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PI0004981 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0004981
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr06:11764012..11765619
RNA-Seq ExpressionPI0004981
SyntenyPI0004981
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036886.1 zf-RVT domain-containing protein [Cucumis melo var. makuwa]2.8e-3263.81Show/hide
Query:  AWIRDLQDVCHPFDERGLNIREGKSWNSACILKILWLMLTSLRSLWVAWVEAYILKRRSLWSVNSEIDRFWCLCAILRQRDSLREHVHMEVGDGRRCLVW
        AW+    DVC PF+E GL IR+G SWN A  LKILWLMLT+  SLWVAW+EAYILK +SLW V+S + R WC  AILR+R+ L+ HV M+VG+G RC VW
Subjt:  AWIRDLQDVCHPFDERGLNIREGKSWNSACILKILWLMLTSLRSLWVAWVEAYILKRRSLWSVNSEIDRFWCLCAILRQRDSLREHVHMEVGDGRRCLVW

Query:  LDPWL
        LDPWL
Subjt:  LDPWL

KAA0046247.1 uncharacterized protein E6C27_scaffold284G00450 [Cucumis melo var. makuwa]1.7e-3467.62Show/hide
Query:  AWIRDLQDVCHPFDERGLNIREGKSWNSACILKILWLMLTSLRSLWVAWVEAYILKRRSLWSVNSEIDRFWCLCAILRQRDSLREHVHMEVGDGRRCLVW
        AW+    DVC PF+E GL IR+G SWN A  LKILWLMLT+  SLWVAWVEAYILKRRSLW V+S + R WCL AILR+R+ L+ HV M+VG+G RC VW
Subjt:  AWIRDLQDVCHPFDERGLNIREGKSWNSACILKILWLMLTSLRSLWVAWVEAYILKRRSLWSVNSEIDRFWCLCAILRQRDSLREHVHMEVGDGRRCLVW

Query:  LDPWL
        LDPWL
Subjt:  LDPWL

TYJ96685.1 zf-RVT domain-containing protein [Cucumis melo var. makuwa]2.8e-3263.81Show/hide
Query:  AWIRDLQDVCHPFDERGLNIREGKSWNSACILKILWLMLTSLRSLWVAWVEAYILKRRSLWSVNSEIDRFWCLCAILRQRDSLREHVHMEVGDGRRCLVW
        AW+    DVC PF+E GL IR+G SWN A  LKILWLMLT+  SLWVAW+EAYILK +SLW V+S + R WC  AILR+R+ L+ HV M+VG+G RC VW
Subjt:  AWIRDLQDVCHPFDERGLNIREGKSWNSACILKILWLMLTSLRSLWVAWVEAYILKRRSLWSVNSEIDRFWCLCAILRQRDSLREHVHMEVGDGRRCLVW

Query:  LDPWL
        LDPWL
Subjt:  LDPWL

TYK18951.1 uncharacterized protein E5676_scaffold418G00380 [Cucumis melo var. makuwa]1.7e-3467.62Show/hide
Query:  AWIRDLQDVCHPFDERGLNIREGKSWNSACILKILWLMLTSLRSLWVAWVEAYILKRRSLWSVNSEIDRFWCLCAILRQRDSLREHVHMEVGDGRRCLVW
        AW+    DVC PF+E GL IR+G SWN A  LKILWLMLT+  SLWVAWVEAYILKRRSLW V+S + R WCL AILR+R+ L+ HV M+VG+G RC VW
Subjt:  AWIRDLQDVCHPFDERGLNIREGKSWNSACILKILWLMLTSLRSLWVAWVEAYILKRRSLWSVNSEIDRFWCLCAILRQRDSLREHVHMEVGDGRRCLVW

Query:  LDPWL
        LDPWL
Subjt:  LDPWL

TYK26643.1 zf-RVT domain-containing protein [Cucumis melo var. makuwa]6.8e-3166.33Show/hide
Query:  DVCHPFDERGLNIREGKSWNSACILKILWLMLTSLRSLWVAWVEAYILKRRSLWSVNSEIDRFWCLCAILRQRDSLREHVHMEVGDGRRCLVWLDPWL
        +VC PF+E GL IR+G SWN    +KIL L+L S  SLW+AW +AYILK RSLW+VN+ I R WCL AIL +RDSL+EHV M VGDGRRC VWLDPWL
Subjt:  DVCHPFDERGLNIREGKSWNSACILKILWLMLTSLRSLWVAWVEAYILKRRSLWSVNSEIDRFWCLCAILRQRDSLREHVHMEVGDGRRCLVWLDPWL

TrEMBL top hitse value%identityAlignment
A0A5A7T440 Zf-RVT domain-containing protein1.3e-3263.81Show/hide
Query:  AWIRDLQDVCHPFDERGLNIREGKSWNSACILKILWLMLTSLRSLWVAWVEAYILKRRSLWSVNSEIDRFWCLCAILRQRDSLREHVHMEVGDGRRCLVW
        AW+    DVC PF+E GL IR+G SWN A  LKILWLMLT+  SLWVAW+EAYILK +SLW V+S + R WC  AILR+R+ L+ HV M+VG+G RC VW
Subjt:  AWIRDLQDVCHPFDERGLNIREGKSWNSACILKILWLMLTSLRSLWVAWVEAYILKRRSLWSVNSEIDRFWCLCAILRQRDSLREHVHMEVGDGRRCLVW

Query:  LDPWL
        LDPWL
Subjt:  LDPWL

A0A5A7TWG5 Reverse transcriptase domain-containing protein8.4e-3567.62Show/hide
Query:  AWIRDLQDVCHPFDERGLNIREGKSWNSACILKILWLMLTSLRSLWVAWVEAYILKRRSLWSVNSEIDRFWCLCAILRQRDSLREHVHMEVGDGRRCLVW
        AW+    DVC PF+E GL IR+G SWN A  LKILWLMLT+  SLWVAWVEAYILKRRSLW V+S + R WCL AILR+R+ L+ HV M+VG+G RC VW
Subjt:  AWIRDLQDVCHPFDERGLNIREGKSWNSACILKILWLMLTSLRSLWVAWVEAYILKRRSLWSVNSEIDRFWCLCAILRQRDSLREHVHMEVGDGRRCLVW

Query:  LDPWL
        LDPWL
Subjt:  LDPWL

A0A5D3BDZ6 Zf-RVT domain-containing protein1.3e-3263.81Show/hide
Query:  AWIRDLQDVCHPFDERGLNIREGKSWNSACILKILWLMLTSLRSLWVAWVEAYILKRRSLWSVNSEIDRFWCLCAILRQRDSLREHVHMEVGDGRRCLVW
        AW+    DVC PF+E GL IR+G SWN A  LKILWLMLT+  SLWVAW+EAYILK +SLW V+S + R WC  AILR+R+ L+ HV M+VG+G RC VW
Subjt:  AWIRDLQDVCHPFDERGLNIREGKSWNSACILKILWLMLTSLRSLWVAWVEAYILKRRSLWSVNSEIDRFWCLCAILRQRDSLREHVHMEVGDGRRCLVW

Query:  LDPWL
        LDPWL
Subjt:  LDPWL

A0A5D3D5X6 Reverse transcriptase domain-containing protein8.4e-3567.62Show/hide
Query:  AWIRDLQDVCHPFDERGLNIREGKSWNSACILKILWLMLTSLRSLWVAWVEAYILKRRSLWSVNSEIDRFWCLCAILRQRDSLREHVHMEVGDGRRCLVW
        AW+    DVC PF+E GL IR+G SWN A  LKILWLMLT+  SLWVAWVEAYILKRRSLW V+S + R WCL AILR+R+ L+ HV M+VG+G RC VW
Subjt:  AWIRDLQDVCHPFDERGLNIREGKSWNSACILKILWLMLTSLRSLWVAWVEAYILKRRSLWSVNSEIDRFWCLCAILRQRDSLREHVHMEVGDGRRCLVW

Query:  LDPWL
        LDPWL
Subjt:  LDPWL

A0A5D3DSS6 Zf-RVT domain-containing protein3.3e-3166.33Show/hide
Query:  DVCHPFDERGLNIREGKSWNSACILKILWLMLTSLRSLWVAWVEAYILKRRSLWSVNSEIDRFWCLCAILRQRDSLREHVHMEVGDGRRCLVWLDPWL
        +VC PF+E GL IR+G SWN    +KIL L+L S  SLW+AW +AYILK RSLW+VN+ I R WCL AIL +RDSL+EHV M VGDGRRC VWLDPWL
Subjt:  DVCHPFDERGLNIREGKSWNSACILKILWLMLTSLRSLWVAWVEAYILKRRSLWSVNSEIDRFWCLCAILRQRDSLREHVHMEVGDGRRCLVWLDPWL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G25720.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein1.1e-0727.45Show/hide
Query:  VCHPFDERGLNIREGKSWNSACILKILWLMLTSLRSLWVAWVEAYILKR------RSLWSVNSEIDRFWCLCAILRQRDSLREHVHMEVGDGRRCLVWLD
        VC P  E GL +R    WN+   LK++W + +   SLWV W   + L+          W+    +   W    +LR R      +   +G+G     W D
Subjt:  VCHPFDERGLNIREGKSWNSACILKILWLMLTSLRSLWVAWVEAYILKR------RSLWSVNSEIDRFWCLCAILRQRDSLREHVHMEVGDGRRCLVWLD

Query:  PW
         W
Subjt:  PW


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCATTGCCCGTGTGGCATGGGCGCTGGCCGTGTGGCATGGACGCTGGCCGTGTGGCATGGGCGCTGGCCTTGCTTGCGCGTGTAAAGCCTTAACACCTGGCCGCGT
GCTTGTGGCGCGCTCGCAAGTGCCATGCGTGCTTGTGACCAAGCGTTGCGCTGCGCATCCTGTGAGCGTGCGCTTGCCACTGCACAGGGTTGGCCTTGCGCTAACCCCTT
GCGCGCAGGGCCTTACCCGCATGGTCTTGCCGCATGGCCTTGTCGTTTGGTTGTGCCTTGGTCGTTCCATGTGCCTTCTTTACGCCAATATAACCTTTCTTAATACCTTG
CTCGCCTTGTCTGGACCTTGTCAAGCCCTTGACGCCTGGATTCGGGATTTACAAGATGTTTGTCACCCATTTGATGAGAGGGGTCTTAATATTCGTGAGGGGAAGTCGTG
GAATAGTGCGTGTATTTTGAAGATTCTTTGGTTGATGTTGACTAGTTTAAGGTCTTTGTGGGTGGCTTGGGTAGAGGCCTATATTCTAAAACGACGGTCATTGTGGTCTG
TGAACAGTGAGATTGATCGTTTCTGGTGTCTTTGTGCTATCCTGAGGCAGCGTGATAGCCTTAGAGAGCATGTCCATATGGAGGTTGGTGATGGGAGGCGTTGTCTTGTG
TGGCTTGACCCTTGGTTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGCATTGCCCGTGTGGCATGGGCGCTGGCCGTGTGGCATGGACGCTGGCCGTGTGGCATGGGCGCTGGCCTTGCTTGCGCGTGTAAAGCCTTAACACCTGGCCGCGT
GCTTGTGGCGCGCTCGCAAGTGCCATGCGTGCTTGTGACCAAGCGTTGCGCTGCGCATCCTGTGAGCGTGCGCTTGCCACTGCACAGGGTTGGCCTTGCGCTAACCCCTT
GCGCGCAGGGCCTTACCCGCATGGTCTTGCCGCATGGCCTTGTCGTTTGGTTGTGCCTTGGTCGTTCCATGTGCCTTCTTTACGCCAATATAACCTTTCTTAATACCTTG
CTCGCCTTGTCTGGACCTTGTCAAGCCCTTGACGCCTGGATTCGGGATTTACAAGATGTTTGTCACCCATTTGATGAGAGGGGTCTTAATATTCGTGAGGGGAAGTCGTG
GAATAGTGCGTGTATTTTGAAGATTCTTTGGTTGATGTTGACTAGTTTAAGGTCTTTGTGGGTGGCTTGGGTAGAGGCCTATATTCTAAAACGACGGTCATTGTGGTCTG
TGAACAGTGAGATTGATCGTTTCTGGTGTCTTTGTGCTATCCTGAGGCAGCGTGATAGCCTTAGAGAGCATGTCCATATGGAGGTTGGTGATGGGAGGCGTTGTCTTGTG
TGGCTTGACCCTTGGTTGTAG
Protein sequenceShow/hide protein sequence
MGIARVAWALAVWHGRWPCGMGAGLACACKALTPGRVLVARSQVPCVLVTKRCAAHPVSVRLPLHRVGLALTPCAQGLTRMVLPHGLVVWLCLGRSMCLLYANITFLNTL
LALSGPCQALDAWIRDLQDVCHPFDERGLNIREGKSWNSACILKILWLMLTSLRSLWVAWVEAYILKRRSLWSVNSEIDRFWCLCAILRQRDSLREHVHMEVGDGRRCLV
WLDPWL