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PI0004973 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0004973
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein, putative, unclassified
Genome locationchr02:13502368..13503421
RNA-Seq ExpressionPI0004973
SyntenyPI0004973
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0054681.1 retrotransposon protein, putative, unclassified [Cucumis melo var. makuwa]1.6e-0867.24Show/hide
Query:  GSGGLVREGGVVSPQ----GGLGCALPFAPVYSLGERWQMVNQMTHAGGISSGMGRGF
        G G    E  VV PQ    GGLGCALPFAPVYSLGER  M NQM HA GI+SGMG GF
Subjt:  GSGGLVREGGVVSPQ----GGLGCALPFAPVYSLGERWQMVNQMTHAGGISSGMGRGF

TYK03178.1 hypothetical protein E5676_scaffold11G00830 [Cucumis melo var. makuwa]6.1e-0831.08Show/hide
Query:  GFELKSTMKAKQFTMDLSEKHMRDGFSNLGLDIGELKDDYGSDPSIISYSKDDSFLTTPVPMEKVSSSPLVLCPPAGSGGLVREGGVVSPQ---------
        GF   ++ K     M   E      F N    +  LK    +  ++ S+S       T  PM K +S   +     G G      GV SP          
Subjt:  GFELKSTMKAKQFTMDLSEKHMRDGFSNLGLDIGELKDDYGSDPSIISYSKDDSFLTTPVPMEKVSSSPLVLCPPAGSGGLVREGGVVSPQ---------

Query:  GGLGCALPFAPVYSLGERWQMVNQMTHAGGISSGMGRGFLPNDALPSDNKGKEGWEVLASVAIKKVEARDGNTLNGVNKEDGKGGGDKKKGREGTNRMIR
        G LGCALP + VYSLG+R  + N + HA G+ SG+G   LPND               + + +K+                   GGDK+K R+ + ++ R
Subjt:  GGLGCALPFAPVYSLGERWQMVNQMTHAGGISSGMGRGFLPNDALPSDNKGKEGWEVLASVAIKKVEARDGNTLNGVNKEDGKGGGDKKKGREGTNRMIR

Query:  ELKKLDNSVNYGGKRASSEAGL
        ELKKLDN VNYG K+A  E  L
Subjt:  ELKKLDNSVNYGGKRASSEAGL

TYK08591.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]1.6e-0867.24Show/hide
Query:  GSGGLVREGGVVSPQ----GGLGCALPFAPVYSLGERWQMVNQMTHAGGISSGMGRGF
        G G    E  VV PQ    GGLGCALPFAPVYSLGER  M NQM HA GI+SGMG GF
Subjt:  GSGGLVREGGVVSPQ----GGLGCALPFAPVYSLGERWQMVNQMTHAGGISSGMGRGF

TYK14182.1 reverse transcriptase [Cucumis melo var. makuwa]4.0e-0745.12Show/hide
Query:  QGGLGCALPFAPVYSLGERWQMVNQMTHAGGISSGMGRGFLPN-----------------DALPSDNKGKEGWEVLASVAIK
        QGG+GCALPFAPVYSL ERW + NQM  + G++S +G   L N                  ALPS+NK  E WE   + A K
Subjt:  QGGLGCALPFAPVYSLGERWQMVNQMTHAGGISSGMGRGFLPN-----------------DALPSDNKGKEGWEVLASVAIK

TrEMBL top hitse value%identityAlignment
A0A5A7UMB2 Retrotransposon protein, putative, unclassified7.8e-0967.24Show/hide
Query:  GSGGLVREGGVVSPQ----GGLGCALPFAPVYSLGERWQMVNQMTHAGGISSGMGRGF
        G G    E  VV PQ    GGLGCALPFAPVYSLGER  M NQM HA GI+SGMG GF
Subjt:  GSGGLVREGGVVSPQ----GGLGCALPFAPVYSLGERWQMVNQMTHAGGISSGMGRGF

A0A5D3BW32 Uncharacterized protein3.0e-0831.08Show/hide
Query:  GFELKSTMKAKQFTMDLSEKHMRDGFSNLGLDIGELKDDYGSDPSIISYSKDDSFLTTPVPMEKVSSSPLVLCPPAGSGGLVREGGVVSPQ---------
        GF   ++ K     M   E      F N    +  LK    +  ++ S+S       T  PM K +S   +     G G      GV SP          
Subjt:  GFELKSTMKAKQFTMDLSEKHMRDGFSNLGLDIGELKDDYGSDPSIISYSKDDSFLTTPVPMEKVSSSPLVLCPPAGSGGLVREGGVVSPQ---------

Query:  GGLGCALPFAPVYSLGERWQMVNQMTHAGGISSGMGRGFLPNDALPSDNKGKEGWEVLASVAIKKVEARDGNTLNGVNKEDGKGGGDKKKGREGTNRMIR
        G LGCALP + VYSLG+R  + N + HA G+ SG+G   LPND               + + +K+                   GGDK+K R+ + ++ R
Subjt:  GGLGCALPFAPVYSLGERWQMVNQMTHAGGISSGMGRGFLPNDALPSDNKGKEGWEVLASVAIKKVEARDGNTLNGVNKEDGKGGGDKKKGREGTNRMIR

Query:  ELKKLDNSVNYGGKRASSEAGL
        ELKKLDN VNYG K+A  E  L
Subjt:  ELKKLDNSVNYGGKRASSEAGL

A0A5D3C9P5 Ty3/gypsy retrotransposon protein7.8e-0967.24Show/hide
Query:  GSGGLVREGGVVSPQ----GGLGCALPFAPVYSLGERWQMVNQMTHAGGISSGMGRGF
        G G    E  VV PQ    GGLGCALPFAPVYSLGER  M NQM HA GI+SGMG GF
Subjt:  GSGGLVREGGVVSPQ----GGLGCALPFAPVYSLGERWQMVNQMTHAGGISSGMGRGF

A0A5D3CS18 Reverse transcriptase1.9e-0745.12Show/hide
Query:  QGGLGCALPFAPVYSLGERWQMVNQMTHAGGISSGMGRGFLPN-----------------DALPSDNKGKEGWEVLASVAIK
        QGG+GCALPFAPVYSL ERW + NQM  + G++S +G   L N                  ALPS+NK  E WE   + A K
Subjt:  QGGLGCALPFAPVYSLGERWQMVNQMTHAGGISSGMGRGFLPN-----------------DALPSDNKGKEGWEVLASVAIK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTCTAAGCTCTAATCATAAAAAATTAGGGTTTGAATTGAAATCTACAATGAAGGCTAAACAGTTCACTATGGACTTATCCGAAAAGCATATGAGGGATGGGTTTTC
GAATCTGGGTCTTGATATAGGAGAACTCAAAGATGATTATGGATCTGACCCATCAATAATTAGCTACTCGAAAGATGATTCGTTCTTAACGACGCCGGTGCCTATGGAAA
AGGTAAGTTCTTCTCCATTGGTTCTTTGTCCTCCAGCGGGGTCGGGTGGATTAGTGAGAGAGGGAGGAGTTGTGTCACCTCAGGGAGGTTTGGGGTGTGCCTTACCCTTT
GCGCCGGTTTATTCTTTGGGAGAGAGATGGCAAATGGTTAATCAAATGACCCATGCTGGGGGAATCAGTTCAGGAATGGGCAGGGGGTTTCTTCCCAACGATGCCTTGCC
TAGTGATAATAAAGGAAAGGAGGGTTGGGAGGTGTTAGCTTCGGTGGCCATTAAAAAAGTGGAGGCTAGAGATGGAAATACCTTGAATGGGGTCAATAAGGAGGATGGGA
AGGGAGGTGGAGACAAAAAGAAAGGTAGGGAAGGTACCAATAGGATGATTAGGGAGCTAAAGAAATTGGACAACTCGGTGAATTATGGGGGTAAGAGAGCCTCTTCCGAG
GCGGGTCTGTGA
mRNA sequenceShow/hide mRNA sequence
CGTGAAGGTGATTCGAAAGTGGGCAGGGTTGTTTCAGTGTTTGAAGAAGTGGAGGATGGTTCTACGGGGACCCAGAAAATTGCCTTGTTGAGTAAAGGCAATATTAGGAA
AAGTTAGCCGATTTTTAGAAGGGAGGCTCAAGAAGTTAAAGAAATGGGTCTAAGCTCTAATCATAAAAAATTAGGGTTTGAATTGAAATCTACAATGAAGGCTAAACAGT
TCACTATGGACTTATCCGAAAAGCATATGAGGGATGGGTTTTCGAATCTGGGTCTTGATATAGGAGAACTCAAAGATGATTATGGATCTGACCCATCAATAATTAGCTAC
TCGAAAGATGATTCGTTCTTAACGACGCCGGTGCCTATGGAAAAGGTAAGTTCTTCTCCATTGGTTCTTTGTCCTCCAGCGGGGTCGGGTGGATTAGTGAGAGAGGGAGG
AGTTGTGTCACCTCAGGGAGGTTTGGGGTGTGCCTTACCCTTTGCGCCGGTTTATTCTTTGGGAGAGAGATGGCAAATGGTTAATCAAATGACCCATGCTGGGGGAATCA
GTTCAGGAATGGGCAGGGGGTTTCTTCCCAACGATGCCTTGCCTAGTGATAATAAAGGAAAGGAGGGTTGGGAGGTGTTAGCTTCGGTGGCCATTAAAAAAGTGGAGGCT
AGAGATGGAAATACCTTGAATGGGGTCAATAAGGAGGATGGGAAGGGAGGTGGAGACAAAAAGAAAGGTAGGGAAGGTACCAATAGGATGATTAGGGAGCTAAAGAAATT
GGACAACTCGGTGAATTATGGGGGTAAGAGAGCCTCTTCCGAGGCGGGTCTGTGA
Protein sequenceShow/hide protein sequence
MGLSSNHKKLGFELKSTMKAKQFTMDLSEKHMRDGFSNLGLDIGELKDDYGSDPSIISYSKDDSFLTTPVPMEKVSSSPLVLCPPAGSGGLVREGGVVSPQGGLGCALPF
APVYSLGERWQMVNQMTHAGGISSGMGRGFLPNDALPSDNKGKEGWEVLASVAIKKVEARDGNTLNGVNKEDGKGGGDKKKGREGTNRMIRELKKLDNSVNYGGKRASSE
AGL