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PI0004864 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0004864
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Descriptionphotosystem II 5 kDa protein, chloroplastic
Genome locationchr05:22015442..22016182
RNA-Seq ExpressionPI0004864
SyntenyPI0004864
Gene Ontology termsNA
InterPro domainsIPR040296 - Photosystem II 5kDa protein, chloroplastic


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6570402.1 Photosystem II 5 kDa protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]1.8e-2977.88Show/hide
Query:  MASMAMTASFLPATTAKQPS---ATARRALIVAKASTS----NETSNVNLEVKNVKVESRQGRRELVAAAVTVAAATLAKVAMADEPARGSPEAKQKYAP
        MASM++TASFLP  TA QPS   A ARRAL V KASTS    +  SN NLE+KNVKVES QGRRELVAAAVTVAAAT AK AMADEP RGS EAKQKYAP
Subjt:  MASMAMTASFLPATTAKQPS---ATARRALIVAKASTS----NETSNVNLEVKNVKVESRQGRRELVAAAVTVAAATLAKVAMADEPARGSPEAKQKYAP

Query:  ICVTMPTARICRK
        ICVTMPTARICRK
Subjt:  ICVTMPTARICRK

XP_004143237.1 photosystem II 5 kDa protein, chloroplastic [Cucumis sativus]1.1e-3991.51Show/hide
Query:  MASMAMTASFLPATTAKQPSATARRALIVAKASTSNETSNVNLEVKNVKVESRQGRRELVAAAVTVAAATLAKVAMADEPARGSPEAKQKYAPICVTMPT
        MASMAMTASFLP T  KQPS+TARR LIVAKASTSN+ SNVN+EVKNVKVESRQGRRELVAAAVTVAAATLAK AMADEPARGSPEAKQKYAPICVTMPT
Subjt:  MASMAMTASFLPATTAKQPSATARRALIVAKASTSNETSNVNLEVKNVKVESRQGRRELVAAAVTVAAATLAKVAMADEPARGSPEAKQKYAPICVTMPT

Query:  ARICRK
        ARICRK
Subjt:  ARICRK

XP_008449703.1 PREDICTED: photosystem II 5 kDa protein, chloroplastic [Cucumis melo]3.4e-4195.28Show/hide
Query:  MASMAMTASFLPATTAKQPSATARRALIVAKASTSNETSNVNLEVKNVKVESRQGRRELVAAAVTVAAATLAKVAMADEPARGSPEAKQKYAPICVTMPT
        MASMAMTASFLP T  KQPSAT RRALIVAKASTSNETSNVNLEVKNVKVESRQGRRELVAAAVTVAAATLAK AMADEPARGSPEAKQKYAPICVTMPT
Subjt:  MASMAMTASFLPATTAKQPSATARRALIVAKASTSNETSNVNLEVKNVKVESRQGRRELVAAAVTVAAATLAKVAMADEPARGSPEAKQKYAPICVTMPT

Query:  ARICRK
        ARICRK
Subjt:  ARICRK

XP_022944588.1 photosystem II 5 kDa protein, chloroplastic [Cucurbita moschata]4.6e-3076.36Show/hide
Query:  MASMAMTASFLPATTAKQPSATARRALIVAKASTS----NETSNVNLEVKNVKVESRQGRRELVAAAVTVAAATLAKVAMADEPARGSPEAKQKYAPICV
        MASM++TASFLP T  +  +A ARRAL V KASTS    +  SN NLE+KNVKVES QGRRELVAAAVTVAAAT AK AMADEP RGS EAKQKYAPICV
Subjt:  MASMAMTASFLPATTAKQPSATARRALIVAKASTS----NETSNVNLEVKNVKVESRQGRRELVAAAVTVAAATLAKVAMADEPARGSPEAKQKYAPICV

Query:  TMPTARICRK
        TMPTARICRK
Subjt:  TMPTARICRK

XP_038901593.1 photosystem II 5 kDa protein, chloroplastic [Benincasa hispida]2.7e-3888.68Show/hide
Query:  MASMAMTASFLPATTAKQPSATARRALIVAKASTSNETSNVNLEVKNVKVESRQGRRELVAAAVTVAAATLAKVAMADEPARGSPEAKQKYAPICVTMPT
        MASMAMTASFLPAT  KQPS  ARRAL+VAKASTS++ SNVNLE+KNVKVE+RQGRRELVAAAVTVAAATLAK AMADEP RGSPEAKQKYAPICVTMPT
Subjt:  MASMAMTASFLPATTAKQPSATARRALIVAKASTSNETSNVNLEVKNVKVESRQGRRELVAAAVTVAAATLAKVAMADEPARGSPEAKQKYAPICVTMPT

Query:  ARICRK
        ARICRK
Subjt:  ARICRK

TrEMBL top hitse value%identityAlignment
A0A0A0KIB2 Uncharacterized protein5.3e-4091.51Show/hide
Query:  MASMAMTASFLPATTAKQPSATARRALIVAKASTSNETSNVNLEVKNVKVESRQGRRELVAAAVTVAAATLAKVAMADEPARGSPEAKQKYAPICVTMPT
        MASMAMTASFLP T  KQPS+TARR LIVAKASTSN+ SNVN+EVKNVKVESRQGRRELVAAAVTVAAATLAK AMADEPARGSPEAKQKYAPICVTMPT
Subjt:  MASMAMTASFLPATTAKQPSATARRALIVAKASTSNETSNVNLEVKNVKVESRQGRRELVAAAVTVAAATLAKVAMADEPARGSPEAKQKYAPICVTMPT

Query:  ARICRK
        ARICRK
Subjt:  ARICRK

A0A1S3BML8 photosystem II 5 kDa protein, chloroplastic1.7e-4195.28Show/hide
Query:  MASMAMTASFLPATTAKQPSATARRALIVAKASTSNETSNVNLEVKNVKVESRQGRRELVAAAVTVAAATLAKVAMADEPARGSPEAKQKYAPICVTMPT
        MASMAMTASFLP T  KQPSAT RRALIVAKASTSNETSNVNLEVKNVKVESRQGRRELVAAAVTVAAATLAK AMADEPARGSPEAKQKYAPICVTMPT
Subjt:  MASMAMTASFLPATTAKQPSATARRALIVAKASTSNETSNVNLEVKNVKVESRQGRRELVAAAVTVAAATLAKVAMADEPARGSPEAKQKYAPICVTMPT

Query:  ARICRK
        ARICRK
Subjt:  ARICRK

A0A5A7TID9 Photosystem II 5 kDa protein1.7e-4195.28Show/hide
Query:  MASMAMTASFLPATTAKQPSATARRALIVAKASTSNETSNVNLEVKNVKVESRQGRRELVAAAVTVAAATLAKVAMADEPARGSPEAKQKYAPICVTMPT
        MASMAMTASFLP T  KQPSAT RRALIVAKASTSNETSNVNLEVKNVKVESRQGRRELVAAAVTVAAATLAK AMADEPARGSPEAKQKYAPICVTMPT
Subjt:  MASMAMTASFLPATTAKQPSATARRALIVAKASTSNETSNVNLEVKNVKVESRQGRRELVAAAVTVAAATLAKVAMADEPARGSPEAKQKYAPICVTMPT

Query:  ARICRK
        ARICRK
Subjt:  ARICRK

A0A6J1FY72 photosystem II 5 kDa protein, chloroplastic2.2e-3076.36Show/hide
Query:  MASMAMTASFLPATTAKQPSATARRALIVAKASTS----NETSNVNLEVKNVKVESRQGRRELVAAAVTVAAATLAKVAMADEPARGSPEAKQKYAPICV
        MASM++TASFLP T  +  +A ARRAL V KASTS    +  SN NLE+KNVKVES QGRRELVAAAVTVAAAT AK AMADEP RGS EAKQKYAPICV
Subjt:  MASMAMTASFLPATTAKQPSATARRALIVAKASTS----NETSNVNLEVKNVKVESRQGRRELVAAAVTVAAATLAKVAMADEPARGSPEAKQKYAPICV

Query:  TMPTARICRK
        TMPTARICRK
Subjt:  TMPTARICRK

A0A6J1J874 photosystem II 5 kDa protein, chloroplastic2.2e-3076.36Show/hide
Query:  MASMAMTASFLPATTAKQPSATARRALIVAKASTS----NETSNVNLEVKNVKVESRQGRRELVAAAVTVAAATLAKVAMADEPARGSPEAKQKYAPICV
        MASM++TASFLP T  +  +A ARRAL V KASTS    +  SN NLE+KNVKVES QGRRELVAAAVTVAAAT AK AMADEP RGS EAKQKYAPICV
Subjt:  MASMAMTASFLPATTAKQPSATARRALIVAKASTS----NETSNVNLEVKNVKVESRQGRRELVAAAVTVAAATLAKVAMADEPARGSPEAKQKYAPICV

Query:  TMPTARICRK
        TMPTARICRK
Subjt:  TMPTARICRK

SwissProt top hitse value%identityAlignment
B3EWI4 Photosystem II 5 kDa protein, chloroplastic1.6e-1248.62Show/hide
Query:  MASMAMTASFLPATT---AKQPSATARRALIVAKASTSNETSNVNLEVKNVKVESRQGRRELVAAAVTVAAATLAKVAMAD-EPARGSPEAKQKYAPICV
        MAS+ M +SFL  +T   AK PSA  RR +++ KA    E    N+ +   +     GRREL  A    AA ++AK AMAD EP RG+PEAK+KY+ +CV
Subjt:  MASMAMTASFLPATT---AKQPSATARRALIVAKASTSNETSNVNLEVKNVKVESRQGRRELVAAAVTVAAATLAKVAMAD-EPARGSPEAKQKYAPICV

Query:  TMPTARICR
        T PTARICR
Subjt:  TMPTARICR

P31336 Photosystem II 5 kDa protein, chloroplastic9.1e-1350.47Show/hide
Query:  MASMAMTASFLPAT--TAKQPSATARRALIVAKASTSNETSNVNLEVKNVKVESRQGRRELVAAAVTVAAATLAKVAMADEPARGSPEAKQKYAPICVTM
        MAS+ MT SFL  T  T   P  T RR L+VA A+   +  +V +  +  K E   GRRE++ AA   A  ++A VA A EP RGS EAK+ YAP+CVTM
Subjt:  MASMAMTASFLPAT--TAKQPSATARRALIVAKASTSNETSNVNLEVKNVKVESRQGRRELVAAAVTVAAATLAKVAMADEPARGSPEAKQKYAPICVTM

Query:  PTARICR
        PTARICR
Subjt:  PTARICR

Q39195 Photosystem II 5 kDa protein, chloroplastic2.0e-1556.07Show/hide
Query:  MASMAMTASFLPATTAKQPSATARRALIVAKASTSNETSNVNLEVKNVKVESRQGRRELVAAAVTVAAATLAKVAMA--DEPARGSPEAKQKYAPICVTM
        MASM MTA+F PA  AK PSAT  R L V +ASTS+ T   +LEVK  +  S   RR+L+  A   A  +LAKVAMA  +EP RG+  AK+KYA +CVTM
Subjt:  MASMAMTASFLPATTAKQPSATARRALIVAKASTSNETSNVNLEVKNVKVESRQGRRELVAAAVTVAAATLAKVAMA--DEPARGSPEAKQKYAPICVTM

Query:  PTARICR
        PTA+ICR
Subjt:  PTARICR

Arabidopsis top hitse value%identityAlignment
AT1G51400.1 Photosystem II 5 kD protein3.1e-1655.05Show/hide
Query:  MASMAMTASFLPATTAKQP---SATARRALIVAKASTSNETSNVNLEVKNVKVESRQGRRELVAAAVTVAAATLAKVAMA-DEPARGSPEAKQKYAPICV
        MASM MT+SFLP T +  P   S+ +RR+L V KAS S  T+  +LE K  + +S + RR+LV  A   A  +LAKVAMA DEP RG+  AK+KYAP+CV
Subjt:  MASMAMTASFLPATTAKQP---SATARRALIVAKASTSNETSNVNLEVKNVKVESRQGRRELVAAAVTVAAATLAKVAMA-DEPARGSPEAKQKYAPICV

Query:  TMPTARICR
        TMPTA+ICR
Subjt:  TMPTARICR

AT3G21055.1 photosystem II subunit T1.4e-1656.07Show/hide
Query:  MASMAMTASFLPATTAKQPSATARRALIVAKASTSNETSNVNLEVKNVKVESRQGRRELVAAAVTVAAATLAKVAMA--DEPARGSPEAKQKYAPICVTM
        MASM MTA+F PA  AK PSAT  R L V +ASTS+ T   +LEVK  +  S   RR+L+  A   A  +LAKVAMA  +EP RG+  AK+KYA +CVTM
Subjt:  MASMAMTASFLPATTAKQPSATARRALIVAKASTSNETSNVNLEVKNVKVESRQGRRELVAAAVTVAAATLAKVAMA--DEPARGSPEAKQKYAPICVTM

Query:  PTARICR
        PTA+ICR
Subjt:  PTARICR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCCATGGCGATGACAGCTTCCTTCCTTCCCGCCACCACTGCCAAGCAACCCTCCGCCACCGCCCGTCGAGCCCTTATTGTTGCCAAAGCCTCAACCTCTAACGA
AACCTCCAATGTCAACTTGGAGGTCAAGAATGTGAAGGTAGAGAGTAGGCAAGGGCGGCGGGAGTTGGTGGCGGCTGCTGTCACAGTAGCAGCAGCGACCTTGGCGAAGG
TAGCGATGGCGGATGAGCCGGCTCGTGGGTCTCCTGAAGCCAAGCAGAAGTATGCTCCAATCTGTGTCACAATGCCTACTGCCCGTATTTGCCGCAAGTGA
mRNA sequenceShow/hide mRNA sequence
AAAGAATCAACATGAACCTTCAATCACTTCACTTCCCCACACTCCCAAACATAACTATATCCTATTTCTCCTTCACCCAATTCCTCAACTACCAACAATCTCTCTAACCC
CAATTTCTCAAATTTCCTAAATATGGCTTCCATGGCGATGACAGCTTCCTTCCTTCCCGCCACCACTGCCAAGCAACCCTCCGCCACCGCCCGTCGAGCCCTTATTGTTG
CCAAAGCCTCAACCTCTAACGAAACCTCCAATGTCAACTTGGAGGTCAAGAATGTGAAGGTAGAGAGTAGGCAAGGGCGGCGGGAGTTGGTGGCGGCTGCTGTCACAGTA
GCAGCAGCGACCTTGGCGAAGGTAGCGATGGCGGATGAGCCGGCTCGTGGGTCTCCTGAAGCCAAGCAGAAGTATGCTCCAATCTGTGTCACAATGCCTACTGCCCGTAT
TTGCCGCAAGTGATTTGAAGAGATGTTTTTTCTCTGTTGTCTTTCTTCTTCTTGTCTATTAAAACCCTTTCATTTGGTCTCAGACTTTGGAGTTTGATTGTAAAATCTGT
AAAACAAAGCTATGAATTGCCATGAATCTCTCTCTTCATGTCTTTTTTTCTTGTTTTTGCCTTTCTCAACCTCAAACTTCATTCAAGTAATTTTTCTTCACATTTTATCA
ATGTTGTTGATGATCATAACACTATACAAACACCACATTTGATAATAACTCACTCAAAGTAGTTGCAAATTAGAACTTTCA
Protein sequenceShow/hide protein sequence
MASMAMTASFLPATTAKQPSATARRALIVAKASTSNETSNVNLEVKNVKVESRQGRRELVAAAVTVAAATLAKVAMADEPARGSPEAKQKYAPICVTMPTARICRK