CuGenDBv2

Gene ID	PI0004927
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	SKP1-like protein
Genome location	chr10:219025..221806
RNA-Seq Expression	PI0004927
Synteny	PI0004927
Gene Ontology terms	GO:0016567 - protein ubiquitination (biological process) GO:0031146 - SCF-dependent proteasomal ubiquitin-dependent protein catabolic process (biological process) GO:0055085 - transmembrane transport (biological process) GO:0071705 - nitrogen compound transport (biological process) GO:0005634 - nucleus (cellular component) GO:0005737 - cytoplasm (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0022857 - transmembrane transporter activity (molecular function) GO:0097602 - cullin family protein binding (molecular function)
InterPro domains	IPR001232 - S-phase kinase-associated protein 1-like IPR009003 - Peptidase S1, PA clan IPR009834 - Ureide permease IPR011333 - SKP1/BTB/POZ domain superfamily IPR016073 - SKP1 component, POZ domain IPR030189 - Ureide permease, plant

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6585523.1 SKP1-like protein 1B, partial [Cucurbita argyrosperma subsp. sororia]

2.7e-45

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Query:  MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDECADSGIPLPNVNSKILPKVIEYCKKHVESPKPEDRTGSVDDDLKTWDSEFVKVDQATLFDLIL
        MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIED+CADSGIPLPNVNSKIL KVIEYCKKHVESPKPEDR GSV+DDLKTWDSEFVKVDQATLFDLIL
Subjt:  MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDECADSGIPLPNVNSKILPKVIEYCKKHVESPKPEDRTGSVDDDLKTWDSEFVKVDQATLFDLIL

KAG6598516.1 SKP1-like protein 1B, partial [Cucurbita argyrosperma subsp. sororia]

5.5e-46

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Query:  MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDECADSGIPLPNVNSKILPKVIEYCKKHVESPKPEDRTGSVDDDLKTWDSEFVKVDQATLFDLIL
        MS+GRKITLKSSDGEIFEVDEAVALESQTIKHMIED+CADSGIPLPNVNSKIL KVIEYCKKHVESPKPEDRTGSVDDDLKTWDSEFVKVDQATLFDLIL
Subjt:  MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDECADSGIPLPNVNSKILPKVIEYCKKHVESPKPEDRTGSVDDDLKTWDSEFVKVDQATLFDLIL

KAG7029453.1 SKP1-like protein 1B [Cucurbita argyrosperma subsp. argyrosperma]

5.5e-46

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Query:  MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDECADSGIPLPNVNSKILPKVIEYCKKHVESPKPEDRTGSVDDDLKTWDSEFVKVDQATLFDLIL
        MS+GRKITLKSSDGEIFEVDEAVALESQTIKHMIED+CADSGIPLPNVNSKIL KVIEYCKKHVESPKPEDRTGSVDDDLKTWDSEFVKVDQATLFDLIL
Subjt:  MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDECADSGIPLPNVNSKILPKVIEYCKKHVESPKPEDRTGSVDDDLKTWDSEFVKVDQATLFDLIL

XP_004143010.1 SKP1-like protein 1B [Cucumis sativus]

2.5e-46

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Query:  MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDECADSGIPLPNVNSKILPKVIEYCKKHVESPKPEDRTGSVDDDLKTWDSEFVKVDQATLFDLIL
        MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIED+CADSGIPLPNVNSKIL KVIEYCKKHVESPKPEDRTGSVDDDLKTWDSEFVKVDQATLFDLIL
Subjt:  MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDECADSGIPLPNVNSKILPKVIEYCKKHVESPKPEDRTGSVDDDLKTWDSEFVKVDQATLFDLIL

XP_008445323.1 PREDICTED: SKP1-like protein 1B [Cucumis melo]

1.2e-45

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Query:  MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDECADSGIPLPNVNSKILPKVIEYCKKHVESPKPEDRTGSVDDDLKTWDSEFVKVDQATLFDLIL
        MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIED+CADSGIPLPNV SKIL KVIEYCKKHVESPKPEDRTGSVDDDLKTWDSEFVKVDQATLFDLIL
Subjt:  MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDECADSGIPLPNVNSKILPKVIEYCKKHVESPKPEDRTGSVDDDLKTWDSEFVKVDQATLFDLIL

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LMK0 SKP1-like protein

1.2e-46

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Query:  MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDECADSGIPLPNVNSKILPKVIEYCKKHVESPKPEDRTGSVDDDLKTWDSEFVKVDQATLFDLIL
        MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIED+CADSGIPLPNVNSKIL KVIEYCKKHVESPKPEDRTGSVDDDLKTWDSEFVKVDQATLFDLIL
Subjt:  MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDECADSGIPLPNVNSKILPKVIEYCKKHVESPKPEDRTGSVDDDLKTWDSEFVKVDQATLFDLIL

A0A1S3BCE2 SKP1-like protein

6.0e-46

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Query:  MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDECADSGIPLPNVNSKILPKVIEYCKKHVESPKPEDRTGSVDDDLKTWDSEFVKVDQATLFDLIL
        MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIED+CADSGIPLPNV SKIL KVIEYCKKHVESPKPEDRTGSVDDDLKTWDSEFVKVDQATLFDLIL
Subjt:  MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDECADSGIPLPNVNSKILPKVIEYCKKHVESPKPEDRTGSVDDDLKTWDSEFVKVDQATLFDLIL

A0A5A7VEU3 SKP1-like protein

6.0e-46

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Query:  MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDECADSGIPLPNVNSKILPKVIEYCKKHVESPKPEDRTGSVDDDLKTWDSEFVKVDQATLFDLIL
        MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIED+CADSGIPLPNV SKIL KVIEYCKKHVESPKPEDRTGSVDDDLKTWDSEFVKVDQATLFDLIL
Subjt:  MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDECADSGIPLPNVNSKILPKVIEYCKKHVESPKPEDRTGSVDDDLKTWDSEFVKVDQATLFDLIL

A0A6J1HGN0 SKP1-like protein

1.2e-46

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Query:  MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDECADSGIPLPNVNSKILPKVIEYCKKHVESPKPEDRTGSVDDDLKTWDSEFVKVDQATLFDLIL
        MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIED+CADSGIPLPNVNSKIL KVIEYCKKHVESPKPEDRTGSVDDDLKTWDSEFVKVDQATLFDLIL
Subjt:  MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDECADSGIPLPNVNSKILPKVIEYCKKHVESPKPEDRTGSVDDDLKTWDSEFVKVDQATLFDLIL

A0A6J1K9X2 SKP1-like protein

1.2e-46

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Query:  MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDECADSGIPLPNVNSKILPKVIEYCKKHVESPKPEDRTGSVDDDLKTWDSEFVKVDQATLFDLIL
        MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIED+CADSGIPLPNVNSKIL KVIEYCKKHVESPKPEDRTGSVDDDLKTWDSEFVKVDQATLFDLIL
Subjt:  MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDECADSGIPLPNVNSKILPKVIEYCKKHVESPKPEDRTGSVDDDLKTWDSEFVKVDQATLFDLIL

SwissProt top hits

e value

%identity

Alignment

Q41706 Probable ureide permease A3 (Fragment)

7.3e-33

75.86

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Query:  SKAFNLATNDQWHTLNDGVSHLSVYTAFFYFSVSCFVIAIVLNVVFLYRPILNSPKTTLKAYVNDWNGRGWALLAGLLCGFGNGLQF
        S AFNLATNDQWHTL +G+ HL+VYTAFFYFS+SCFVIAI+LN+ FLY P+LN PK++LKAY+ D +GR WALLAGLLCGFGN LQF
Subjt:  SKAFNLATNDQWHTLNDGVSHLSVYTAFFYFSVSCFVIAIVLNVVFLYRPILNSPKTTLKAYVNDWNGRGWALLAGLLCGFGNGLQF

Q93Z75 Ureide permease 5

1.2e-32

72.41

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Query:  SKAFNLATNDQWHTLNDGVSHLSVYTAFFYFSVSCFVIAIVLNVVFLYRPILNSPKTTLKAYVNDWNGRGWALLAGLLCGFGNGLQF
        S  FNLATNDQWHTL  GV  L VYTAFFYFS+SCFVIA+ LN+ FLY+P+L+SP+++ + Y++DWNGRGWAL AGLLCGFGNGLQF
Subjt:  SKAFNLATNDQWHTLNDGVSHLSVYTAFFYFSVSCFVIAIVLNVVFLYRPILNSPKTTLKAYVNDWNGRGWALLAGLLCGFGNGLQF

Q9FHW7 SKP1-like protein 1B

5.4e-36

69.3

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Query:  MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDECADSGIPLPNVNSKILPKVIEYCKKHVESPKPEDRT--------------GSVDDDLKTWDSE
        MS+ RKITLKSSDGE FE+DEAVALESQTIKHMIED+C D+GIPLPNV SKIL KVIEYCK+HVE+ +  + T              GS D+DLKTWDSE
Subjt:  MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDECADSGIPLPNVNSKILPKVIEYCKKHVESPKPEDRT--------------GSVDDDLKTWDSE

Query:  FVKVDQATLFDLIL
        F+KVDQ TLFDLIL
Subjt:  FVKVDQATLFDLIL

Q9ZPR7 Ureide permease 1

3.6e-32

72.41

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Query:  SKAFNLATNDQWHTLNDGVSHLSVYTAFFYFSVSCFVIAIVLNVVFLYRPILNSPKTTLKAYVNDWNGRGWALLAGLLCGFGNGLQF
        S AFNLATNDQWHTL  GV  L+VYTAFFYFS+S FV+A++LN+ FLY PIL  P+++ KAY+NDWNGRGW+ LAG LCGFGNGLQF
Subjt:  SKAFNLATNDQWHTLNDGVSHLSVYTAFFYFSVSCFVIAIVLNVVFLYRPILNSPKTTLKAYVNDWNGRGWALLAGLLCGFGNGLQF

Q9ZQ89 Ureide permease 2

3.6e-32

74.71

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Query:  SKAFNLATNDQWHTLNDGVSHLSVYTAFFYFSVSCFVIAIVLNVVFLYRPILNSPKTTLKAYVNDWNGRGWALLAGLLCGFGNGLQF
        S AFNLATNDQW+ L  GV  L VYTAFFYFSVSCF+IA++LNVVFLY P+L  PK++ KAY+NDWNGR WA LAG LCGFGNGLQF
Subjt:  SKAFNLATNDQWHTLNDGVSHLSVYTAFFYFSVSCFVIAIVLNVVFLYRPILNSPKTTLKAYVNDWNGRGWALLAGLLCGFGNGLQF

Arabidopsis top hits

e value

%identity

Alignment

AT1G26440.1 ureide permease 5

8.8e-34

72.41

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Query:  SKAFNLATNDQWHTLNDGVSHLSVYTAFFYFSVSCFVIAIVLNVVFLYRPILNSPKTTLKAYVNDWNGRGWALLAGLLCGFGNGLQF
        S  FNLATNDQWHTL  GV  L VYTAFFYFS+SCFVIA+ LN+ FLY+P+L+SP+++ + Y++DWNGRGWAL AGLLCGFGNGLQF
Subjt:  SKAFNLATNDQWHTLNDGVSHLSVYTAFFYFSVSCFVIAIVLNVVFLYRPILNSPKTTLKAYVNDWNGRGWALLAGLLCGFGNGLQF

AT1G26440.2 ureide permease 5

8.8e-34

72.41

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Query:  SKAFNLATNDQWHTLNDGVSHLSVYTAFFYFSVSCFVIAIVLNVVFLYRPILNSPKTTLKAYVNDWNGRGWALLAGLLCGFGNGLQF
        S  FNLATNDQWHTL  GV  L VYTAFFYFS+SCFVIA+ LN+ FLY+P+L+SP+++ + Y++DWNGRGWAL AGLLCGFGNGLQF
Subjt:  SKAFNLATNDQWHTLNDGVSHLSVYTAFFYFSVSCFVIAIVLNVVFLYRPILNSPKTTLKAYVNDWNGRGWALLAGLLCGFGNGLQF

AT1G26440.3 ureide permease 5

8.8e-34

72.41

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Query:  SKAFNLATNDQWHTLNDGVSHLSVYTAFFYFSVSCFVIAIVLNVVFLYRPILNSPKTTLKAYVNDWNGRGWALLAGLLCGFGNGLQF
        S  FNLATNDQWHTL  GV  L VYTAFFYFS+SCFVIA+ LN+ FLY+P+L+SP+++ + Y++DWNGRGWAL AGLLCGFGNGLQF
Subjt:  SKAFNLATNDQWHTLNDGVSHLSVYTAFFYFSVSCFVIAIVLNVVFLYRPILNSPKTTLKAYVNDWNGRGWALLAGLLCGFGNGLQF

AT1G26440.4 ureide permease 5

8.8e-34

72.41

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Query:  SKAFNLATNDQWHTLNDGVSHLSVYTAFFYFSVSCFVIAIVLNVVFLYRPILNSPKTTLKAYVNDWNGRGWALLAGLLCGFGNGLQF
        S  FNLATNDQWHTL  GV  L VYTAFFYFS+SCFVIA+ LN+ FLY+P+L+SP+++ + Y++DWNGRGWAL AGLLCGFGNGLQF
Subjt:  SKAFNLATNDQWHTLNDGVSHLSVYTAFFYFSVSCFVIAIVLNVVFLYRPILNSPKTTLKAYVNDWNGRGWALLAGLLCGFGNGLQF

AT5G42190.1 E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein

3.8e-37

69.3

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Query:  MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDECADSGIPLPNVNSKILPKVIEYCKKHVESPKPEDRT--------------GSVDDDLKTWDSE
        MS+ RKITLKSSDGE FE+DEAVALESQTIKHMIED+C D+GIPLPNV SKIL KVIEYCK+HVE+ +  + T              GS D+DLKTWDSE
Subjt:  MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDECADSGIPLPNVNSKILPKVIEYCKKHVESPKPEDRT--------------GSVDDDLKTWDSE

Query:  FVKVDQATLFDLIL
        F+KVDQ TLFDLIL
Subjt:  FVKVDQATLFDLIL

Sequences

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CDS sequence

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ATGTCTTCTGGCCGGAAAATCACCTTGAAGAGCTCCGACGGCGAGATCTTCGAGGTCGACGAAGCGGTCGCCTTGGAGTCACAAACGATCAAGCACATGATCGAAGACGA
GTGCGCCGATAGTGGAATCCCCCTTCCTAATGTCAACAGCAAGATCTTGCCCAAGGTTATCGAGTACTGCAAGAAGCACGTCGAGTCCCCTAAGCCCGAGGATCGTACTG
GCTCCGTCGACGACGACCTCAAGACTTGGGACAGCGAATTCGTCAAAGTCGACCAGGCCACCTTATTTGATCTCATTCTGATTCTTACAAATGCCCATGTCGTCGCTGAT
CACAACTTCGTCCTGGTAAGGAAGCATGGTTCACCAACAAAGTATAGGGCAGAAGTTCAAGCTGTTGGTCACGAATGTGACCTGGCTATTCTGGTCGTTGATAAAATACC
ACCAGAGTATCTCTCATATTCAGAGAAACATGACAATCGAAAACAACGTGGAGATCCATCGACATTAGGAGAGGAAGCCAAAGGAGCCTCAAGCAAGGCATTCAATTTGG
CAACAAACGATCAATGGCACACTTTAAACGACGGTGTTTCGCACTTGTCAGTCTACACTGCATTTTTCTACTTCTCGGTTTCTTGTTTCGTCATAGCCATTGTTCTCAAC
GTTGTCTTCCTTTACCGCCCCATACTTAACTCACCAAAAACAACATTGAAGGCATATGTGAATGATTGGAATGGTAGAGGATGGGCCTTGTTGGCTGGACTCTTGTGTGG
CTTTGGCAATGGTTTGCAGTTTGGGTGGCCAAGCTGCTGGTTATACTGCAGCAGATGCTGTGCAGGAAAGATTGCCCCGTATTGA

mRNA sequence

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Protein sequence

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MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDECADSGIPLPNVNSKILPKVIEYCKKHVESPKPEDRTGSVDDDLKTWDSEFVKVDQATLFDLILILTNAHVVAD
HNFVLVRKHGSPTKYRAEVQAVGHECDLAILVVDKIPPEYLSYSEKHDNRKQRGDPSTLGEEAKGASSKAFNLATNDQWHTLNDGVSHLSVYTAFFYFSVSCFVIAIVLN
VVFLYRPILNSPKTTLKAYVNDWNGRGWALLAGLLCGFGNGLQFGWPSCWLYCSRCCAGKIAPY

PI0004927 (gene) of Melon (PI 482460) v1 genome