CuGenDBv2

Gene ID	PI0004880
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	regulator of nonsense transcripts UPF3-like
Genome location	chr09:21646071..21652095
RNA-Seq Expression	PI0004880
Synteny	PI0004880
Gene Ontology terms	GO:0000184 - nuclear-transcribed mRNA catabolic process, nonsense-mediated decay (biological process) GO:0045727 - positive regulation of translation (biological process) GO:0005730 - nucleolus (cellular component) GO:0005737 - cytoplasm (cellular component) GO:0003729 - mRNA binding (molecular function)
InterPro domains	IPR005120 - UPF3 domain IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily IPR035979 - RNA-binding domain superfamily IPR039722 - Nonsense-mediated mRNA decay protein 3

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004141560.1 regulator of nonsense transcripts UPF3 isoform X2 [Cucumis sativus]

1.1e-262

94.21

Show/hide

Query:  MKDPLERTKVVIRHLPPSLSHSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPR
        MKDPLERTKVVIRHLPPSLSHSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPR
Subjt:  MKDPLERTKVVIRHLPPSLSHSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPR

Query:  SSTKKDGREGTIYKDPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQCFDFIGIFSSSEGQRGGAASSRKPES
        SSTKKDGREGTIYKDPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQ     G     + +RGGAASSRKPES
Subjt:  SSTKKDGREGTIYKDPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQCFDFIGIFSSSEGQRGGAASSRKPES

Query:  NSMKRGMEKKKYILKDSVKNTNRRDKSNFILVPRREDQSATSS--GISDVGTADFGKKKILLLKGKERDISHVSDDMLLLQSVTSSGNSPASASKHNQRR
        NSMKRGMEKKKYILKDSVKNTNRRDKSNFILVPRREDQSATSS  GISDVGTADFGKKKILLLKGKERDISH       LQS TSSGNSPASASKHN RR
Subjt:  NSMKRGMEKKKYILKDSVKNTNRRDKSNFILVPRREDQSATSS--GISDVGTADFGKKKILLLKGKERDISHVSDDMLLLQSVTSSGNSPASASKHNQRR

Query:  EAGGSVIRSILLNNEARHGQSSSVAQSHQKIQILNSDNGKRPPRPINARSGSNDISSNEPNPSGSEGDGKRAPDNKFSKKELHGLGSASEKQEKRIRNKD
        EAGG VIRSILLNNEARHGQSSSVAQSHQKIQILNSDNGKRPPRP NARSGSNDISSNEPNPSGSEGDGKRA DNKFSKKELHGLGSASEKQEKRIRNKD
Subjt:  EAGGSVIRSILLNNEARHGQSSSVAQSHQKIQILNSDNGKRPPRPINARSGSNDISSNEPNPSGSEGDGKRAPDNKFSKKELHGLGSASEKQEKRIRNKD

Query:  RPDRGVWAPRSRSDASVSQLEESSVSQSSHLLSDSVDAYRGEMKEDIHGSRTGDVTTIVSGRNSSVENGSVRHVGRRGAGHVMKDDGSLNPNEGKPSKRG
        RPDRGVWAPRSRSDASVSQLEESSV QSSHLLSDSV+A+RGEMKEDIHGSRTGDVTTIVSGRNSSVENGSVRHVGRRGAGHVMKDDGSLNPNEGKPSKRG
Subjt:  RPDRGVWAPRSRSDASVSQLEESSVSQSSHLLSDSVDAYRGEMKEDIHGSRTGDVTTIVSGRNSSVENGSVRHVGRRGAGHVMKDDGSLNPNEGKPSKRG

Query:  VAGGHEKQVWVQKSSSGS
        VAGGHEKQVWVQKSSSGS
Subjt:  VAGGHEKQVWVQKSSSGS

XP_008459659.1 PREDICTED: regulator of nonsense transcripts UPF3 isoform X1 [Cucumis melo]

4.0e-268

95.37

Show/hide

Query:  MKDPLERTKVVIRHLPPSLSHSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPR
        MKDPLERTKVVIRHLPPSLSHSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPR
Subjt:  MKDPLERTKVVIRHLPPSLSHSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPR

Query:  SSTKKDGREGTIYKDPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQCFDFIGIFSSSEGQRGGAASSRKPES
        SSTKKDGREGTIYKDPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQ     G     + +RGGAASSRKPES
Subjt:  SSTKKDGREGTIYKDPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQCFDFIGIFSSSEGQRGGAASSRKPES

Query:  NSMKRGMEKKKYILKDSVKNTNRRDKSNFILVPRREDQSATSS--GISDVGTADFGKKKILLLKGKERDISHVSDDMLLLQSVTSSGNSPASASKHNQRR
        NSMKRGMEKKKYILKDSVKNTNRRDKSNFILVPRR+DQSA SS  GISDVG ADFGKKKILLLKGKERDISHVSDDML LQS TSSGNSPASASKHN RR
Subjt:  NSMKRGMEKKKYILKDSVKNTNRRDKSNFILVPRREDQSATSS--GISDVGTADFGKKKILLLKGKERDISHVSDDMLLLQSVTSSGNSPASASKHNQRR

Query:  EAGGSVIRSILLNNEARHGQSSSVAQSHQKIQILNSDNGKRPPRPINARSGSNDISSNEPNPSGSEGDGKRAPDNKFSKKELHGLGSASEKQEKRIRNKD
        EAGGSVIRSILLNNEARHGQSSSVAQSHQKIQILNSDNGKRPPRP NARSGSNDISSNEPNPSGSEGDGKRAPDNKFSKKELHGLGSASEKQEKRIRNKD
Subjt:  EAGGSVIRSILLNNEARHGQSSSVAQSHQKIQILNSDNGKRPPRPINARSGSNDISSNEPNPSGSEGDGKRAPDNKFSKKELHGLGSASEKQEKRIRNKD

Query:  RPDRGVWAPRSRSDASVSQLEESSVSQSSHLLSDSVDAYRGEMKEDIHGSRTGDVTTIVSGRNSSVENGSVRHVGRRGAGHVMKDDGSLNPNEGKPSKRG
        RPDRGVWAPRSRSDASVSQLEESSVSQSSHLLSDSV+AYRGEMKEDIHGSRT DVTTIVSGRNSSVENGSVRHVGRRGAGHVMKDDGSLNPNEGKPSKRG
Subjt:  RPDRGVWAPRSRSDASVSQLEESSVSQSSHLLSDSVDAYRGEMKEDIHGSRTGDVTTIVSGRNSSVENGSVRHVGRRGAGHVMKDDGSLNPNEGKPSKRG

Query:  VAGGHEKQVWVQKSSSGS
        VAGGHEKQVWVQKSSSGS
Subjt:  VAGGHEKQVWVQKSSSGS

XP_008459660.1 PREDICTED: regulator of nonsense transcripts UPF3 isoform X2 [Cucumis melo]

6.5e-263

94.21

Show/hide

Query:  MKDPLERTKVVIRHLPPSLSHSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPR
        MKDPLERTKVVIRHLPPSLSHSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPR
Subjt:  MKDPLERTKVVIRHLPPSLSHSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPR

Query:  SSTKKDGREGTIYKDPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQCFDFIGIFSSSEGQRGGAASSRKPES
        SSTKKDGREGTIYKDPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQ     G     + +RGGAASSRKPES
Subjt:  SSTKKDGREGTIYKDPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQCFDFIGIFSSSEGQRGGAASSRKPES

Query:  NSMKRGMEKKKYILKDSVKNTNRRDKSNFILVPRREDQSATSS--GISDVGTADFGKKKILLLKGKERDISHVSDDMLLLQSVTSSGNSPASASKHNQRR
        NSMKRGMEKKKYILKDSVKNTNRRDKSNFILVPRR+DQSA SS  GISDVG ADFGKKKILLLKGKERDISH       LQS TSSGNSPASASKHN RR
Subjt:  NSMKRGMEKKKYILKDSVKNTNRRDKSNFILVPRREDQSATSS--GISDVGTADFGKKKILLLKGKERDISHVSDDMLLLQSVTSSGNSPASASKHNQRR

Query:  EAGGSVIRSILLNNEARHGQSSSVAQSHQKIQILNSDNGKRPPRPINARSGSNDISSNEPNPSGSEGDGKRAPDNKFSKKELHGLGSASEKQEKRIRNKD
        EAGGSVIRSILLNNEARHGQSSSVAQSHQKIQILNSDNGKRPPRP NARSGSNDISSNEPNPSGSEGDGKRAPDNKFSKKELHGLGSASEKQEKRIRNKD
Subjt:  EAGGSVIRSILLNNEARHGQSSSVAQSHQKIQILNSDNGKRPPRPINARSGSNDISSNEPNPSGSEGDGKRAPDNKFSKKELHGLGSASEKQEKRIRNKD

Query:  RPDRGVWAPRSRSDASVSQLEESSVSQSSHLLSDSVDAYRGEMKEDIHGSRTGDVTTIVSGRNSSVENGSVRHVGRRGAGHVMKDDGSLNPNEGKPSKRG
        RPDRGVWAPRSRSDASVSQLEESSVSQSSHLLSDSV+AYRGEMKEDIHGSRT DVTTIVSGRNSSVENGSVRHVGRRGAGHVMKDDGSLNPNEGKPSKRG
Subjt:  RPDRGVWAPRSRSDASVSQLEESSVSQSSHLLSDSVDAYRGEMKEDIHGSRTGDVTTIVSGRNSSVENGSVRHVGRRGAGHVMKDDGSLNPNEGKPSKRG

Query:  VAGGHEKQVWVQKSSSGS
        VAGGHEKQVWVQKSSSGS
Subjt:  VAGGHEKQVWVQKSSSGS

XP_011656113.1 regulator of nonsense transcripts UPF3 isoform X1 [Cucumis sativus]

6.8e-268

95.37

Show/hide

Query:  MKDPLERTKVVIRHLPPSLSHSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPR
        MKDPLERTKVVIRHLPPSLSHSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPR
Subjt:  MKDPLERTKVVIRHLPPSLSHSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPR

Query:  SSTKKDGREGTIYKDPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQCFDFIGIFSSSEGQRGGAASSRKPES
        SSTKKDGREGTIYKDPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQ     G     + +RGGAASSRKPES
Subjt:  SSTKKDGREGTIYKDPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQCFDFIGIFSSSEGQRGGAASSRKPES

Query:  NSMKRGMEKKKYILKDSVKNTNRRDKSNFILVPRREDQSATSS--GISDVGTADFGKKKILLLKGKERDISHVSDDMLLLQSVTSSGNSPASASKHNQRR
        NSMKRGMEKKKYILKDSVKNTNRRDKSNFILVPRREDQSATSS  GISDVGTADFGKKKILLLKGKERDISHVSDDML LQS TSSGNSPASASKHN RR
Subjt:  NSMKRGMEKKKYILKDSVKNTNRRDKSNFILVPRREDQSATSS--GISDVGTADFGKKKILLLKGKERDISHVSDDMLLLQSVTSSGNSPASASKHNQRR

Query:  EAGGSVIRSILLNNEARHGQSSSVAQSHQKIQILNSDNGKRPPRPINARSGSNDISSNEPNPSGSEGDGKRAPDNKFSKKELHGLGSASEKQEKRIRNKD
        EAGG VIRSILLNNEARHGQSSSVAQSHQKIQILNSDNGKRPPRP NARSGSNDISSNEPNPSGSEGDGKRA DNKFSKKELHGLGSASEKQEKRIRNKD
Subjt:  EAGGSVIRSILLNNEARHGQSSSVAQSHQKIQILNSDNGKRPPRPINARSGSNDISSNEPNPSGSEGDGKRAPDNKFSKKELHGLGSASEKQEKRIRNKD

Query:  RPDRGVWAPRSRSDASVSQLEESSVSQSSHLLSDSVDAYRGEMKEDIHGSRTGDVTTIVSGRNSSVENGSVRHVGRRGAGHVMKDDGSLNPNEGKPSKRG
        RPDRGVWAPRSRSDASVSQLEESSV QSSHLLSDSV+A+RGEMKEDIHGSRTGDVTTIVSGRNSSVENGSVRHVGRRGAGHVMKDDGSLNPNEGKPSKRG
Subjt:  RPDRGVWAPRSRSDASVSQLEESSVSQSSHLLSDSVDAYRGEMKEDIHGSRTGDVTTIVSGRNSSVENGSVRHVGRRGAGHVMKDDGSLNPNEGKPSKRG

Query:  VAGGHEKQVWVQKSSSGS
        VAGGHEKQVWVQKSSSGS
Subjt:  VAGGHEKQVWVQKSSSGS

XP_038890175.1 regulator of nonsense transcripts UPF3 isoform X1 [Benincasa hispida]

3.0e-260

92.66

Show/hide

Query:  MKDPLERTKVVIRHLPPSLSHSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPR
        MKDPLERTKVVIRHLPPSL HSDLFHHIHDRF GRFNWSYYRPGKTSQKDQRYARAYIDFTRPEDVFEFAEFFDGH+FVNEKGAQYKAVVEYAPSQRVPR
Subjt:  MKDPLERTKVVIRHLPPSLSHSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPR

Query:  SSTKKDGREGTIYKDPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQCFDFIGIFSSSEGQRGGAASSRKPES
        SSTKKDGREGTIYKDPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQSGAAKE PIVTPLMEFVRQKRAVESGTQ     G     + +RGGAASSRKPE 
Subjt:  SSTKKDGREGTIYKDPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQCFDFIGIFSSSEGQRGGAASSRKPES

Query:  NSMKRGMEKKKYILKDSVKNTNRRDKSNFILVPRREDQSATSS--GISDVGTADFGKKKILLLKGKERDISHVSDDMLLLQSVTSSGNSPASASKHNQRR
        NSMKRGMEKKKYILKDSVKNTNRRDKSNFILVPRREDQSATSS  GISDV TADFGKKKILLLKGKERDISHVSD ML LQS TSS  SPASASKHNQRR
Subjt:  NSMKRGMEKKKYILKDSVKNTNRRDKSNFILVPRREDQSATSS--GISDVGTADFGKKKILLLKGKERDISHVSDDMLLLQSVTSSGNSPASASKHNQRR

Query:  EAGGSVIRSILLNNEARHGQSSSVAQSHQKIQILNSDNGKRPPRPINARSGSNDISSNEPNPSGSEGDGKRAPDNKFSKKELHGLGSASEKQEKRIRNKD
        EA GS+IRSILLNNEARHGQ+SSVAQSH KIQILNSDNGKRPPRPINARSGSND+SSNEPNPSGSEGDGKRAPD KFSKKELHGLGS +EKQEKRIRNKD
Subjt:  EAGGSVIRSILLNNEARHGQSSSVAQSHQKIQILNSDNGKRPPRPINARSGSNDISSNEPNPSGSEGDGKRAPDNKFSKKELHGLGSASEKQEKRIRNKD

Query:  RPDRGVWAPRSRSDASVSQLEESSVSQSSHLLSDSVDAYRGEMKEDIHGSRTGDVTTIVSGRNSSVENGSVRHVGRRGAGHVMKDDGSLNPNEGKPSKRG
        RPDRGVWAPRSRSDASVSQLEESSVSQSSHLLSDSV+AYRGEMKED+HGSRTGDVTT VSGRNSSVENGSVRHVGRRGA HVMKDDGSLNPNEGKPSKRG
Subjt:  RPDRGVWAPRSRSDASVSQLEESSVSQSSHLLSDSVDAYRGEMKEDIHGSRTGDVTTIVSGRNSSVENGSVRHVGRRGAGHVMKDDGSLNPNEGKPSKRG

Query:  VAGGHEKQVWVQKSSSGS
        VAGGHEKQVWVQKSSSGS
Subjt:  VAGGHEKQVWVQKSSSGS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KSY5 Smg4_UPF3 domain-containing protein

3.3e-268

95.37

Show/hide

Query:  MKDPLERTKVVIRHLPPSLSHSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPR
        MKDPLERTKVVIRHLPPSLSHSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPR
Subjt:  MKDPLERTKVVIRHLPPSLSHSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPR

Query:  SSTKKDGREGTIYKDPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQCFDFIGIFSSSEGQRGGAASSRKPES
        SSTKKDGREGTIYKDPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQ     G     + +RGGAASSRKPES
Subjt:  SSTKKDGREGTIYKDPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQCFDFIGIFSSSEGQRGGAASSRKPES

Query:  NSMKRGMEKKKYILKDSVKNTNRRDKSNFILVPRREDQSATSS--GISDVGTADFGKKKILLLKGKERDISHVSDDMLLLQSVTSSGNSPASASKHNQRR
        NSMKRGMEKKKYILKDSVKNTNRRDKSNFILVPRREDQSATSS  GISDVGTADFGKKKILLLKGKERDISHVSDDML LQS TSSGNSPASASKHN RR
Subjt:  NSMKRGMEKKKYILKDSVKNTNRRDKSNFILVPRREDQSATSS--GISDVGTADFGKKKILLLKGKERDISHVSDDMLLLQSVTSSGNSPASASKHNQRR

Query:  EAGGSVIRSILLNNEARHGQSSSVAQSHQKIQILNSDNGKRPPRPINARSGSNDISSNEPNPSGSEGDGKRAPDNKFSKKELHGLGSASEKQEKRIRNKD
        EAGG VIRSILLNNEARHGQSSSVAQSHQKIQILNSDNGKRPPRP NARSGSNDISSNEPNPSGSEGDGKRA DNKFSKKELHGLGSASEKQEKRIRNKD
Subjt:  EAGGSVIRSILLNNEARHGQSSSVAQSHQKIQILNSDNGKRPPRPINARSGSNDISSNEPNPSGSEGDGKRAPDNKFSKKELHGLGSASEKQEKRIRNKD

Query:  RPDRGVWAPRSRSDASVSQLEESSVSQSSHLLSDSVDAYRGEMKEDIHGSRTGDVTTIVSGRNSSVENGSVRHVGRRGAGHVMKDDGSLNPNEGKPSKRG
        RPDRGVWAPRSRSDASVSQLEESSV QSSHLLSDSV+A+RGEMKEDIHGSRTGDVTTIVSGRNSSVENGSVRHVGRRGAGHVMKDDGSLNPNEGKPSKRG
Subjt:  RPDRGVWAPRSRSDASVSQLEESSVSQSSHLLSDSVDAYRGEMKEDIHGSRTGDVTTIVSGRNSSVENGSVRHVGRRGAGHVMKDDGSLNPNEGKPSKRG

Query:  VAGGHEKQVWVQKSSSGS
        VAGGHEKQVWVQKSSSGS
Subjt:  VAGGHEKQVWVQKSSSGS

A0A1S3CB69 regulator of nonsense transcripts UPF3 isoform X1

1.9e-268

95.37

Show/hide

Query:  MKDPLERTKVVIRHLPPSLSHSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPR
        MKDPLERTKVVIRHLPPSLSHSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPR
Subjt:  MKDPLERTKVVIRHLPPSLSHSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPR

Query:  SSTKKDGREGTIYKDPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQCFDFIGIFSSSEGQRGGAASSRKPES
        SSTKKDGREGTIYKDPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQ     G     + +RGGAASSRKPES
Subjt:  SSTKKDGREGTIYKDPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQCFDFIGIFSSSEGQRGGAASSRKPES

Query:  NSMKRGMEKKKYILKDSVKNTNRRDKSNFILVPRREDQSATSS--GISDVGTADFGKKKILLLKGKERDISHVSDDMLLLQSVTSSGNSPASASKHNQRR
        NSMKRGMEKKKYILKDSVKNTNRRDKSNFILVPRR+DQSA SS  GISDVG ADFGKKKILLLKGKERDISHVSDDML LQS TSSGNSPASASKHN RR
Subjt:  NSMKRGMEKKKYILKDSVKNTNRRDKSNFILVPRREDQSATSS--GISDVGTADFGKKKILLLKGKERDISHVSDDMLLLQSVTSSGNSPASASKHNQRR

Query:  EAGGSVIRSILLNNEARHGQSSSVAQSHQKIQILNSDNGKRPPRPINARSGSNDISSNEPNPSGSEGDGKRAPDNKFSKKELHGLGSASEKQEKRIRNKD
        EAGGSVIRSILLNNEARHGQSSSVAQSHQKIQILNSDNGKRPPRP NARSGSNDISSNEPNPSGSEGDGKRAPDNKFSKKELHGLGSASEKQEKRIRNKD
Subjt:  EAGGSVIRSILLNNEARHGQSSSVAQSHQKIQILNSDNGKRPPRPINARSGSNDISSNEPNPSGSEGDGKRAPDNKFSKKELHGLGSASEKQEKRIRNKD

Query:  RPDRGVWAPRSRSDASVSQLEESSVSQSSHLLSDSVDAYRGEMKEDIHGSRTGDVTTIVSGRNSSVENGSVRHVGRRGAGHVMKDDGSLNPNEGKPSKRG
        RPDRGVWAPRSRSDASVSQLEESSVSQSSHLLSDSV+AYRGEMKEDIHGSRT DVTTIVSGRNSSVENGSVRHVGRRGAGHVMKDDGSLNPNEGKPSKRG
Subjt:  RPDRGVWAPRSRSDASVSQLEESSVSQSSHLLSDSVDAYRGEMKEDIHGSRTGDVTTIVSGRNSSVENGSVRHVGRRGAGHVMKDDGSLNPNEGKPSKRG

Query:  VAGGHEKQVWVQKSSSGS
        VAGGHEKQVWVQKSSSGS
Subjt:  VAGGHEKQVWVQKSSSGS

A0A1S3CBX5 regulator of nonsense transcripts UPF3 isoform X2

3.2e-263

94.21

Show/hide

Query:  MKDPLERTKVVIRHLPPSLSHSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPR
        MKDPLERTKVVIRHLPPSLSHSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPR
Subjt:  MKDPLERTKVVIRHLPPSLSHSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPR

Query:  SSTKKDGREGTIYKDPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQCFDFIGIFSSSEGQRGGAASSRKPES
        SSTKKDGREGTIYKDPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQ     G     + +RGGAASSRKPES
Subjt:  SSTKKDGREGTIYKDPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQCFDFIGIFSSSEGQRGGAASSRKPES

Query:  NSMKRGMEKKKYILKDSVKNTNRRDKSNFILVPRREDQSATSS--GISDVGTADFGKKKILLLKGKERDISHVSDDMLLLQSVTSSGNSPASASKHNQRR
        NSMKRGMEKKKYILKDSVKNTNRRDKSNFILVPRR+DQSA SS  GISDVG ADFGKKKILLLKGKERDISH       LQS TSSGNSPASASKHN RR
Subjt:  NSMKRGMEKKKYILKDSVKNTNRRDKSNFILVPRREDQSATSS--GISDVGTADFGKKKILLLKGKERDISHVSDDMLLLQSVTSSGNSPASASKHNQRR

Query:  EAGGSVIRSILLNNEARHGQSSSVAQSHQKIQILNSDNGKRPPRPINARSGSNDISSNEPNPSGSEGDGKRAPDNKFSKKELHGLGSASEKQEKRIRNKD
        EAGGSVIRSILLNNEARHGQSSSVAQSHQKIQILNSDNGKRPPRP NARSGSNDISSNEPNPSGSEGDGKRAPDNKFSKKELHGLGSASEKQEKRIRNKD
Subjt:  EAGGSVIRSILLNNEARHGQSSSVAQSHQKIQILNSDNGKRPPRPINARSGSNDISSNEPNPSGSEGDGKRAPDNKFSKKELHGLGSASEKQEKRIRNKD

Query:  RPDRGVWAPRSRSDASVSQLEESSVSQSSHLLSDSVDAYRGEMKEDIHGSRTGDVTTIVSGRNSSVENGSVRHVGRRGAGHVMKDDGSLNPNEGKPSKRG
        RPDRGVWAPRSRSDASVSQLEESSVSQSSHLLSDSV+AYRGEMKEDIHGSRT DVTTIVSGRNSSVENGSVRHVGRRGAGHVMKDDGSLNPNEGKPSKRG
Subjt:  RPDRGVWAPRSRSDASVSQLEESSVSQSSHLLSDSVDAYRGEMKEDIHGSRTGDVTTIVSGRNSSVENGSVRHVGRRGAGHVMKDDGSLNPNEGKPSKRG

Query:  VAGGHEKQVWVQKSSSGS
        VAGGHEKQVWVQKSSSGS
Subjt:  VAGGHEKQVWVQKSSSGS

A0A6J1D8M3 regulator of nonsense transcripts UPF3 isoform X1

2.8e-251

Show/hide

Query:  MKDPLERTKVVIRHLPPSLSHSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPR
        MKDPLERTKVVIRHLPPSL HSDLFHHI DRFAGR+NW YYRPGKTSQKDQRY+RAYIDFTRPEDVFEFAEFFDGHVFVNEKG QYKAV+EYAPSQRVPR
Subjt:  MKDPLERTKVVIRHLPPSLSHSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPR

Query:  SSTKKDGREGTIYKDPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQCFDFIGIFSSSEGQRGGAASSRKPES
        SSTKKDGR+GTIYKDPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQSG AKETPIVTPLMEFVRQKRAVESGTQ     G   S + +RGG ASSRKPES
Subjt:  SSTKKDGREGTIYKDPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQCFDFIGIFSSSEGQRGGAASSRKPES

Query:  NSMKRGMEKKKYILKDSVKNTNRRDKSNFILVPRREDQSATSS--GISDVGTADFGKKKILLLKGKERDISHVSDDMLLLQSVTSSGNSPASASKHNQRR
        NSMKRGMEKKKYILKDSVKNTNRRDKSNFILVPRR+DQ ATSS  GISDV TAD GKKKILLLKGKERDISHV+D ML LQS +SSGNSP +A+K NQRR
Subjt:  NSMKRGMEKKKYILKDSVKNTNRRDKSNFILVPRREDQSATSS--GISDVGTADFGKKKILLLKGKERDISHVSDDMLLLQSVTSSGNSPASASKHNQRR

Query:  EAGGSVIRSILLNNEARHGQSSSVAQSHQKIQILNSDNGKRPPRPINARSGSNDISSNEPNPSGSEGDGKRAPDNKFSKKELHGLGSASEKQEKRIRNKD
        EA GS+IRSILLNNE RHGQ SSV+QSHQKIQILNSDNGKRPPRPINARSGSND+S+NEPNPSGSEGDGKRAP++KFSKKELHGLGSASEKQEKRIRNKD
Subjt:  EAGGSVIRSILLNNEARHGQSSSVAQSHQKIQILNSDNGKRPPRPINARSGSNDISSNEPNPSGSEGDGKRAPDNKFSKKELHGLGSASEKQEKRIRNKD

Query:  RPDRGVWAPRSRSDASVSQLEESSVSQSSHLLSDSVDAYRGEMKEDIHGSRTGDVTTIVSGRNSSVENGSVRHVGRRGAGHVMKDDGSLNPNEGKPSKRG
        RPDRGVWAPRSRSDA VSQL+ESS+SQSSHLLSDSV+A+R EMK+DIHGSRTGDVTT VSGR SSVENGSVRHVGRRGAGHVMKDDGSLNPNEGK SKRG
Subjt:  RPDRGVWAPRSRSDASVSQLEESSVSQSSHLLSDSVDAYRGEMKEDIHGSRTGDVTTIVSGRNSSVENGSVRHVGRRGAGHVMKDDGSLNPNEGKPSKRG

Query:  VAGGHEKQVWVQKSSSGS
        +AGGHEKQVWVQKSSSGS
Subjt:  VAGGHEKQVWVQKSSSGS

A0A6J1I7G4 regulator of nonsense transcripts UPF3-like isoform X1

2.4e-250

88.61

Show/hide

Query:  MKDPLERTKVVIRHLPPSLSHSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPR
        MKDPLERTKVVIRHLPPSL HSDLFHHIHDRFAGR+NW Y+RPGKTSQK+QRYARAYIDFT PEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPR
Subjt:  MKDPLERTKVVIRHLPPSLSHSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPR

Query:  SSTKKDGREGTIYKDPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQCFDFIGIFSSSEGQRGGAASSRKPES
        SS+KKDGREGTIYKDPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQSG AK+TPIVTPLMEFVRQKRAVESGTQ     G     + +RG AASSRK ES
Subjt:  SSTKKDGREGTIYKDPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQCFDFIGIFSSSEGQRGGAASSRKPES

Query:  NSMKRGMEKKKYILKDSVKNTNRRDKSNFILVPRREDQSATSS--GISDVGTADFGKKKILLLKGKERDISHVSDDMLLLQSVTSSGNSPASASKHNQRR
        NSMKRGMEKKKYILKDS KNTNRRDKSNFILVPRREDQSATSS  GISDVGTAD GKKKILLLKGK RD+SH++D ML  QS TSSGNSPA+A+K NQRR
Subjt:  NSMKRGMEKKKYILKDSVKNTNRRDKSNFILVPRREDQSATSS--GISDVGTADFGKKKILLLKGKERDISHVSDDMLLLQSVTSSGNSPASASKHNQRR

Query:  EAGGSVIRSILLNNEARHGQSSSVAQSHQKIQILNSDNGKRPPRPINARSGSNDISSNEPNPSGSEGDGKRAPDNKFSKKELHGLGSASEKQEKRIRNKD
        EAGGS+IRSILLNN+ARHGQSSSVAQSHQKIQILNSDNGKRPPRPIN+RSGSND+SSN+PNPSGSEGDGKRA +NKF+KKE HGLG+ASEKQEKRIRNKD
Subjt:  EAGGSVIRSILLNNEARHGQSSSVAQSHQKIQILNSDNGKRPPRPINARSGSNDISSNEPNPSGSEGDGKRAPDNKFSKKELHGLGSASEKQEKRIRNKD

Query:  RPDRGVWAPRSRSDASVSQLEESSVSQSSHLLSDSVDAYRGEMKEDIHGSRTGDVTTIVSGRNSSVENGSVRHVGRRGAGHVMKDDGSLNPNEGKPSKRG
        RPDRGVWAPR RSDASVSQL+ESSVSQS+HLLSDSV+AYRGEMK+D+HGSRTGDVTT VSGR+SSVENGSVRHVGRRGA H+MKDDGSLNPNEGKPSKRG
Subjt:  RPDRGVWAPRSRSDASVSQLEESSVSQSSHLLSDSVDAYRGEMKEDIHGSRTGDVTTIVSGRNSSVENGSVRHVGRRGAGHVMKDDGSLNPNEGKPSKRG

Query:  VAGGHEKQVWVQKSSSGS
        VAGGHEKQVWVQKSSSGS
Subjt:  VAGGHEKQVWVQKSSSGS

SwissProt top hits

e value

%identity

Alignment

B0S733 Regulator of nonsense transcripts 3A

6.6e-16

27.1

Show/hide

Query:  TKVVIRHLPPSLSHSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSS-TKKD
        +KVVIR LPPSLS   L  H+       F++  + P   S     ++RAYI+F  PED+  F + FDG+VF++ KG +Y AVVE+AP Q+V +    KKD
Subjt:  TKVVIRHLPPSLSHSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSS-TKKD

Query:  GREGTIYKDPDYLEFL--------KLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQCFDFIGIFSSSEGQRGGAASSRKP
         + GTI +DP+Y  FL        K +A P   L   EI+ + +E      AK T   TPL+E+++ K+                  E QR       + 
Subjt:  GREGTIYKDPDYLEFL--------KLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQCFDFIGIFSSSEGQRGGAASSRKP

Query:  ESNSMKRGMEKKKYILKDSVKNTNRRDKSNFILVPRREDQSATSSGISDVGTADFGKKKILLLKGKERDISHVSDDMLLLQSVTSSGNSPASASKHNQRR
        E    +R  E +K   ++  K   R ++       R+E +        ++        KI LLK  +RD   V  D L            +  ++ N+  
Subjt:  ESNSMKRGMEKKKYILKDSVKNTNRRDKSNFILVPRREDQSATSSGISDVGTADFGKKKILLLKGKERDISHVSDDMLLLQSVTSSGNSPASASKHNQRR

Query:  EAGGSVIRSILLNNEARHGQSSSVAQSHQKIQILNSDNGKRPPRPINARSGSND--ISSNEPNPSGSEGDGKRA-------------PDNKFSKKELHGL
        + GG        +N ++        + H + Q      G+   R         D  +   E    G      RA               +K  K++   +
Subjt:  EAGGSVIRSILLNNEARHGQSSSVAQSHQKIQILNSDNGKRPPRPINARSGSND--ISSNEPNPSGSEGDGKRA-------------PDNKFSKKELHGL

Query:  GSASEKQEKRIRNKDRPDRGVWAPRSRS
        GS  E    RIRNKDRP   ++ P +R+
Subjt:  GSASEKQEKRIRNKDRPDRGVWAPRSRS

Q10267 Nonsense-mediated mRNA decay protein 3

1.6e-09

23.31

Show/hide

Query:  KVVIRHLPPSLSHSDLFHHIHDRFAGRFNWSYYRPGKTS--QKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKKD
        KV++ +LPP+L        I+  F     W  +  GK +   + +  + AY+ F     V EF   + GH F+++K   Y+A+V  AP Q++P S  K D
Subjt:  KVVIRHLPPSLSHSDLFHHIHDRFAGRFNWSYYRPGKTS--QKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKKD

Query:  GREGTIYKDPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKR--AVESG--------TQCFDFIGIFSSSEGQRGGAASSR
          EG++ +DP + EF              + +   + A      ++    TPL++++ +K+   VE G         +    + +          A  S 
Subjt:  GREGTIYKDPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKR--AVESG--------TQCFDFIGIFSSSEGQRGGAASSR

Query:  KPESNSMKRGMEKKKYILKDSVKNTNRRDKSNFILVP-RREDQSATSSGISDVGTAD---FGKKKI
        +    S K   E    ++K+   +  ++ K      P      S  S   SD  T +    GK+KI
Subjt:  KPESNSMKRGMEKKKYILKDSVKNTNRRDKSNFILVP-RREDQSATSSGISDVGTAD---FGKKKI

Q9BZI7 Regulator of nonsense transcripts 3B

7.8e-17

27.25

Show/hide

Query:  TKVVIRHLPPSLSHSDLFHHI-----HDRFAGRFNWSYYRPGKTSQKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSS
        +KVVIR LPP+L+   L  H+     HD F        +    TS     YARAYI+F   ED+  F + FDG+VF++ KG +Y A+VE+AP Q+  +  
Subjt:  TKVVIRHLPPSLSHSDLFHHI-----HDRFAGRFNWSYYRPGKTSQKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSS

Query:  TKK-DGREGTIYKDPDYLEFLKLIAKPAEHLPSA-EIQLERKEAE-QSGAAKETPIVTPLMEFVRQKRAVESGTQCFDFIGIFSSSEGQRGGAASSRKPE
        TKK D + GTI  DP+Y +FL+  A   E + S  E  LE  EA+ +   AK+T   TPL+ F++ K+ +    +  +        + QR       K E
Subjt:  TKK-DGREGTIYKDPDYLEFLKLIAKPAEHLPSA-EIQLERKEAE-QSGAAKETPIVTPLMEFVRQKRAVESGTQCFDFIGIFSSSEGQRGGAASSRKPE

Query:  SNSMKRGMEKKKYILKDSVKNTNRRDKSNFILVPRREDQSATSSGISDVGTADFGKKKILLLKGKERDISHVSDDMLLLQSVTSSGNSPASASKHNQRRE
            ++ +EK K I  D +   ++      I V R   Q+     +         K+     K K+ D  ++SD+    QS T    S +       +R 
Subjt:  SNSMKRGMEKKKYILKDSVKNTNRRDKSNFILVPRREDQSATSSGISDVGTADFGKKKILLLKGKERDISHVSDDMLLLQSVTSSGNSPASASKHNQRRE

Query:  AGGSVIRSILLNNEARHGQSSSVAQSHQKIQILNSDNGKRPPRPINARSGSNDISSNEPNPSGSEGDGKRAPDNKFSKKELHGLGSASEKQEK-----RI
           S  R               + +  ++++    +  ++  R    ++        +      E D  R    K    E  G    +EK+E+     RI
Subjt:  AGGSVIRSILLNNEARHGQSSSVAQSHQKIQILNSDNGKRPPRPINARSGSNDISSNEPNPSGSEGDGKRAPDNKFSKKELHGLGSASEKQEK-----RI

Query:  RNKDRPDRGVWAPRSRSDASVSQLEESSVSQSS
        RNKDRP   ++ P +RS   +   ++S+ S  S
Subjt:  RNKDRPDRGVWAPRSRSDASVSQLEESSVSQSS

Q9FVW4 Regulator of nonsense transcripts UPF3

8.7e-109

46.17

Show/hide

Query:  MKDPLERTKVVIRHLPPSLSHSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPR
        MK+PL++ KVV+RHLPPSLS SDL   I  RFA R+NW  +RPGK+S K+Q+Y+RAY+ F  PEDV+EFA FF+GHVFVNEKGAQ+KA+VEYAPSQRVP+
Subjt:  MKDPLERTKVVIRHLPPSLSHSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPR

Query:  SSTKKDGREGTIYKDPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQCFDFIGIFSSSEGQRGGAASSRKPES
         S KKD REG+I KDPDYLEFLK+IA+P E+LPSAEIQLER+EAEQSGA+K  PIVTPLMEF+RQKRA   G Q    I       G+R    S+ KP  
Subjt:  SSTKKDGREGTIYKDPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQCFDFIGIFSSSEGQRGGAASSRKPES

Query:  NSMKRGMEKKKYILKDSVKNTNRRDKSNFILVPRREDQSATSSGISDVG----------------TADFGKKKILLLKGKERDISHVSDDMLLLQSVTSS
           KR  EKKKY+ K+S KN  R+  ++ +   + + + + SSG    G                T D GKKKILLL+ K+RD +  +      Q + ++
Subjt:  NSMKRGMEKKKYILKDSVKNTNRRDKSNFILVPRREDQSATSSGISDVG----------------TADFGKKKILLLKGKERDISHVSDDMLLLQSVTSS

Query:  GNSPASASKHNQRREAGGSVIRSILLNNEARHGQSSSVAQSHQKIQILNSDNGKRPPRPINARSGSNDISSNEPNPSGSEGDGKRAPDNKFSKKELHGLG
         +  ++ S+ NQ+ + GG +I+ ILL N++R  QSS+  QS Q+++   ++N KRP RP N R+G                            K+ H  G
Subjt:  GNSPASASKHNQRREAGGSVIRSILLNNEARHGQSSSVAQSHQKIQILNSDNGKRPPRPINARSGSNDISSNEPNPSGSEGDGKRAPDNKFSKKELHGLG

Query:  SASEKQEKRIRNKDRPDRGVWAPRSRSDASVSQLEESSVSQSSHLLSDSVDAYRGEMKEDIHGSRTGDVTTIVSGRNSSVENGSVRHVGRRGAGHVMKDD
        + SEKQE+R RNKDRPDR +WAP  R D S    E+  +S + +          GE+K+ +   R+G+V     G   ++ENGS RH  RR  G   K++
Subjt:  SASEKQEKRIRNKDRPDRGVWAPRSRSDASVSQLEESSVSQSSHLLSDSVDAYRGEMKEDIHGSRTGDVTTIVSGRNSSVENGSVRHVGRRGAGHVMKDD

Query:  GSLNPNEGKPSKRGVAGG---HEKQVWVQKSSSGS
          +   EGK S+RG  GG   HEKQ+W+QK SSG+
Subjt:  GSLNPNEGKPSKRGVAGG---HEKQVWVQKSSSGS

Q9H1J1 Regulator of nonsense transcripts 3A

2.3e-16

33.73

Show/hide

Query:  TKVVIRHLPPSLSHSDLFHHI-----HDRFAGRFNWSYYRPGKTSQKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSS
        +KVVIR LPP L+   L   +     HD F        +     S     Y+RAYI+F  P+D+  F + FDG++F++ KG +Y AVVE+AP Q++ +  
Subjt:  TKVVIRHLPPSLSHSDLFHHI-----HDRFAGRFNWSYYRPGKTSQKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSS

Query:  -TKKDGREGTIYKDPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKR
          KKD + G+I  DP+Y +FL+      E   SA  +    E E           TPL+E+++ ++
Subjt:  -TKKDGREGTIYKDPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKR

Arabidopsis top hits

e value

%identity

Alignment

AT1G33980.1 Smg-4/UPF3 family protein

6.2e-110

46.17

Show/hide

Query:  MKDPLERTKVVIRHLPPSLSHSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPR
        MK+PL++ KVV+RHLPPSLS SDL   I  RFA R+NW  +RPGK+S K+Q+Y+RAY+ F  PEDV+EFA FF+GHVFVNEKGAQ+KA+VEYAPSQRVP+
Subjt:  MKDPLERTKVVIRHLPPSLSHSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPR

Query:  SSTKKDGREGTIYKDPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQCFDFIGIFSSSEGQRGGAASSRKPES
         S KKD REG+I KDPDYLEFLK+IA+P E+LPSAEIQLER+EAEQSGA+K  PIVTPLMEF+RQKRA   G Q    I       G+R    S+ KP  
Subjt:  SSTKKDGREGTIYKDPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQCFDFIGIFSSSEGQRGGAASSRKPES

Query:  NSMKRGMEKKKYILKDSVKNTNRRDKSNFILVPRREDQSATSSGISDVG----------------TADFGKKKILLLKGKERDISHVSDDMLLLQSVTSS
           KR  EKKKY+ K+S KN  R+  ++ +   + + + + SSG    G                T D GKKKILLL+ K+RD +  +      Q + ++
Subjt:  NSMKRGMEKKKYILKDSVKNTNRRDKSNFILVPRREDQSATSSGISDVG----------------TADFGKKKILLLKGKERDISHVSDDMLLLQSVTSS

Query:  GNSPASASKHNQRREAGGSVIRSILLNNEARHGQSSSVAQSHQKIQILNSDNGKRPPRPINARSGSNDISSNEPNPSGSEGDGKRAPDNKFSKKELHGLG
         +  ++ S+ NQ+ + GG +I+ ILL N++R  QSS+  QS Q+++   ++N KRP RP N R+G                            K+ H  G
Subjt:  GNSPASASKHNQRREAGGSVIRSILLNNEARHGQSSSVAQSHQKIQILNSDNGKRPPRPINARSGSNDISSNEPNPSGSEGDGKRAPDNKFSKKELHGLG

Query:  SASEKQEKRIRNKDRPDRGVWAPRSRSDASVSQLEESSVSQSSHLLSDSVDAYRGEMKEDIHGSRTGDVTTIVSGRNSSVENGSVRHVGRRGAGHVMKDD
        + SEKQE+R RNKDRPDR +WAP  R D S    E+  +S + +          GE+K+ +   R+G+V     G   ++ENGS RH  RR  G   K++
Subjt:  SASEKQEKRIRNKDRPDRGVWAPRSRSDASVSQLEESSVSQSSHLLSDSVDAYRGEMKEDIHGSRTGDVTTIVSGRNSSVENGSVRHVGRRGAGHVMKDD

Query:  GSLNPNEGKPSKRGVAGG---HEKQVWVQKSSSGS
          +   EGK S+RG  GG   HEKQ+W+QK SSG+
Subjt:  GSLNPNEGKPSKRGVAGG---HEKQVWVQKSSSGS

AT1G33980.2 Smg-4/UPF3 family protein

5.8e-108

45.81

Show/hide

Query:  MKDPLERTKVVIRHLPPSLSHSDLFHHIHDRFAGRFNWSYYRPGKT--SQKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRV
        MK+PL++ KVV+RHLPPSLS SDL   I  RFA R+NW  +RPGK+    K+Q+Y+RAY+ F  PEDV+EFA FF+GHVFVNEKGAQ+KA+VEYAPSQRV
Subjt:  MKDPLERTKVVIRHLPPSLSHSDLFHHIHDRFAGRFNWSYYRPGKT--SQKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRV

Query:  PRSSTKKDGREGTIYKDPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQCFDFIGIFSSSEGQRGGAASSRKP
        P+ S KKD REG+I KDPDYLEFLK+IA+P E+LPSAEIQLER+EAEQSGA+K  PIVTPLMEF+RQKRA   G Q    I       G+R    S+ KP
Subjt:  PRSSTKKDGREGTIYKDPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQCFDFIGIFSSSEGQRGGAASSRKP

Query:  ESNSMKRGMEKKKYILKDSVKNTNRRDKSNFILVPRREDQSATSSGISDVG----------------TADFGKKKILLLKGKERDISHVSDDMLLLQSVT
             KR  EKKKY+ K+S KN  R+  ++ +   + + + + SSG    G                T D GKKKILLL+ K+RD +  +      Q + 
Subjt:  ESNSMKRGMEKKKYILKDSVKNTNRRDKSNFILVPRREDQSATSSGISDVG----------------TADFGKKKILLLKGKERDISHVSDDMLLLQSVT

Query:  SSGNSPASASKHNQRREAGGSVIRSILLNNEARHGQSSSVAQSHQKIQILNSDNGKRPPRPINARSGSNDISSNEPNPSGSEGDGKRAPDNKFSKKELHG
        ++ +  ++ S+ NQ+ + GG +I+ ILL N++R  QSS+  QS Q+++   ++N KRP RP N R+G                            K+ H 
Subjt:  SSGNSPASASKHNQRREAGGSVIRSILLNNEARHGQSSSVAQSHQKIQILNSDNGKRPPRPINARSGSNDISSNEPNPSGSEGDGKRAPDNKFSKKELHG

Query:  LGSASEKQEKRIRNKDRPDRGVWAPRSRSDASVSQLEESSVSQSSHLLSDSVDAYRGEMKEDIHGSRTGDVTTIVSGRNSSVENGSVRHVGRRGAGHVMK
         G+ SEKQE+R RNKDRPDR +WAP  R D S    E+  +S + +          GE+K+ +   R+G+V     G   ++ENGS RH  RR  G   K
Subjt:  LGSASEKQEKRIRNKDRPDRGVWAPRSRSDASVSQLEESSVSQSSHLLSDSVDAYRGEMKEDIHGSRTGDVTTIVSGRNSSVENGSVRHVGRRGAGHVMK

Query:  DDGSLNPNEGKPSKRGVAGG---HEKQVWVQKSSSGS
        ++  +   EGK S+RG  GG   HEKQ+W+QK SSG+
Subjt:  DDGSLNPNEGKPSKRGVAGG---HEKQVWVQKSSSGS

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

mRNA sequence

Show/hide mRNA sequence

ATGAAGGACCCGTTGGAGAGGACCAAAGTAGTGATTAGGCACTTGCCCCCTTCTCTTTCTCACTCAGATCTCTTCCACCATATTCATGATCGATTCGCTGGTCGCTTCAA
TTGGTCTTACTATCGTCCCGGAAAGACCAGTCAGAAGGACCAGAGGTACGCTCGAGCCTACATAGACTTTACCAGACCTGAAGATGTTTTTGAGTTTGCCGAGTTCTTTG
ATGGCCATGTATTTGTTAATGAGAAGGGTGCTCAGTATAAGGCTGTAGTTGAATATGCACCTTCACAGCGTGTTCCGAGATCATCTACCAAGAAGGATGGTCGTGAGGGG
ACAATATACAAAGATCCAGATTATTTGGAGTTTCTCAAACTTATTGCAAAGCCTGCCGAGCATCTTCCTAGTGCTGAAATACAATTGGAAAGGAAAGAAGCAGAGCAATC
TGGTGCTGCAAAAGAAACTCCAATTGTTACCCCTCTCATGGAGTTTGTTCGCCAGAAACGAGCAGTTGAAAGCGGAACACAGTGTTTTGATTTCATAGGGATCTTCAGTT
CCTCGGAAGGTCAAAGGGGTGGGGCAGCATCATCTAGAAAGCCTGAGTCGAATTCCATGAAGCGAGGGATGGAGAAAAAGAAGTATATTTTAAAGGACAGTGTGAAGAAC
ACAAACCGCAGAGACAAGTCAAATTTCATTTTAGTGCCCAGGCGAGAGGATCAGTCCGCTACTTCAAGTGGAATTTCGGATGTTGGTACAGCTGACTTTGGAAAGAAAAA
AATTCTGCTTCTCAAGGGGAAAGAGCGAGATATATCTCATGTTTCTGATGACATGTTACTGTTGCAGAGTGTTACATCTTCTGGGAATTCTCCTGCAAGTGCATCAAAAC
ATAATCAGAGGCGTGAGGCTGGTGGAAGTGTGATCAGAAGCATCCTTTTAAATAATGAAGCACGTCATGGACAGAGTTCATCAGTAGCTCAGTCTCATCAAAAGATTCAG
ATCCTGAACTCAGACAATGGGAAGCGGCCACCTCGTCCCATTAATGCTCGATCTGGGTCTAATGATATCTCCAGTAATGAACCAAATCCATCTGGTTCAGAAGGGGATGG
AAAAAGGGCTCCAGACAATAAGTTTAGTAAAAAGGAACTTCATGGCCTGGGTAGTGCTAGTGAGAAGCAAGAGAAACGAATAAGAAACAAAGATAGACCTGATCGTGGAG
TTTGGGCACCACGCAGTCGTTCAGATGCCTCAGTCTCACAACTTGAGGAATCCTCTGTTTCACAATCTAGTCATTTGCTTTCTGACTCAGTTGACGCATACCGCGGGGAA
ATGAAAGAAGATATTCATGGAAGCAGGACTGGGGATGTTACAACCATTGTGAGTGGGCGTAACAGTTCAGTGGAAAATGGTTCTGTTAGACATGTTGGACGTCGCGGGGC
TGGCCATGTTATGAAGGATGATGGGTCTTTGAACCCAAATGAAGGGAAGCCATCCAAAAGAGGTGTTGCTGGTGGTCATGAGAAACAAGTATGGGTTCAGAAGTCATCTT
CAGGTTCTTAGCATAATTAAATCATGTGAGTTCTTTTACAAATTGGCAATGTTTTTATCTCCTTAAGAGTGACTATCTTTTATGAGGTTTTTCTCTCTAGGGACATCCAA
CTGAATGACTAAGAAGGTCAAAATTAACTAAAGATTCTAGTTTGAAGTACATATAGCAAATGTTAAAATCCATTGTGCTAACATTTGTCAGATATATATAATTTGGCATG
CAACTTACGATAGTTTCATGCCTCTTAGCACTTTTAGTATTCTTAGCACTCGATAATTTGGCATGTAAATTAGCTTGTTTATGGTAATTTCTTCGTGTATGTTTTAATTG
TTATGAACTTCGTTATTTTATTATTATTTTTATATGAAATAGGAAACAAAATATTTGGTAGATGTGAATTTGTGATGAAATTTTTATGTGAGTGGGAAACGAAAATTACA
GGAAGGTCTTCCAATTAACCAAAAGTTAGCGTACTGTAATTTGTTAAAGGACGTGAGTGTGCATATACATTAGAACATAACATGGTTGGACAAATTTATCAGAAGGGGGA
AGCTTATTATTGTATGTCTTGCTATGAAGGATATTACTTATTACTACTATATTATTATTCTTTGGCTGAAAGATGTACTAATCTACTGATAACATTTAATGTGATTCCTC
ACATTGGCTAGATAATGTTATTTGTTTTGTCTTTAGGTCTTTTTGTTTATTATATCGGTAAGGACATGTATTGTTTTCCATTGTACCATGATCGTAATGATGTCTATGTT
ATCCAACAGATAGTGGCATCCAGACAGGACTA

Protein sequence

Show/hide protein sequence

MKDPLERTKVVIRHLPPSLSHSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKKDGREG
TIYKDPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQCFDFIGIFSSSEGQRGGAASSRKPESNSMKRGMEKKKYILKDSVKN
TNRRDKSNFILVPRREDQSATSSGISDVGTADFGKKKILLLKGKERDISHVSDDMLLLQSVTSSGNSPASASKHNQRREAGGSVIRSILLNNEARHGQSSSVAQSHQKIQ
ILNSDNGKRPPRPINARSGSNDISSNEPNPSGSEGDGKRAPDNKFSKKELHGLGSASEKQEKRIRNKDRPDRGVWAPRSRSDASVSQLEESSVSQSSHLLSDSVDAYRGE
MKEDIHGSRTGDVTTIVSGRNSSVENGSVRHVGRRGAGHVMKDDGSLNPNEGKPSKRGVAGGHEKQVWVQKSSSGS

PI0004880 (gene) of Melon (PI 482460) v1 genome