; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0004989 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0004989
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr02:17166337..17167088
RNA-Seq ExpressionPI0004989
SyntenyPI0004989
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032766.1 retrotransposon protein [Cucumis melo var. makuwa]2.0e-4750.94Show/hide
Query:  MTSSSQTPKHIWTKEEESNLVECLVELVSIGGWKSDNGIFHLGYLTQLQRMTAEKMPGCNMQGSSTIDCRIKTMK------------SVSGHRRN-----
        M++S++ P+H+WT+EEE  LVECL+ELVS+GGWKSDNG F  GYL QL RM AEK+PGC ++ ++ IDCRIKT+K            + SG   N     
Subjt:  MTSSSQTPKHIWTKEEESNLVECLVELVSIGGWKSDNGIFHLGYLTQLQRMTAEKMPGCNMQGSSTIDCRIKTMK------------SVSGHRRN-----

Query:  -------------------GLLNKLFPHYNDLCYVFGKDRATGVHPETFAYVRSNVP-GGYEGFPADDGNDTEIPMMYSQRLDMSPDDIMDTRPGRSSEG
                           GLLNK FP+Y++L YVFG+DRATG   ETFA V SN P GGY+ F   DGN+ + P +YSQ +D+S DD+  +RP R+SEG
Subjt:  -------------------GLLNKLFPHYNDLCYVFGKDRATGVHPETFAYVRSNVP-GGYEGFPADDGNDTEIPMMYSQRLDMSPDDIMDTRPGRSSEG

Query:  RTGSSGSKRQDG
        RTGSSGSKR+ G
Subjt:  RTGSSGSKRQDG

KAA0033744.1 retrotransposon protein [Cucumis melo var. makuwa]2.0e-4750.94Show/hide
Query:  MTSSSQTPKHIWTKEEESNLVECLVELVSIGGWKSDNGIFHLGYLTQLQRMTAEKMPGCNMQGSSTIDCRIKTMK------------SVSGHRRN-----
        M++S++ P+H+WT+EEE  LVECL+ELVS+GGWKSDNG F  GYL QL RM AEK+PGC ++ ++ IDCRIKT+K            + SG   N     
Subjt:  MTSSSQTPKHIWTKEEESNLVECLVELVSIGGWKSDNGIFHLGYLTQLQRMTAEKMPGCNMQGSSTIDCRIKTMK------------SVSGHRRN-----

Query:  -------------------GLLNKLFPHYNDLCYVFGKDRATGVHPETFAYVRSNVP-GGYEGFPADDGNDTEIPMMYSQRLDMSPDDIMDTRPGRSSEG
                           GLLNK FP+Y++L YVFG+DRATG   ETFA V SN P GGY+ F   DGN+ + P +YSQ +D+S DD+  +RP R+SEG
Subjt:  -------------------GLLNKLFPHYNDLCYVFGKDRATGVHPETFAYVRSNVP-GGYEGFPADDGNDTEIPMMYSQRLDMSPDDIMDTRPGRSSEG

Query:  RTGSSGSKRQDG
        RTGSSGSKR+ G
Subjt:  RTGSSGSKRQDG

KAA0040114.1 retrotransposon protein [Cucumis melo var. makuwa]2.0e-4750.47Show/hide
Query:  MTSSSQTPKHIWTKEEESNLVECLVELVSIGGWKSDNGIFHLGYLTQLQRMTAEKMPGCNMQGSSTIDCRIKTMK------------SVSGHRRN-----
        M++S++ P+H+WT+E+E  LVECL+ELVS+GGWKSDNG F  GYL QL RM AEK+PGC ++ ++ IDCRIKT+K            + SG   N     
Subjt:  MTSSSQTPKHIWTKEEESNLVECLVELVSIGGWKSDNGIFHLGYLTQLQRMTAEKMPGCNMQGSSTIDCRIKTMK------------SVSGHRRN-----

Query:  -------------------GLLNKLFPHYNDLCYVFGKDRATGVHPETFAYVRSNVP-GGYEGFPADDGNDTEIPMMYSQRLDMSPDDIMDTRPGRSSEG
                           GLLNK FP+Y++L YVFG+DRATG   ETFA V SN P GGY+ F   DGN+ + P +YSQ +D+S DD+  +RP R+SEG
Subjt:  -------------------GLLNKLFPHYNDLCYVFGKDRATGVHPETFAYVRSNVP-GGYEGFPADDGNDTEIPMMYSQRLDMSPDDIMDTRPGRSSEG

Query:  RTGSSGSKRQDG
        RTGSSGSKR+ G
Subjt:  RTGSSGSKRQDG

KAA0045008.1 retrotransposon protein [Cucumis melo var. makuwa]1.1e-4750.47Show/hide
Query:  MTSSSQTPKHIWTKEEESNLVECLVELVSIGGWKSDNGIFHLGYLTQLQRMTAEKMPGCNMQGSSTIDCRIKTMKSV-----------------------
        M++S++ P+H+WT+EEE  LVECL+ELVSIGGWKSDNG F  GYL QL RM AEK+PGC ++ ++ IDCRIKT+K                         
Subjt:  MTSSSQTPKHIWTKEEESNLVECLVELVSIGGWKSDNGIFHLGYLTQLQRMTAEKMPGCNMQGSSTIDCRIKTMKSV-----------------------

Query:  -------------SGHRRNGLLNKLFPHYNDLCYVFGKDRATGVHPETFAYVRSNVP-GGYEGFPADDGNDTEIPMMYSQRLDMSPDDIMDTRPGRSSEG
                     S     GLLNK FP+Y++L YVFG+DRATG   ETFA V SN P GGY+ F   DGN+ + P +YSQ +D+S DD+  +RP R+SEG
Subjt:  -------------SGHRRNGLLNKLFPHYNDLCYVFGKDRATGVHPETFAYVRSNVP-GGYEGFPADDGNDTEIPMMYSQRLDMSPDDIMDTRPGRSSEG

Query:  RTGSSGSKRQDG
        RTGSSGSKR+ G
Subjt:  RTGSSGSKRQDG

KAA0050293.1 retrotransposon protein [Cucumis melo var. makuwa]2.0e-4750.47Show/hide
Query:  MTSSSQTPKHIWTKEEESNLVECLVELVSIGGWKSDNGIFHLGYLTQLQRMTAEKMPGCNMQGSSTIDCRIKTMK------------SVSGHRRN-----
        M++S++ P+H+WT+EEE  LVECL+ELVS+GGWKSDNG F  GYL QL RM A+K+PGC ++ ++ IDCRIKT+K            + SG   N     
Subjt:  MTSSSQTPKHIWTKEEESNLVECLVELVSIGGWKSDNGIFHLGYLTQLQRMTAEKMPGCNMQGSSTIDCRIKTMK------------SVSGHRRN-----

Query:  -------------------GLLNKLFPHYNDLCYVFGKDRATGVHPETFAYVRSNVPG-GYEGFPADDGNDTEIPMMYSQRLDMSPDDIMDTRPGRSSEG
                           GLLNK FP+Y++L YVFG+DRATG   ETFA V SN PG GY+ F   DGN+ + P++YSQ +D+S DD+  +RP R+SEG
Subjt:  -------------------GLLNKLFPHYNDLCYVFGKDRATGVHPETFAYVRSNVPG-GYEGFPADDGNDTEIPMMYSQRLDMSPDDIMDTRPGRSSEG

Query:  RTGSSGSKRQDG
        RTGSSGSKR+ G
Subjt:  RTGSSGSKRQDG

TrEMBL top hitse value%identityAlignment
A0A5A7SQY4 Retrotransposon protein9.5e-4854.08Show/hide
Query:  MTSSSQTPKHIWTKEEESNLVECLVELVSIGGWKSDNGIFHLGYLTQLQRMTAEKMPGCNMQGSSTIDCRIKTMK------------SVSGHRRN-----
        M++S++ P+H+WTKEEE  LVECL+ELVS+GGWKSDNG+F   YL QL RMT EK+PGC ++ ++ IDCRIKT+K            + SG   N     
Subjt:  MTSSSQTPKHIWTKEEESNLVECLVELVSIGGWKSDNGIFHLGYLTQLQRMTAEKMPGCNMQGSSTIDCRIKTMK------------SVSGHRRN-----

Query:  -----GLLNKLFPHYNDLCYVFGKDRATGVHPETFAYVRSNVP-GGYEGFPADDGNDTEIPMMYSQRLDMSPDDIMDTRPGRSSEGRTGSSGSKRQ
             GLLNK FP+Y++L YVFG+DRATG   ETFA V SN P GGY+ F   DGN+ E+P +YSQ +D+S D +  +RP R+ EGRTGSSGSKR+
Subjt:  -----GLLNKLFPHYNDLCYVFGKDRATGVHPETFAYVRSNVP-GGYEGFPADDGNDTEIPMMYSQRLDMSPDDIMDTRPGRSSEGRTGSSGSKRQ

A0A5A7SRU1 Retrotransposon protein9.5e-4850.94Show/hide
Query:  MTSSSQTPKHIWTKEEESNLVECLVELVSIGGWKSDNGIFHLGYLTQLQRMTAEKMPGCNMQGSSTIDCRIKTMK------------SVSGHRRN-----
        M++S++ P+H+WT+EEE  LVECL+ELVS+GGWKSDNG F  GYL QL RM AEK+PGC ++ ++ IDCRIKT+K            + SG   N     
Subjt:  MTSSSQTPKHIWTKEEESNLVECLVELVSIGGWKSDNGIFHLGYLTQLQRMTAEKMPGCNMQGSSTIDCRIKTMK------------SVSGHRRN-----

Query:  -------------------GLLNKLFPHYNDLCYVFGKDRATGVHPETFAYVRSNVP-GGYEGFPADDGNDTEIPMMYSQRLDMSPDDIMDTRPGRSSEG
                           GLLNK FP+Y++L YVFG+DRATG   ETFA V SN P GGY+ F   DGN+ + P +YSQ +D+S DD+  +RP R+SEG
Subjt:  -------------------GLLNKLFPHYNDLCYVFGKDRATGVHPETFAYVRSNVP-GGYEGFPADDGNDTEIPMMYSQRLDMSPDDIMDTRPGRSSEG

Query:  RTGSSGSKRQDG
        RTGSSGSKR+ G
Subjt:  RTGSSGSKRQDG

A0A5A7TQ37 Retrotransposon protein5.5e-4850.47Show/hide
Query:  MTSSSQTPKHIWTKEEESNLVECLVELVSIGGWKSDNGIFHLGYLTQLQRMTAEKMPGCNMQGSSTIDCRIKTMKSV-----------------------
        M++S++ P+H+WT+EEE  LVECL+ELVSIGGWKSDNG F  GYL QL RM AEK+PGC ++ ++ IDCRIKT+K                         
Subjt:  MTSSSQTPKHIWTKEEESNLVECLVELVSIGGWKSDNGIFHLGYLTQLQRMTAEKMPGCNMQGSSTIDCRIKTMKSV-----------------------

Query:  -------------SGHRRNGLLNKLFPHYNDLCYVFGKDRATGVHPETFAYVRSNVP-GGYEGFPADDGNDTEIPMMYSQRLDMSPDDIMDTRPGRSSEG
                     S     GLLNK FP+Y++L YVFG+DRATG   ETFA V SN P GGY+ F   DGN+ + P +YSQ +D+S DD+  +RP R+SEG
Subjt:  -------------SGHRRNGLLNKLFPHYNDLCYVFGKDRATGVHPETFAYVRSNVP-GGYEGFPADDGNDTEIPMMYSQRLDMSPDDIMDTRPGRSSEG

Query:  RTGSSGSKRQDG
        RTGSSGSKR+ G
Subjt:  RTGSSGSKRQDG

A0A5A7TRV1 Retrotransposon protein9.5e-4850.94Show/hide
Query:  MTSSSQTPKHIWTKEEESNLVECLVELVSIGGWKSDNGIFHLGYLTQLQRMTAEKMPGCNMQGSSTIDCRIKTMK------------SVSGHRRN-----
        M++S++ P+H+WT+EEE  LVECL+ELVS+GGWKSDNG F  GYL QL RM AEK+PGC ++ ++ IDCRIKT+K            + SG   N     
Subjt:  MTSSSQTPKHIWTKEEESNLVECLVELVSIGGWKSDNGIFHLGYLTQLQRMTAEKMPGCNMQGSSTIDCRIKTMK------------SVSGHRRN-----

Query:  -------------------GLLNKLFPHYNDLCYVFGKDRATGVHPETFAYVRSNVP-GGYEGFPADDGNDTEIPMMYSQRLDMSPDDIMDTRPGRSSEG
                           GLLNK FP+Y++L YVFG+DRATG   ETFA V SN P GGY+ F   DGN+ + P +YSQ +D+S DD+  +RP R+SEG
Subjt:  -------------------GLLNKLFPHYNDLCYVFGKDRATGVHPETFAYVRSNVP-GGYEGFPADDGNDTEIPMMYSQRLDMSPDDIMDTRPGRSSEG

Query:  RTGSSGSKRQDG
        RTGSSGSKR+ G
Subjt:  RTGSSGSKRQDG

A0A5D3DCZ1 Retrotransposon protein9.5e-4850.94Show/hide
Query:  MTSSSQTPKHIWTKEEESNLVECLVELVSIGGWKSDNGIFHLGYLTQLQRMTAEKMPGCNMQGSSTIDCRIKTMK------------SVSGHRRN-----
        M++S++ P+H+WT+EEE  LVECL+ELVS+GGWKSDNG F  GYL QL RM AEK+PGC ++ ++ IDCRIKT+K            + SG   N     
Subjt:  MTSSSQTPKHIWTKEEESNLVECLVELVSIGGWKSDNGIFHLGYLTQLQRMTAEKMPGCNMQGSSTIDCRIKTMK------------SVSGHRRN-----

Query:  -------------------GLLNKLFPHYNDLCYVFGKDRATGVHPETFAYVRSNVP-GGYEGFPADDGNDTEIPMMYSQRLDMSPDDIMDTRPGRSSEG
                           GLLNK FP+Y++L YVFG+DRATG   ETFA V SN P GGY+ F   DGN+ + P +YSQ +D+S DD+  +RP R+SEG
Subjt:  -------------------GLLNKLFPHYNDLCYVFGKDRATGVHPETFAYVRSNVP-GGYEGFPADDGNDTEIPMMYSQRLDMSPDDIMDTRPGRSSEG

Query:  RTGSSGSKRQDG
        RTGSSGSKR+ G
Subjt:  RTGSSGSKRQDG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACAAGTTCCTCCCAGACCCCCAAACACATCTGGACGAAAGAGGAAGAGTCCAACCTGGTCGAGTGCTTGGTGGAGTTGGTCTCTATCGGTGGCTGGAAGTCGGATAA
CGGTATCTTTCATCTTGGATACCTGACTCAGTTACAAAGAATGACGGCGGAGAAGATGCCAGGATGTAACATGCAGGGTTCGTCGACAATAGACTGTCGGATAAAAACCA
TGAAAAGCGTTTCAGGCCATCGTAGAAATGGCCTCCTAAACAAACTCTTTCCCCATTACAACGACCTGTGCTACGTATTTGGGAAAGATCGTGCGACGGGAGTGCACCCA
GAGACATTCGCCTATGTGAGGTCGAATGTGCCTGGAGGGTATGAAGGATTTCCCGCTGACGATGGAAACGATACGGAGATCCCTATGATGTACAGTCAGAGACTAGACAT
GTCGCCTGACGACATCATGGACACACGACCTGGTCGTTCGAGTGAGGGTAGGACTGGTTCAAGCGGATCGAAGAGGCAAGACGGTAAAGACTGTGGAAATCATTCGCAAT
GCAATGGACTACGTGAATGA
mRNA sequenceShow/hide mRNA sequence
ATGACAAGTTCCTCCCAGACCCCCAAACACATCTGGACGAAAGAGGAAGAGTCCAACCTGGTCGAGTGCTTGGTGGAGTTGGTCTCTATCGGTGGCTGGAAGTCGGATAA
CGGTATCTTTCATCTTGGATACCTGACTCAGTTACAAAGAATGACGGCGGAGAAGATGCCAGGATGTAACATGCAGGGTTCGTCGACAATAGACTGTCGGATAAAAACCA
TGAAAAGCGTTTCAGGCCATCGTAGAAATGGCCTCCTAAACAAACTCTTTCCCCATTACAACGACCTGTGCTACGTATTTGGGAAAGATCGTGCGACGGGAGTGCACCCA
GAGACATTCGCCTATGTGAGGTCGAATGTGCCTGGAGGGTATGAAGGATTTCCCGCTGACGATGGAAACGATACGGAGATCCCTATGATGTACAGTCAGAGACTAGACAT
GTCGCCTGACGACATCATGGACACACGACCTGGTCGTTCGAGTGAGGGTAGGACTGGTTCAAGCGGATCGAAGAGGCAAGACGGTAAAGACTGTGGAAATCATTCGCAAT
GCAATGGACTACGTGAATGA
Protein sequenceShow/hide protein sequence
MTSSSQTPKHIWTKEEESNLVECLVELVSIGGWKSDNGIFHLGYLTQLQRMTAEKMPGCNMQGSSTIDCRIKTMKSVSGHRRNGLLNKLFPHYNDLCYVFGKDRATGVHP
ETFAYVRSNVPGGYEGFPADDGNDTEIPMMYSQRLDMSPDDIMDTRPGRSSEGRTGSSGSKRQDGKDCGNHSQCNGLRE