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PI0004935 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0004935
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionPhycobilisome rod-core linker polypeptide CpcG2 like
Genome locationchr08:23005074..23007908
RNA-Seq ExpressionPI0004935
SyntenyPI0004935
Gene Ontology termsGO:0045944 - positive regulation of transcription by RNA polymerase II (biological process)
GO:0005634 - nucleus (cellular component)
GO:0000977 - RNA polymerase II regulatory region sequence-specific DNA binding (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004137707.1 uncharacterized protein LOC101209674 [Cucumis sativus]1.0e-28100Show/hide
Query:  MAGGNFVHRVFSYLVNEVLVNSLANSRSFQRFAVRTSKQIEDISNKAAQKKQELAEQVKDFSKNFDSFKNH
        MAGGNFVHRVFSYLVNEVLVNSLANSRSFQRFAVRTSKQIEDISNKAAQKKQELAEQVKDFSKNFDSFKNH
Subjt:  MAGGNFVHRVFSYLVNEVLVNSLANSRSFQRFAVRTSKQIEDISNKAAQKKQELAEQVKDFSKNFDSFKNH
XP_008442394.1 PREDICTED: uncharacterized protein LOC103486274 [Cucumis melo]1.4e-2795.77Show/hide
Query:  MAGGNFVHRVFSYLVNEVLVNSLANSRSFQRFAVRTSKQIEDISNKAAQKKQELAEQVKDFSKNFDSFKNH
        MAGGNF+HRVFSYLVNEVLVNSLANSRSFQRFAV+TSKQIEDIS KAAQKKQELAEQVKDFSKNFDSFKNH
Subjt:  MAGGNFVHRVFSYLVNEVLVNSLANSRSFQRFAVRTSKQIEDISNKAAQKKQELAEQVKDFSKNFDSFKNH
XP_022935686.1 uncharacterized protein LOC111442470 [Cucurbita moschata]1.3e-2594.29Show/hide
Query:  MAGGNFVHRVFSYLVNEVLVNSLANSRSFQRFAVRTSKQIEDISNKAAQKKQELAEQVKDFSKNFDSFKN
        MAGGNF+HRV SYLVNEVLVNSLANSR+FQRFAVRTSKQIEDISNKAAQKKQELAEQVKD SKNFDSFKN
Subjt:  MAGGNFVHRVFSYLVNEVLVNSLANSRSFQRFAVRTSKQIEDISNKAAQKKQELAEQVKDFSKNFDSFKN
XP_022983627.1 uncharacterized protein LOC111482182 [Cucurbita maxima]3.9e-2592.86Show/hide
Query:  MAGGNFVHRVFSYLVNEVLVNSLANSRSFQRFAVRTSKQIEDISNKAAQKKQELAEQVKDFSKNFDSFKN
        MAGGNF+HRV SYLVNEVLVNSLANSR+FQRFAVRTSKQIEDISNKAA+KKQELAEQVKD SKNFDSFKN
Subjt:  MAGGNFVHRVFSYLVNEVLVNSLANSRSFQRFAVRTSKQIEDISNKAAQKKQELAEQVKDFSKNFDSFKN
XP_038903248.1 uncharacterized protein LOC120089892 [Benincasa hispida]3.9e-2592.86Show/hide
Query:  MAGGNFVHRVFSYLVNEVLVNSLANSRSFQRFAVRTSKQIEDISNKAAQKKQELAEQVKDFSKNFDSFKN
        MAGGNF+HRV SYLVNEVLVNSLANSR+FQRFAVRTSKQIE+ISNKAAQKKQELAEQVKD SKNFDSFKN
Subjt:  MAGGNFVHRVFSYLVNEVLVNSLANSRSFQRFAVRTSKQIEDISNKAAQKKQELAEQVKDFSKNFDSFKN
TrEMBL top hitse value%identityAlignment
A0A0A0L9U5 Uncharacterized protein4.8e-29100Show/hide
Query:  MAGGNFVHRVFSYLVNEVLVNSLANSRSFQRFAVRTSKQIEDISNKAAQKKQELAEQVKDFSKNFDSFKNH
        MAGGNFVHRVFSYLVNEVLVNSLANSRSFQRFAVRTSKQIEDISNKAAQKKQELAEQVKDFSKNFDSFKNH
Subjt:  MAGGNFVHRVFSYLVNEVLVNSLANSRSFQRFAVRTSKQIEDISNKAAQKKQELAEQVKDFSKNFDSFKNH
A0A1S3B691 uncharacterized protein LOC1034862747.0e-2895.77Show/hide
Query:  MAGGNFVHRVFSYLVNEVLVNSLANSRSFQRFAVRTSKQIEDISNKAAQKKQELAEQVKDFSKNFDSFKNH
        MAGGNF+HRVFSYLVNEVLVNSLANSRSFQRFAV+TSKQIEDIS KAAQKKQELAEQVKDFSKNFDSFKNH
Subjt:  MAGGNFVHRVFSYLVNEVLVNSLANSRSFQRFAVRTSKQIEDISNKAAQKKQELAEQVKDFSKNFDSFKNH
A0A6J1F5E7 uncharacterized protein LOC1114424706.5e-2694.29Show/hide
Query:  MAGGNFVHRVFSYLVNEVLVNSLANSRSFQRFAVRTSKQIEDISNKAAQKKQELAEQVKDFSKNFDSFKN
        MAGGNF+HRV SYLVNEVLVNSLANSR+FQRFAVRTSKQIEDISNKAAQKKQELAEQVKD SKNFDSFKN
Subjt:  MAGGNFVHRVFSYLVNEVLVNSLANSRSFQRFAVRTSKQIEDISNKAAQKKQELAEQVKDFSKNFDSFKN
A0A6J1I5H8 uncharacterized protein LOC1114701029.4e-2591.43Show/hide
Query:  MAGGNFVHRVFSYLVNEVLVNSLANSRSFQRFAVRTSKQIEDISNKAAQKKQELAEQVKDFSKNFDSFKN
        MAGGNF+HRV SYLVNEVLVNSLANSRSFQRFAVRTSKQIEDIS KAAQKKQELAEQ+KD SKNF+SFKN
Subjt:  MAGGNFVHRVFSYLVNEVLVNSLANSRSFQRFAVRTSKQIEDISNKAAQKKQELAEQVKDFSKNFDSFKN
A0A6J1IZW4 uncharacterized protein LOC1114821821.9e-2592.86Show/hide
Query:  MAGGNFVHRVFSYLVNEVLVNSLANSRSFQRFAVRTSKQIEDISNKAAQKKQELAEQVKDFSKNFDSFKN
        MAGGNF+HRV SYLVNEVLVNSLANSR+FQRFAVRTSKQIEDISNKAA+KKQELAEQVKD SKNFDSFKN
Subjt:  MAGGNFVHRVFSYLVNEVLVNSLANSRSFQRFAVRTSKQIEDISNKAAQKKQELAEQVKDFSKNFDSFKN
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G01350.1 unknown protein2.1e-1658.21Show/hide
Query:  GGNFVHRVFSYLVNEVLVNSLANSRSFQRFAVRTSKQIEDISNKAAQKKQELAEQVKDFSKNFDSFK
        GGNF+ RV SY+ NE +VN LANS +FQRFAVRTSK+IE++S  AA+ ++++A+Q+++F+KN DS K
Subjt:  GGNFVHRVFSYLVNEVLVNSLANSRSFQRFAVRTSKQIEDISNKAAQKKQELAEQVKDFSKNFDSFK

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGGTGGAAATTTCGTCCACAGAGTATTTTCTTACCTCGTGAATGAGGTTCTCGTCAACAGTCTTGCAAACAGCCGTTCCTTTCAAAGGTTTGCTGTGAGGACATC
GAAACAAATTGAGGATATATCTAACAAGGCTGCACAGAAGAAGCAAGAACTAGCAGAACAAGTGAAAGATTTCTCCAAAAATTTTGATTCTTTCAAGAACCATTAA
mRNA sequenceShow/hide mRNA sequence
GAAAAATTGAATCTCATTTGAATATTGAGTATTGGTTGTCCAACTTTGAAATGATAAAATTGATCCTCAACCATATACAAATGTTAAAATATGTAGAATTATAAGGTTCT
GGTTTTCCTACAACCACGCACATTATAAATTGAGGCGAGAAGTCCGGCTGCCGCGTAGAGAGCCTGGTTGGCTTGCGATCGAGGGAAATTAGGGCATCATACCTTTGTCA
TCTCCGACGCTATTGTTTACGCATCTGAATTGGTATTGATTTATTTTAATTTCTGGAAACGAGAATGGCGGGTGGAAATTTCGTCCACAGAGTATTTTCTTACCTCGTGA
ATGAGGTTCTCGTCAACAGTCTTGCAAACAGCCGTTCCTTTCAAAGGTTTGCTGTGAGGACATCGAAACAAATTGAGGATATATCTAACAAGGCTGCACAGAAGAAGCAA
GAACTAGCAGAACAAGTGAAAGATTTCTCCAAAAATTTTGATTCTTTCAAGAACCATTAATGCGGAGTGGAACGTTTTACTGCAACATGATGTAAATCATATTCCAATTT
TACTCATAATAGTCGCAGATTCCCAGAAGATTTGTTTAATGACTTTAATCTTGTCTATCTGTTGAGTAATCGTGACAGTAGAATTCTAGATTTGTTCTTGGTTACCTGGT
ACCGTTGCCTGTAATTGAAGTGCAGATGGACTGATTTCTTCCTTGGCTTATTGCATGTTTCTGATTTTGTAGCTTTTTTTCCCCGCCACTATCATCATTGGACTGTGGGA
TTTTTAAACAGGGTCTTGAAACAAAGATATGGCAATTGAAAAATAA
Protein sequenceShow/hide protein sequence
MAGGNFVHRVFSYLVNEVLVNSLANSRSFQRFAVRTSKQIEDISNKAAQKKQELAEQVKDFSKNFDSFKNH