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PI0004896 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0004896
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionNon-LTR retroelement reverse transcriptase-like protein
Genome locationchr07:9238472..9238744
RNA-Seq ExpressionPI0004896
SyntenyPI0004896
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0062888.1 non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa]2.8e-0440.96Show/hide
Query:  KSGPSTV--LCFVLVLSLSNLGIQGPRTFVYIFGMVPRTFTQGRGREGSSL-GEYYVTNQNDKKLRMLPKLSNSLASVKNHRK
        KS   TV  LCFVLV++LS    + PRT  +  GM+P  F++G G+E SSL GE +   +  K+  MLP      + ++NH K
Subjt:  KSGPSTV--LCFVLVLSLSNLGIQGPRTFVYIFGMVPRTFTQGRGREGSSL-GEYYVTNQNDKKLRMLPKLSNSLASVKNHRK

TrEMBL top hitse value%identityAlignment
A0A5A7V129 Ribosomal protein L5 (Mitochondrion)6.8e-0443.18Show/hide
Query:  MPKPSL-HFEVKSGPSTV--LCFVLVLSLSNLGIQGPRTFVYIFGMVPRTFTQGRGREGSSL-GEYYVTNQNDKKLRMLPKLSNSLAS
        MP+    H  VKSG  TV  LC V V+SLS  G +   T V+  GM+  TF+QG GRE SSL G+ +   +  K+  MLP    + AS
Subjt:  MPKPSL-HFEVKSGPSTV--LCFVLVLSLSNLGIQGPRTFVYIFGMVPRTFTQGRGREGSSL-GEYYVTNQNDKKLRMLPKLSNSLAS

A0A5A7V5J2 Non-LTR retroelement reverse transcriptase-like protein1.4e-0440.96Show/hide
Query:  KSGPSTV--LCFVLVLSLSNLGIQGPRTFVYIFGMVPRTFTQGRGREGSSL-GEYYVTNQNDKKLRMLPKLSNSLASVKNHRK
        KS   TV  LCFVLV++LS    + PRT  +  GM+P  F++G G+E SSL GE +   +  K+  MLP      + ++NH K
Subjt:  KSGPSTV--LCFVLVLSLSNLGIQGPRTFVYIFGMVPRTFTQGRGREGSSL-GEYYVTNQNDKKLRMLPKLSNSLASVKNHRK

A0A5D3CUK8 Gag/pol protein8.9e-0445.83Show/hide
Query:  HFEVKSGPSTV--LCFVLVLSLSNLGIQGPRTFVYIFGMVPRTFTQGRGREGSSL-GEYYVTNQNDKKLRML
        H  VK+ P+TV   C VLV+  SN G   PRT VYI G+VP  F Q   R+ SSL GE     +  K+  ML
Subjt:  HFEVKSGPSTV--LCFVLVLSLSNLGIQGPRTFVYIFGMVPRTFTQGRGREGSSL-GEYYVTNQNDKKLRML

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCCAAACCCAGTTTACATTTTGAGGTCAAAAGTGGACCTTCAACGGTCCTATGTTTTGTGTTGGTGCTAAGCCTTTCTAATTTGGGGATTCAAGGACCAAGGACTTT
CGTCTACATTTTTGGTATGGTCCCTCGCACATTTACCCAAGGAAGAGGTCGGGAAGGGAGCTCGTTGGGGGAGTACTATGTTACCAACCAAAACGACAAAAAATTGCGAA
TGCTTCCTAAACTTAGCAATAGTTTGGCCAGTGTCAAGAACCATCGAAAATGA
mRNA sequenceShow/hide mRNA sequence
ATGCCCAAACCCAGTTTACATTTTGAGGTCAAAAGTGGACCTTCAACGGTCCTATGTTTTGTGTTGGTGCTAAGCCTTTCTAATTTGGGGATTCAAGGACCAAGGACTTT
CGTCTACATTTTTGGTATGGTCCCTCGCACATTTACCCAAGGAAGAGGTCGGGAAGGGAGCTCGTTGGGGGAGTACTATGTTACCAACCAAAACGACAAAAAATTGCGAA
TGCTTCCTAAACTTAGCAATAGTTTGGCCAGTGTCAAGAACCATCGAAAATGA
Protein sequenceShow/hide protein sequence
MPKPSLHFEVKSGPSTVLCFVLVLSLSNLGIQGPRTFVYIFGMVPRTFTQGRGREGSSLGEYYVTNQNDKKLRMLPKLSNSLASVKNHRK