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PI0004879 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0004879
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon RE2
Genome locationchr12:16874027..16879984
RNA-Seq ExpressionPI0004879
SyntenyPI0004879
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0052833.1 uncharacterized protein E6C27_scaffold773G00310 [Cucumis melo var. makuwa]2.6e-1674.19Show/hide
Query:  MVAQQNSQYLGTQNYPSNAWLADSGCNAHVTSDIGNISISNEYNGEDNISVGSSQSIPITHT
        +VAQQNSQYL TQ YPSNAWLADSGCNA VT++ GN+ I+N Y+GED+ISV S QS+PITHT
Subjt:  MVAQQNSQYLGTQNYPSNAWLADSGCNAHVTSDIGNISISNEYNGEDNISVGSSQSIPITHT

KAE8645659.1 hypothetical protein Csa_020439 [Cucumis sativus]6.5e-0749.21Show/hide
Query:  MVAQQNSQYLGTQNYPSNAWLADSGCNAHVTSDIGNISISNEYNGEDNISVGSSQSIPITHTG
        MVA QN+ +L   N  S   L DSGCN H+TSD+  +S++ EYNGE+ + VG+ Q+ PI+H+G
Subjt:  MVAQQNSQYLGTQNYPSNAWLADSGCNAHVTSDIGNISISNEYNGEDNISVGSSQSIPITHTG

XP_022150845.1 uncharacterized protein LOC111018892 [Momordica charantia]3.3e-1156.52Show/hide
Query:  MVAQQNSQYLGTQNYPSNAWLADSGCNAHVTSDIGNI---SISNEYNGEDNISVGSSQSIPITHTGSGE
        MVA QN+ YL   N     WLADS CN H+T+D+ N+   SI+++YNGE+NISVGS QS PITH G G+
Subjt:  MVAQQNSQYLGTQNYPSNAWLADSGCNAHVTSDIGNI---SISNEYNGEDNISVGSSQSIPITHTGSGE

XP_022156563.1 uncharacterized protein LOC111023438 [Momordica charantia]4.5e-0853.85Show/hide
Query:  MVAQQNSQYLGTQNYPSNAWLADSGCNAHVTSDIGNISISNEYNGEDNISVGSSQSIPITHTGSG
        MVA  N   L + N PS  WL DSGCNAHVT+D+  +S ++EY+G++ I VG+ QS+PI HT SG
Subjt:  MVAQQNSQYLGTQNYPSNAWLADSGCNAHVTSDIGNISISNEYNGEDNISVGSSQSIPITHTGSG

XP_022158189.1 uncharacterized protein LOC111024722 [Momordica charantia]4.5e-0853.7Show/hide
Query:  TQNYPSNAWLADSGCNAHVTSDIGNISISNEYNGEDNISVGSSQSIPITHTGSG
        + N  +N WL+DSGCNAHVT+D+ N+++ + YNGE+ ++VG+ QS+ I+HTGSG
Subjt:  TQNYPSNAWLADSGCNAHVTSDIGNISISNEYNGEDNISVGSSQSIPITHTGSG

TrEMBL top hitse value%identityAlignment
A0A5A7UA88 Uncharacterized protein1.3e-1674.19Show/hide
Query:  MVAQQNSQYLGTQNYPSNAWLADSGCNAHVTSDIGNISISNEYNGEDNISVGSSQSIPITHT
        +VAQQNSQYL TQ YPSNAWLADSGCNA VT++ GN+ I+N Y+GED+ISV S QS+PITHT
Subjt:  MVAQQNSQYLGTQNYPSNAWLADSGCNAHVTSDIGNISISNEYNGEDNISVGSSQSIPITHT

A0A6J1D9L6 uncharacterized protein LOC1110188921.6e-1156.52Show/hide
Query:  MVAQQNSQYLGTQNYPSNAWLADSGCNAHVTSDIGNI---SISNEYNGEDNISVGSSQSIPITHTGSGE
        MVA QN+ YL   N     WLADS CN H+T+D+ N+   SI+++YNGE+NISVGS QS PITH G G+
Subjt:  MVAQQNSQYLGTQNYPSNAWLADSGCNAHVTSDIGNI---SISNEYNGEDNISVGSSQSIPITHTGSGE

A0A6J1DEA3 uncharacterized protein LOC1110196404.1e-0757.14Show/hide
Query:  YPSNAWLADSGCNAHVTSDIGNISISNEYNGEDNISVGSSQSIPITHTG
        + S  WL DS CNAH+TS + N+++S EYNGE  I+VG+ Q +PITHTG
Subjt:  YPSNAWLADSGCNAHVTSDIGNISISNEYNGEDNISVGSSQSIPITHTG

A0A6J1DQZ0 uncharacterized protein LOC1110234382.2e-0853.85Show/hide
Query:  MVAQQNSQYLGTQNYPSNAWLADSGCNAHVTSDIGNISISNEYNGEDNISVGSSQSIPITHTGSG
        MVA  N   L + N PS  WL DSGCNAHVT+D+  +S ++EY+G++ I VG+ QS+PI HT SG
Subjt:  MVAQQNSQYLGTQNYPSNAWLADSGCNAHVTSDIGNISISNEYNGEDNISVGSSQSIPITHTGSG

A0A6J1DYN6 uncharacterized protein LOC1110247222.2e-0853.7Show/hide
Query:  TQNYPSNAWLADSGCNAHVTSDIGNISISNEYNGEDNISVGSSQSIPITHTGSG
        + N  +N WL+DSGCNAHVT+D+ N+++ + YNGE+ ++VG+ QS+ I+HTGSG
Subjt:  TQNYPSNAWLADSGCNAHVTSDIGNISISNEYNGEDNISVGSSQSIPITHTGSG

SwissProt top hitse value%identityAlignment
Q94HW2 Retrovirus-related Pol polyprotein from transposon RE11.8e-0750Show/hide
Query:  YPSNAWLADSGCNAHVTSDIGNISISNEYNGEDNISVGSSQSIPITHTGS
        Y SN WL DSG   H+TSD  N+S+   Y G D++ V    +IPI+HTGS
Subjt:  YPSNAWLADSGCNAHVTSDIGNISISNEYNGEDNISVGSSQSIPITHTGS

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE23.9e-0748Show/hide
Query:  YPSNAWLADSGCNAHVTSDIGNISISNEYNGEDNISVGSSQSIPITHTGS
        Y +N WL DSG   H+TSD  N+S    Y G D++ +    +IPITHTGS
Subjt:  YPSNAWLADSGCNAHVTSDIGNISISNEYNGEDNISVGSSQSIPITHTGS

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTGCCCAACAAAACTCACAGTATCTTGGTACTCAAAACTATCCTTCAAATGCTTGGCTGGCAGATTCAGGATGCAATGCTCATGTTACCTCAGACATTGGCAATAT
CTCCATATCAAATGAATACAATGGTGAAGACAACATCTCCGTTGGCAGTAGTCAGTCAATTCCCATTACTCATACTGGATCAGGTGAAAGTGGCCGATTGCTGACTCAAT
AA
mRNA sequenceShow/hide mRNA sequence
ATGGTTGCCCAACAAAACTCACAGTATCTTGGTACTCAAAACTATCCTTCAAATGCTTGGCTGGCAGATTCAGGATGCAATGCTCATGTTACCTCAGACATTGGCAATAT
CTCCATATCAAATGAATACAATGGTGAAGACAACATCTCCGTTGGCAGTAGTCAGTCAATTCCCATTACTCATACTGGATCAGGTGAAAGTGGCCGATTGCTGACTCAAT
AA
Protein sequenceShow/hide protein sequence
MVAQQNSQYLGTQNYPSNAWLADSGCNAHVTSDIGNISISNEYNGEDNISVGSSQSIPITHTGSGESGRLLTQ