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PI0004960 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0004960
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionGag-pol polyprotein
Genome locationchr11:13528063..13532780
RNA-Seq ExpressionPI0004960
SyntenyPI0004960
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041781.1 gag-pol polyprotein [Cucumis melo var. makuwa]6.4e-0936.99Show/hide
Query:  AHRIRTCDLEAGDDNSLSILERKLEEV-IKK----WQEDLYVLEQQKNRILELVEDNHRLLQTISDIKKELKSAKSENDRMSKSVWMLNSGTKDLNHILS
        A  IR  D E  DD+S  ++ERK +E+ I+K    W+ED      QK RI +L+E+N RL+  IS +K +LK  +++ND + KSV MLNSGT++L+ IL 
Subjt:  AHRIRTCDLEAGDDNSLSILERKLEEV-IKK----WQEDLYVLEQQKNRILELVEDNHRLLQTISDIKKELKSAKSENDRMSKSVWMLNSGTKDLNHILS

Query:  SEKSISNKQGSNSEHQSTLSERDDELHFPDCAPSTRVQKNHPTSDI
        +E + S++ G      ++ S+   E+ F   +        H  +DI
Subjt:  SEKSISNKQGSNSEHQSTLSERDDELHFPDCAPSTRVQKNHPTSDI

KAA0053200.1 gag-pol polyprotein [Cucumis melo var. makuwa]1.6e-0732.45Show/hide
Query:  AHRIRTCDLEAGDDNSLSILERKLEEVIKK----WQEDLYVLEQQKNRILELVEDNHRLLQTISDIKKELKSAKSENDRMSKSVWMLNSGTKDLNHILSS
        A  IR  D    DD+  S+  +  E +I+K    W+ED      QK RI +L+E+N RL+  IS +K +L+  ++END++ KS  MLNSGT++L+ IL +
Subjt:  AHRIRTCDLEAGDDNSLSILERKLEEVIKK----WQEDLYVLEQQKNRILELVEDNHRLLQTISDIKKELKSAKSENDRMSKSVWMLNSGTKDLNHILSS

Query:  EKSISNKQGSNSEHQSTLSERDDELHFPDCAPSTRVQKNHPTSDIIGPLDS
          + S++ G      ++ S+   E+ F   +        H  + I  P+ S
Subjt:  EKSISNKQGSNSEHQSTLSERDDELHFPDCAPSTRVQKNHPTSDIIGPLDS

KAA0053561.1 gag-pol polyprotein [Cucumis melo var. makuwa]2.9e-0931.44Show/hide
Query:  RGRQTNGRMSARCGSDERAS--WVAKNEGKKGV----------AHRIRTCDLEAGDDNSLSILER----KLEEVIKKWQEDLYVLEQQKNRILELVEDNH
        R R  NG       + +R S  ++ K E K+ V          A  IR  D    DD+  S+  +     +E++   W+ED      QK+RI +L+E+N 
Subjt:  RGRQTNGRMSARCGSDERAS--WVAKNEGKKGV----------AHRIRTCDLEAGDDNSLSILER----KLEEVIKKWQEDLYVLEQQKNRILELVEDNH

Query:  RLLQTISDIKKELKSAKSENDRMSKSVWMLNSGTKDLNHILSSEKSISNKQGSNSEHQSTLSERDDELHFPDCAPSTRVQKNHPTSDIIGPLDS
        RL+  IS +K +L+  ++END++ KSV MLNSGTK+L+ IL +E + S++ G      ++ SE   E+ F   +        H  + I  P+ S
Subjt:  RLLQTISDIKKELKSAKSENDRMSKSVWMLNSGTKDLNHILSSEKSISNKQGSNSEHQSTLSERDDELHFPDCAPSTRVQKNHPTSDIIGPLDS

TYK01584.1 putative envelope-like protein [Cucumis melo var. makuwa]4.9e-0947.37Show/hide
Query:  LEEVIKKWQEDLYVLEQQKNRILELVEDNHRLLQTISDIKKELKSAKSENDRMSKSVWMLNSGTKDLNHILSSEKSISNKQG---SNSEHQSTLS
        LEEV+  W+ED  VL QQ+ +I+ L ++N RL++ IS++K ELK+AK E D ++KSV ML+ GT  L+ ILS EK  ++K+G   S  E   T S
Subjt:  LEEVIKKWQEDLYVLEQQKNRILELVEDNHRLLQTISDIKKELKSAKSENDRMSKSVWMLNSGTKDLNHILSSEKSISNKQG---SNSEHQSTLS

TYK19154.1 gag-pol polyprotein [Cucumis melo var. makuwa]2.9e-0931.44Show/hide
Query:  RGRQTNGRMSARCGSDERAS--WVAKNEGKKGV----------AHRIRTCDLEAGDDNSLSILER----KLEEVIKKWQEDLYVLEQQKNRILELVEDNH
        R R  NG       + +R S  ++ K E K+ V          A  IR  D    DD+  S+  +     +E++   W+ED      QK+RI +L+E+N 
Subjt:  RGRQTNGRMSARCGSDERAS--WVAKNEGKKGV----------AHRIRTCDLEAGDDNSLSILER----KLEEVIKKWQEDLYVLEQQKNRILELVEDNH

Query:  RLLQTISDIKKELKSAKSENDRMSKSVWMLNSGTKDLNHILSSEKSISNKQGSNSEHQSTLSERDDELHFPDCAPSTRVQKNHPTSDIIGPLDS
        RL+  IS +K +L+  ++END++ KSV MLNSGTK+L+ IL +E + S++ G      ++ SE   E+ F   +        H  + I  P+ S
Subjt:  RLLQTISDIKKELKSAKSENDRMSKSVWMLNSGTKDLNHILSSEKSISNKQGSNSEHQSTLSERDDELHFPDCAPSTRVQKNHPTSDIIGPLDS

TrEMBL top hitse value%identityAlignment
A0A5A7TJI2 Gag-pol polyprotein3.1e-0936.99Show/hide
Query:  AHRIRTCDLEAGDDNSLSILERKLEEV-IKK----WQEDLYVLEQQKNRILELVEDNHRLLQTISDIKKELKSAKSENDRMSKSVWMLNSGTKDLNHILS
        A  IR  D E  DD+S  ++ERK +E+ I+K    W+ED      QK RI +L+E+N RL+  IS +K +LK  +++ND + KSV MLNSGT++L+ IL 
Subjt:  AHRIRTCDLEAGDDNSLSILERKLEEV-IKK----WQEDLYVLEQQKNRILELVEDNHRLLQTISDIKKELKSAKSENDRMSKSVWMLNSGTKDLNHILS

Query:  SEKSISNKQGSNSEHQSTLSERDDELHFPDCAPSTRVQKNHPTSDI
        +E + S++ G      ++ S+   E+ F   +        H  +DI
Subjt:  SEKSISNKQGSNSEHQSTLSERDDELHFPDCAPSTRVQKNHPTSDI

A0A5A7UDB5 Gag-pol polyprotein7.6e-0832.45Show/hide
Query:  AHRIRTCDLEAGDDNSLSILERKLEEVIKK----WQEDLYVLEQQKNRILELVEDNHRLLQTISDIKKELKSAKSENDRMSKSVWMLNSGTKDLNHILSS
        A  IR  D    DD+  S+  +  E +I+K    W+ED      QK RI +L+E+N RL+  IS +K +L+  ++END++ KS  MLNSGT++L+ IL +
Subjt:  AHRIRTCDLEAGDDNSLSILERKLEEVIKK----WQEDLYVLEQQKNRILELVEDNHRLLQTISDIKKELKSAKSENDRMSKSVWMLNSGTKDLNHILSS

Query:  EKSISNKQGSNSEHQSTLSERDDELHFPDCAPSTRVQKNHPTSDIIGPLDS
          + S++ G      ++ S+   E+ F   +        H  + I  P+ S
Subjt:  EKSISNKQGSNSEHQSTLSERDDELHFPDCAPSTRVQKNHPTSDIIGPLDS

A0A5A7UJA4 Gag-pol polyprotein1.4e-0931.44Show/hide
Query:  RGRQTNGRMSARCGSDERAS--WVAKNEGKKGV----------AHRIRTCDLEAGDDNSLSILER----KLEEVIKKWQEDLYVLEQQKNRILELVEDNH
        R R  NG       + +R S  ++ K E K+ V          A  IR  D    DD+  S+  +     +E++   W+ED      QK+RI +L+E+N 
Subjt:  RGRQTNGRMSARCGSDERAS--WVAKNEGKKGV----------AHRIRTCDLEAGDDNSLSILER----KLEEVIKKWQEDLYVLEQQKNRILELVEDNH

Query:  RLLQTISDIKKELKSAKSENDRMSKSVWMLNSGTKDLNHILSSEKSISNKQGSNSEHQSTLSERDDELHFPDCAPSTRVQKNHPTSDIIGPLDS
        RL+  IS +K +L+  ++END++ KSV MLNSGTK+L+ IL +E + S++ G      ++ SE   E+ F   +        H  + I  P+ S
Subjt:  RLLQTISDIKKELKSAKSENDRMSKSVWMLNSGTKDLNHILSSEKSISNKQGSNSEHQSTLSERDDELHFPDCAPSTRVQKNHPTSDIIGPLDS

A0A5D3BQY7 Putative envelope-like protein2.4e-0947.37Show/hide
Query:  LEEVIKKWQEDLYVLEQQKNRILELVEDNHRLLQTISDIKKELKSAKSENDRMSKSVWMLNSGTKDLNHILSSEKSISNKQG---SNSEHQSTLS
        LEEV+  W+ED  VL QQ+ +I+ L ++N RL++ IS++K ELK+AK E D ++KSV ML+ GT  L+ ILS EK  ++K+G   S  E   T S
Subjt:  LEEVIKKWQEDLYVLEQQKNRILELVEDNHRLLQTISDIKKELKSAKSENDRMSKSVWMLNSGTKDLNHILSSEKSISNKQG---SNSEHQSTLS

A0A5D3D6G0 Gag-pol polyprotein1.4e-0931.44Show/hide
Query:  RGRQTNGRMSARCGSDERAS--WVAKNEGKKGV----------AHRIRTCDLEAGDDNSLSILER----KLEEVIKKWQEDLYVLEQQKNRILELVEDNH
        R R  NG       + +R S  ++ K E K+ V          A  IR  D    DD+  S+  +     +E++   W+ED      QK+RI +L+E+N 
Subjt:  RGRQTNGRMSARCGSDERAS--WVAKNEGKKGV----------AHRIRTCDLEAGDDNSLSILER----KLEEVIKKWQEDLYVLEQQKNRILELVEDNH

Query:  RLLQTISDIKKELKSAKSENDRMSKSVWMLNSGTKDLNHILSSEKSISNKQGSNSEHQSTLSERDDELHFPDCAPSTRVQKNHPTSDIIGPLDS
        RL+  IS +K +L+  ++END++ KSV MLNSGTK+L+ IL +E + S++ G      ++ SE   E+ F   +        H  + I  P+ S
Subjt:  RLLQTISDIKKELKSAKSENDRMSKSVWMLNSGTKDLNHILSSEKSISNKQGSNSEHQSTLSERDDELHFPDCAPSTRVQKNHPTSDIIGPLDS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACACGTGGCAGGCAGACAAACGGGCGGATGAGCGCGCGTTGCGGGTCGGACGAGCGCGCTTCGTGGGTCGCAAAAAATGAAGGAAAAAAAGGTGTTGCACATCGGAT
TCGAACTTGTGACCTTGAAGCGGGTGATGACAATTCTCTAAGTATTCTTGAAAGAAAACTGGAGGAAGTCATTAAGAAGTGGCAGGAGGACCTATATGTTCTTGAACAAC
AAAAGAACAGAATTCTTGAACTGGTTGAGGACAATCACAGATTATTACAAACCATTTCAGACATAAAAAAGGAGTTGAAAAGTGCCAAAAGTGAAAATGATCGAATGTCC
AAATCTGTTTGGATGCTCAATTCAGGAACAAAAGACTTGAATCACATACTGAGTTCGGAAAAATCTATTTCTAACAAACAAGGTTCCAACAGTGAACACCAATCAACTCT
CTCAGAAAGAGATGATGAACTTCATTTTCCTGATTGTGCACCTTCAACTAGAGTACAAAAGAACCATCCTACCAGTGACATTATAGGTCCTTTAGATTCAGGTGTTACTA
CCAGAAGAAAGGAAAAACTAGATTATGTAGATCATTTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGACACGTGGCAGGCAGACAAACGGGCGGATGAGCGCGCGTTGCGGGTCGGACGAGCGCGCTTCGTGGGTCGCAAAAAATGAAGGAAAAAAAGGTGTTGCACATCGGAT
TCGAACTTGTGACCTTGAAGCGGGTGATGACAATTCTCTAAGTATTCTTGAAAGAAAACTGGAGGAAGTCATTAAGAAGTGGCAGGAGGACCTATATGTTCTTGAACAAC
AAAAGAACAGAATTCTTGAACTGGTTGAGGACAATCACAGATTATTACAAACCATTTCAGACATAAAAAAGGAGTTGAAAAGTGCCAAAAGTGAAAATGATCGAATGTCC
AAATCTGTTTGGATGCTCAATTCAGGAACAAAAGACTTGAATCACATACTGAGTTCGGAAAAATCTATTTCTAACAAACAAGGTTCCAACAGTGAACACCAATCAACTCT
CTCAGAAAGAGATGATGAACTTCATTTTCCTGATTGTGCACCTTCAACTAGAGTACAAAAGAACCATCCTACCAGTGACATTATAGGTCCTTTAGATTCAGGTGTTACTA
CCAGAAGAAAGGAAAAACTAGATTATGTAGATCATTTTTAG
Protein sequenceShow/hide protein sequence
MTRGRQTNGRMSARCGSDERASWVAKNEGKKGVAHRIRTCDLEAGDDNSLSILERKLEEVIKKWQEDLYVLEQQKNRILELVEDNHRLLQTISDIKKELKSAKSENDRMS
KSVWMLNSGTKDLNHILSSEKSISNKQGSNSEHQSTLSERDDELHFPDCAPSTRVQKNHPTSDIIGPLDSGVTTRRKEKLDYVDHF