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PI0004990 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0004990
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionMediator of RNA polymerase II transcription subunit 12-like isoform X1
Genome locationchr06:17606766..17607918
RNA-Seq ExpressionPI0004990
SyntenyPI0004990
Gene Ontology termsGO:0010073 - meristem maintenance (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0034013.1 serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa]1.5e-2666.02Show/hide
Query:  IQNIHYMYDVPIVPAPTQRRRAKVQEP-EFDEVDHHVEEVPPMTQTQNEAGYVSPMMMMLPFGMSYYP---GQSSYFRSGYYNLEAAPSSSNFGTKYYNL
        ++NIHYMYDVPIVPAP QRRR  VQEP + +EVD H EEVPPMTQTQ+E  YVSP+MMM  FG +YY    GQSS F  GYYN EA  SS++FG +YY+L
Subjt:  IQNIHYMYDVPIVPAPTQRRRAKVQEP-EFDEVDHHVEEVPPMTQTQNEAGYVSPMMMMLPFGMSYYP---GQSSYFRSGYYNLEAAPSSSNFGTKYYNL

Query:  GTD
        G+D
Subjt:  GTD

KAA0050408.1 mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa]9.6e-2665.05Show/hide
Query:  IQNIHYMYDVPIVPAPTQRRRAKVQEP-EFDEVDHHVEEVPPMTQTQNEAGYVSPMMMMLPFGMSYYP---GQSSYFRSGYYNLEAAPSSSNFGTKYYNL
        ++NIHYMYDVPI  AP QRR A VQ+P + +EVD HVEE+P MTQTQ+E  YVSP+MMM  FG +YY    GQSS F +GYYN EA+PSSSNFG +YY+L
Subjt:  IQNIHYMYDVPIVPAPTQRRRAKVQEP-EFDEVDHHVEEVPPMTQTQNEAGYVSPMMMMLPFGMSYYP---GQSSYFRSGYYNLEAAPSSSNFGTKYYNL

Query:  GTD
        G+D
Subjt:  GTD

KAA0054449.1 mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa]1.1e-2644.1Show/hide
Query:  MAPQLRNVNEHQLTGKVYGSR---------YMFDVLQVDQMIH---NTFLIYATKMSGTWR-----------------------------IQNIHYMYDV
        +APQL +VN +QL G+ YGSR           FD+    + IH   N   +Y T+                                   ++NIHYMYDV
Subjt:  MAPQLRNVNEHQLTGKVYGSR---------YMFDVLQVDQMIH---NTFLIYATKMSGTWR-----------------------------IQNIHYMYDV

Query:  PIVPAPTQRRRAKVQEP-EFDEVDHHVEEVPPM--TQTQNEAGYVSPMMMMLPFGMSYYP---GQSSYFRSGYYNLEAAPSSSNFGTKYYNLGTD
        PIV AP Q+RR  VQEP + +EVD H EEVPPM  TQTQ+E  YV P+MMM  FG +YY    GQSS F  GYYN EA  SS+NFG +YY+LG+D
Subjt:  PIVPAPTQRRRAKVQEP-EFDEVDHHVEEVPPM--TQTQNEAGYVSPMMMMLPFGMSYYP---GQSSYFRSGYYNLEAAPSSSNFGTKYYNLGTD

KAA0055624.1 serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa]4.3e-2665.05Show/hide
Query:  IQNIHYMYDVPIVPAPTQRRRAKVQEP-EFDEVDHHVEEVPPMTQTQNEAGYVSPMMMMLPFGMSYYP---GQSSYFRSGYYNLEAAPSSSNFGTKYYNL
        ++NIHYMYDVPIVPAP QRRR  VQEP + +EVD H EEVPPMTQT++E  YVSP+MMM  FG +YY    GQSS F  GYYN EA  SS++FG +YY+L
Subjt:  IQNIHYMYDVPIVPAPTQRRRAKVQEP-EFDEVDHHVEEVPPMTQTQNEAGYVSPMMMMLPFGMSYYP---GQSSYFRSGYYNLEAAPSSSNFGTKYYNL

Query:  GTD
        G+D
Subjt:  GTD

KAA0067080.1 mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa]1.5e-2666.02Show/hide
Query:  IQNIHYMYDVPIVPAPTQRRRAKVQEP-EFDEVDHHVEEVPPMTQTQNEAGYVSPMMMMLPFGMSYYP---GQSSYFRSGYYNLEAAPSSSNFGTKYYNL
        ++NIHYMYDVPIVPAP QRRR  VQEP + +EVD H EEVPPMTQTQ+E  YVSP+MMM  FG +YY    GQSS F  GYYN EA  SS++FG +YY+L
Subjt:  IQNIHYMYDVPIVPAPTQRRRAKVQEP-EFDEVDHHVEEVPPMTQTQNEAGYVSPMMMMLPFGMSYYP---GQSSYFRSGYYNLEAAPSSSNFGTKYYNL

Query:  GTD
        G+D
Subjt:  GTD

TrEMBL top hitse value%identityAlignment
A0A5A7SU33 Serine/threonine-protein phosphatase 7 long form-like protein7.2e-2766.02Show/hide
Query:  IQNIHYMYDVPIVPAPTQRRRAKVQEP-EFDEVDHHVEEVPPMTQTQNEAGYVSPMMMMLPFGMSYYP---GQSSYFRSGYYNLEAAPSSSNFGTKYYNL
        ++NIHYMYDVPIVPAP QRRR  VQEP + +EVD H EEVPPMTQTQ+E  YVSP+MMM  FG +YY    GQSS F  GYYN EA  SS++FG +YY+L
Subjt:  IQNIHYMYDVPIVPAPTQRRRAKVQEP-EFDEVDHHVEEVPPMTQTQNEAGYVSPMMMMLPFGMSYYP---GQSSYFRSGYYNLEAAPSSSNFGTKYYNL

Query:  GTD
        G+D
Subjt:  GTD

A0A5A7U558 Mediator of RNA polymerase II transcription subunit 12-like isoform X14.7e-2665.05Show/hide
Query:  IQNIHYMYDVPIVPAPTQRRRAKVQEP-EFDEVDHHVEEVPPMTQTQNEAGYVSPMMMMLPFGMSYYP---GQSSYFRSGYYNLEAAPSSSNFGTKYYNL
        ++NIHYMYDVPI  AP QRR A VQ+P + +EVD HVEE+P MTQTQ+E  YVSP+MMM  FG +YY    GQSS F +GYYN EA+PSSSNFG +YY+L
Subjt:  IQNIHYMYDVPIVPAPTQRRRAKVQEP-EFDEVDHHVEEVPPMTQTQNEAGYVSPMMMMLPFGMSYYP---GQSSYFRSGYYNLEAAPSSSNFGTKYYNL

Query:  GTD
        G+D
Subjt:  GTD

A0A5A7UKC7 Serine/threonine-protein phosphatase 7 long form-like protein2.1e-2665.05Show/hide
Query:  IQNIHYMYDVPIVPAPTQRRRAKVQEP-EFDEVDHHVEEVPPMTQTQNEAGYVSPMMMMLPFGMSYYP---GQSSYFRSGYYNLEAAPSSSNFGTKYYNL
        ++NIHYMYDVPIVPAP QRRR  VQEP + +EVD H EEVPPMTQT++E  YVSP+MMM  FG +YY    GQSS F  GYYN EA  SS++FG +YY+L
Subjt:  IQNIHYMYDVPIVPAPTQRRRAKVQEP-EFDEVDHHVEEVPPMTQTQNEAGYVSPMMMMLPFGMSYYP---GQSSYFRSGYYNLEAAPSSSNFGTKYYNL

Query:  GTD
        G+D
Subjt:  GTD

A0A5A7ULW8 Mediator of RNA polymerase II transcription subunit 12-like isoform X15.5e-2744.1Show/hide
Query:  MAPQLRNVNEHQLTGKVYGSR---------YMFDVLQVDQMIH---NTFLIYATKMSGTWR-----------------------------IQNIHYMYDV
        +APQL +VN +QL G+ YGSR           FD+    + IH   N   +Y T+                                   ++NIHYMYDV
Subjt:  MAPQLRNVNEHQLTGKVYGSR---------YMFDVLQVDQMIH---NTFLIYATKMSGTWR-----------------------------IQNIHYMYDV

Query:  PIVPAPTQRRRAKVQEP-EFDEVDHHVEEVPPM--TQTQNEAGYVSPMMMMLPFGMSYYP---GQSSYFRSGYYNLEAAPSSSNFGTKYYNLGTD
        PIV AP Q+RR  VQEP + +EVD H EEVPPM  TQTQ+E  YV P+MMM  FG +YY    GQSS F  GYYN EA  SS+NFG +YY+LG+D
Subjt:  PIVPAPTQRRRAKVQEP-EFDEVDHHVEEVPPM--TQTQNEAGYVSPMMMMLPFGMSYYP---GQSSYFRSGYYNLEAAPSSSNFGTKYYNLGTD

A0A5A7VIP6 Mediator of RNA polymerase II transcription subunit 12-like isoform X17.2e-2766.02Show/hide
Query:  IQNIHYMYDVPIVPAPTQRRRAKVQEP-EFDEVDHHVEEVPPMTQTQNEAGYVSPMMMMLPFGMSYYP---GQSSYFRSGYYNLEAAPSSSNFGTKYYNL
        ++NIHYMYDVPIVPAP QRRR  VQEP + +EVD H EEVPPMTQTQ+E  YVSP+MMM  FG +YY    GQSS F  GYYN EA  SS++FG +YY+L
Subjt:  IQNIHYMYDVPIVPAPTQRRRAKVQEP-EFDEVDHHVEEVPPMTQTQNEAGYVSPMMMMLPFGMSYYP---GQSSYFRSGYYNLEAAPSSSNFGTKYYNL

Query:  GTD
        G+D
Subjt:  GTD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTCCTCAGCTTCGAAATGTCAACGAACATCAATTAACTGGAAAGGTCTATGGTTCACGGTATATGTTTGACGTTCTTCAAGTTGACCAGATGATCCACAACACATT
CTTAATATATGCAACGAAAATGAGCGGTACATGGAGAATTCAAAATATACATTATATGTATGATGTACCCATTGTACCAGCACCAACCCAAAGGAGACGTGCTAAAGTGC
AAGAGCCTGAGTTTGACGAGGTTGACCATCACGTGGAAGAAGTGCCTCCTATGACACAAACACAAAATGAAGCTGGTTATGTTAGTCCAATGATGATGATGCTACCCTTT
GGTATGAGCTATTATCCTGGTCAATCGTCATACTTCAGATCAGGATATTATAATTTAGAGGCTGCTCCATCATCGTCAAACTTTGGAACAAAATATTACAATTTAGGGAC
CGACTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTCCTCAGCTTCGAAATGTCAACGAACATCAATTAACTGGAAAGGTCTATGGTTCACGGTATATGTTTGACGTTCTTCAAGTTGACCAGATGATCCACAACACATT
CTTAATATATGCAACGAAAATGAGCGGTACATGGAGAATTCAAAATATACATTATATGTATGATGTACCCATTGTACCAGCACCAACCCAAAGGAGACGTGCTAAAGTGC
AAGAGCCTGAGTTTGACGAGGTTGACCATCACGTGGAAGAAGTGCCTCCTATGACACAAACACAAAATGAAGCTGGTTATGTTAGTCCAATGATGATGATGCTACCCTTT
GGTATGAGCTATTATCCTGGTCAATCGTCATACTTCAGATCAGGATATTATAATTTAGAGGCTGCTCCATCATCGTCAAACTTTGGAACAAAATATTACAATTTAGGGAC
CGACTAA
Protein sequenceShow/hide protein sequence
MAPQLRNVNEHQLTGKVYGSRYMFDVLQVDQMIHNTFLIYATKMSGTWRIQNIHYMYDVPIVPAPTQRRRAKVQEPEFDEVDHHVEEVPPMTQTQNEAGYVSPMMMMLPF
GMSYYPGQSSYFRSGYYNLEAAPSSSNFGTKYYNLGTD