKGLLNKLFPYYDELSYVFGKDCAMGKRVETFADVGSNVP-GGFEPFAGDDGQNMD
        LKRTFQAI+EM GP CSGFGWNDE KCII EKELF+N V+SH  AKGLLNK FPYYDEL+YVFG+D A G+  ETFADVGSN P GG++ F   DG N D
Subjt:  LKRTFQAISEMWGPTCSGFGWNDEVKCIIVEKELFENLVKSHSTAKGLLNKLFPYYDELSYVFGKDCAMGKRVETFADVGSNVP-GGFEPFAGDDGQNMD

Query:  IPCMYSQGRPMSTDDIVGSHPKWLSEGRAGSSGLKRKRGA
         P +YSQG  +S DD+  S P   SEGR GSSG KRKRG+
Subjt:  IPCMYSQGRPMSTDDIVGSHPKWLSEGRAGSSGLKRKRGA
A0A5D3DCZ1 Retrotransposon protein1.3e-4467.14Show/hide
Query:  LKRTFQAISEMWGPTCSGFGWNDEVKCIIVEKELFENLVKSHSTAKGLLNKLFPYYDELSYVFGKDCAMGKRVETFADVGSNVP-GGFEPFAGDDGQNMD
        LKRTFQAI+EM GP CSGFGWNDE KCI+ EKELF+N V+SH  AKGLLNK FPYYDEL+YVFG+D A G+  ETFADVGSN P GG++ F   DG N D
Subjt:  LKRTFQAISEMWGPTCSGFGWNDEVKCIIVEKELFENLVKSHSTAKGLLNKLFPYYDELSYVFGKDCAMGKRVETFADVGSNVP-GGFEPFAGDDGQNMD

Query:  IPCMYSQGRPMSTDDIVGSHPKWLSEGRAGSSGLKRKRGA
         P +YSQG  +S DD+  S P   SEGR GSSG KRKRG+
Subjt:  IPCMYSQGRPMSTDDIVGSHPKWLSEGRAGSSGLKRKRGA
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTAAAAGAACCTTTCAAGCCATATCAGAGATGTGGGGCCCTACCTGCAGTGGATTCGGTTGGAACGACGAGGTGAAATGCATAATTGTTGAGAAAGAGCTATTTGA
GAATTTGGTGAAGAGTCACTCGACAGCAAAGGGTCTTTTGAACAAGCTGTTTCCATACTACGACGAACTGTCCTATGTCTTCGGAAAAGACTGCGCTATGGGAAAACGCG
TGGAGACATTCGCAGATGTTGGTTCTAATGTGCCAGGTGGTTTCGAGCCATTTGCAGGTGACGATGGACAGAATATGGACATTCCATGCATGTACAGCCAGGGACGTCCC
ATGTCAACCGATGACATTGTGGGATCACATCCTAAATGGTTGAGTGAGGGTAGGGCGGGTTCGAGCGGATTGAAAAGGAAGCGGGGGGCCATAATGCAGAAACTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCTTAAAAGAACCTTTCAAGCCATATCAGAGATGTGGGGCCCTACCTGCAGTGGATTCGGTTGGAACGACGAGGTGAAATGCATAATTGTTGAGAAAGAGCTATTTGA
GAATTTGGTGAAGAGTCACTCGACAGCAAAGGGTCTTTTGAACAAGCTGTTTCCATACTACGACGAACTGTCCTATGTCTTCGGAAAAGACTGCGCTATGGGAAAACGCG
TGGAGACATTCGCAGATGTTGGTTCTAATGTGCCAGGTGGTTTCGAGCCATTTGCAGGTGACGATGGACAGAATATGGACATTCCATGCATGTACAGCCAGGGACGTCCC
ATGTCAACCGATGACATTGTGGGATCACATCCTAAATGGTTGAGTGAGGGTAGGGCGGGTTCGAGCGGATTGAAAAGGAAGCGGGGGGCCATAATGCAGAAACTTTGA
Protein sequenceShow/hide protein sequence
MLKRTFQAISEMWGPTCSGFGWNDEVKCIIVEKELFENLVKSHSTAKGLLNKLFPYYDELSYVFGKDCAMGKRVETFADVGSNVPGGFEPFAGDDGQNMDIPCMYSQGRP
MSTDDIVGSHPKWLSEGRAGSSGLKRKRGAIMQKL