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PI0004861 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0004861
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrovirus-related Pol polyprotein
Genome locationchr10:6639558..6639860
RNA-Seq ExpressionPI0004861
SyntenyPI0004861
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domainsIPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
MCH92231.1 hypothetical protein [Trifolium medium]2.0e-2366.67Show/hide
Query:  DKAKIDVIQKLSYPTCLKDVRSFLSSAGFYRKFIKDFSKIALPLTSLLQKDVPFVIDDKCKKAFNELKKRLVSTPILQSPN
        D AKIDVI  L +PTC++++RSFL  AGFYR+FIKDFSKIALPL++LLQKD+ F  DDKCK+AF+ LKK L STP++Q P+
Subjt:  DKAKIDVIQKLSYPTCLKDVRSFLSSAGFYRKFIKDFSKIALPLTSLLQKDVPFVIDDKCKKAFNELKKRLVSTPILQSPN

XP_021603241.1 uncharacterized protein LOC110608326 [Manihot esculenta]2.3e-2466.67Show/hide
Query:  DKAKIDVIQKLSYPTCLKDVRSFLSSAGFYRKFIKDFSKIALPLTSLLQKDVPFVIDDKCKKAFNELKKRLVSTPILQSPN
        DKAK+DVI+ L YPTC++D+RSFL  AGFYR+FIKDFS+IA PL  LLQKDVPF  D++C++AFN LK++LV+ PI+Q+PN
Subjt:  DKAKIDVIQKLSYPTCLKDVRSFLSSAGFYRKFIKDFSKIALPLTSLLQKDVPFVIDDKCKKAFNELKKRLVSTPILQSPN

XP_028797073.1 LOW QUALITY PROTEIN: uncharacterized protein LOC114752508 [Prosopis alba]4.0e-2470.37Show/hide
Query:  DKAKIDVIQKLSYPTCLKDVRSFLSSAGFYRKFIKDFSKIALPLTSLLQKDVPFVIDDKCKKAFNELKKRLVSTPILQSPN
        DKAKID+I  L YP+C+KDVRSFL  AGFYR+FI+DFSKIALPL+ LLQKDV FV DD C+ A++ELKKRL + PI+Q PN
Subjt:  DKAKIDVIQKLSYPTCLKDVRSFLSSAGFYRKFIKDFSKIALPLTSLLQKDVPFVIDDKCKKAFNELKKRLVSTPILQSPN

XP_028798815.1 LOW QUALITY PROTEIN: uncharacterized protein LOC114754213 [Prosopis alba]4.0e-2470.37Show/hide
Query:  DKAKIDVIQKLSYPTCLKDVRSFLSSAGFYRKFIKDFSKIALPLTSLLQKDVPFVIDDKCKKAFNELKKRLVSTPILQSPN
        DKAKID+I  L YP+C+KDVRSFL  AGFYR+FI+DFSKIALPL+ LLQKDV FV DD C+ A++ELKKRL + PI+Q PN
Subjt:  DKAKIDVIQKLSYPTCLKDVRSFLSSAGFYRKFIKDFSKIALPLTSLLQKDVPFVIDDKCKKAFNELKKRLVSTPILQSPN

XP_028802716.1 uncharacterized protein LOC114757797 [Prosopis alba]3.0e-2470.37Show/hide
Query:  DKAKIDVIQKLSYPTCLKDVRSFLSSAGFYRKFIKDFSKIALPLTSLLQKDVPFVIDDKCKKAFNELKKRLVSTPILQSPN
        DKAKID+I  L YP+C+KDVRSFL  AGFYR+FI+DFSKIALPL+ LLQKDV FV DD C+ A++ELKKRL + PI+Q PN
Subjt:  DKAKIDVIQKLSYPTCLKDVRSFLSSAGFYRKFIKDFSKIALPLTSLLQKDVPFVIDDKCKKAFNELKKRLVSTPILQSPN

TrEMBL top hitse value%identityAlignment
A0A151QL68 Transposon Ty3-G Gag-Pol polyprotein8.1e-2366.67Show/hide
Query:  DKAKIDVIQKLSYPTCLKDVRSFLSSAGFYRKFIKDFSKIALPLTSLLQKDVPFVIDDKCKKAFNELKKRLVSTPILQSPN
        DKAKI+VI  L YPTC+K++RSFL  AGFYR+FIKDFSKIA PL+ LLQKD  F  ++ C+ AF+ELK RLVS PIL +PN
Subjt:  DKAKIDVIQKLSYPTCLKDVRSFLSSAGFYRKFIKDFSKIALPLTSLLQKDVPFVIDDKCKKAFNELKKRLVSTPILQSPN

A0A2K3NDP5 RT_RNaseH_2 domain-containing protein (Fragment)2.4e-2266.67Show/hide
Query:  DKAKIDVIQKLSYPTCLKDVRSFLSSAGFYRKFIKDFSKIALPLTSLLQKDVPFVIDDKCKKAFNELKKRLVSTPILQSPN
        D AKI+V   L YP+C+ ++RSFL  AGFY +FIKDFSKIALPL++LLQKDV F  DDKCKKAF+ LK  L STPI+Q PN
Subjt:  DKAKIDVIQKLSYPTCLKDVRSFLSSAGFYRKFIKDFSKIALPLTSLLQKDVPFVIDDKCKKAFNELKKRLVSTPILQSPN

A0A2U1NRI2 Reverse transcriptase2.4e-2266.67Show/hide
Query:  DKAKIDVIQKLSYPTCLKDVRSFLSSAGFYRKFIKDFSKIALPLTSLLQKDVPFVIDDKCKKAFNELKKRLVSTPILQSPN
        DKAK+DVI KL  PT +K +RSFL  AGFYR+FIKDFSKIA PLT LL+KD+PF  DD+C+KAF  LK++L  TPI+ SPN
Subjt:  DKAKIDVIQKLSYPTCLKDVRSFLSSAGFYRKFIKDFSKIALPLTSLLQKDVPFVIDDKCKKAFNELKKRLVSTPILQSPN

A0A371IAU2 Retrovirus-related Pol polyprotein (Fragment)3.1e-2267.9Show/hide
Query:  DKAKIDVIQKLSYPTCLKDVRSFLSSAGFYRKFIKDFSKIALPLTSLLQKDVPFVIDDKCKKAFNELKKRLVSTPILQSPN
        D+ KIDVI  L  PT L++VRSFL  A FYR+FIKDFSKIALPL+ LLQKDV F+ D  C  AF ELK+RL STPILQ+PN
Subjt:  DKAKIDVIQKLSYPTCLKDVRSFLSSAGFYRKFIKDFSKIALPLTSLLQKDVPFVIDDKCKKAFNELKKRLVSTPILQSPN

A0A392MXJ5 Uncharacterized protein (Fragment)9.5e-2466.67Show/hide
Query:  DKAKIDVIQKLSYPTCLKDVRSFLSSAGFYRKFIKDFSKIALPLTSLLQKDVPFVIDDKCKKAFNELKKRLVSTPILQSPN
        D AKIDVI  L +PTC++++RSFL  AGFYR+FIKDFSKIALPL++LLQKD+ F  DDKCK+AF+ LKK L STP++Q P+
Subjt:  DKAKIDVIQKLSYPTCLKDVRSFLSSAGFYRKFIKDFSKIALPLTSLLQKDVPFVIDDKCKKAFNELKKRLVSTPILQSPN

SwissProt top hitse value%identityAlignment
P03359 Gag-Pol polyprotein8.4e-0936.71Show/hide
Query:  AKIDVIQKLSYPTCLKDVRSFLSSAGFYRKFIKDFSKIALPLTSLLQKDVPFVIDDKCKKAFNELKKRLVSTPILQSPN
        A+   + K+  PT  + VR FL +AGF R +I  F+ +A PL  L ++ +PF+  ++ +KAF+ +K+ L+S P L  P+
Subjt:  AKIDVIQKLSYPTCLKDVRSFLSSAGFYRKFIKDFSKIALPLTSLLQKDVPFVIDDKCKKAFNELKKRLVSTPILQSPN

P04323 Retrovirus-related Pol polyprotein from transposon 17.61.4e-0839.24Show/hide
Query:  KIDVIQKLSYPTCLKDVRSFLSSAGFYRKFIKDFSKIALPLTSLLQKDVPF-VIDDKCKKAFNELKKRLVSTPILQSPN
        KI+ IQK   PT  K++++FL   G+YRKFI +F+ IA P+T  L+K++     + +   AF +LK  +   PIL+ P+
Subjt:  KIDVIQKLSYPTCLKDVRSFLSSAGFYRKFIKDFSKIALPLTSLLQKDVPF-VIDDKCKKAFNELKKRLVSTPILQSPN

P10394 Retrovirus-related Pol polyprotein from transposon 4122.6e-1039.51Show/hide
Query:  DKAKIDVIQKLSYPTCLKDVRSFLSSAGFYRKFIKDFSKIALPLTSLLQKDVPFVIDDKCKKAFNELKKRLVSTPILQSPN
        D  K DVIQ    P      R F++   +YR+FIK+F+  +  +T L +K+VPF   D+C+KAF  LK +L++  +LQ P+
Subjt:  DKAKIDVIQKLSYPTCLKDVRSFLSSAGFYRKFIKDFSKIALPLTSLLQKDVPFVIDDKCKKAFNELKKRLVSTPILQSPN

P21414 Gag-Pol polyprotein4.9e-0936.71Show/hide
Query:  AKIDVIQKLSYPTCLKDVRSFLSSAGFYRKFIKDFSKIALPLTSLLQKDVPFVIDDKCKKAFNELKKRLVSTPILQSPN
        A+   + K+  PT  + VR FL +AGF R +I  F+ +A PL  L ++ +PF+  ++ ++AF+ +KK L+S P L  P+
Subjt:  AKIDVIQKLSYPTCLKDVRSFLSSAGFYRKFIKDFSKIALPLTSLLQKDVPFVIDDKCKKAFNELKKRLVSTPILQSPN

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus9.9e-1034.04Show/hide
Query:  VSHDKAKIDVIQKLSYPTCLKDVRSFLSSAGFYRKFIKDFSKIALPLTSLLQ-----------KDVPFVIDDKCKKAFNELKKRLVSTPILQSP
        +  D  K+  I ++  PT +K+++ FL    +YRKFI+D++K+A PLT+L +             VP  +D+   ++FN+LK  L S+ IL  P
Subjt:  VSHDKAKIDVIQKLSYPTCLKDVRSFLSSAGFYRKFIKDFSKIALPLTSLLQ-----------KDVPFVIDDKCKKAFNELKKRLVSTPILQSP

Arabidopsis top hitse value%identityAlignment
ATMG00860.1 DNA/RNA polymerases superfamily protein7.3e-0834.52Show/hide
Query:  VSHDKAKIDVIQKLSYPTCLKDVRSFLSSAGFYRKFIKDFSKIALPLTSLLQKDVPFVIDDKCKKAFNELKKRLVSTPILQSPN
        VS D AK++ +     P    ++R FL   G+YR+F+K++ KI  PLT LL+K+      +    AF  LK  + + P+L  P+
Subjt:  VSHDKAKIDVIQKLSYPTCLKDVRSFLSSAGFYRKFIKDFSKIALPLTSLLQKDVPFVIDDKCKKAFNELKKRLVSTPILQSPN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTATCACATGATAAAGCAAAAATTGATGTTATACAAAAATTGTCATATCCTACTTGTCTAAAAGATGTTAGATCTTTCCTTAGTAGTGCCGGCTTTTATAGAAAGTT
TATAAAGGATTTTTCTAAAATTGCTTTACCTCTAACTTCTCTCTTGCAAAAAGATGTGCCGTTTGTGATTGATGACAAATGTAAAAAAGCATTCAATGAACTCAAGAAAA
GGTTAGTCTCTACTCCTATCCTTCAATCTCCTAATTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTATCACATGATAAAGCAAAAATTGATGTTATACAAAAATTGTCATATCCTACTTGTCTAAAAGATGTTAGATCTTTCCTTAGTAGTGCCGGCTTTTATAGAAAGTT
TATAAAGGATTTTTCTAAAATTGCTTTACCTCTAACTTCTCTCTTGCAAAAAGATGTGCCGTTTGTGATTGATGACAAATGTAAAAAAGCATTCAATGAACTCAAGAAAA
GGTTAGTCTCTACTCCTATCCTTCAATCTCCTAATTAG
Protein sequenceShow/hide protein sequence
MVSHDKAKIDVIQKLSYPTCLKDVRSFLSSAGFYRKFIKDFSKIALPLTSLLQKDVPFVIDDKCKKAFNELKKRLVSTPILQSPN