CuGenDBv2

Gene ID	PI0005030
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Gag/pol protein
Genome location	chr07:17343723..17347230
RNA-Seq Expression	PI0005030
Synteny	PI0005030
Gene Ontology terms	GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008234 - cysteine-type peptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0044955.1 gag/pol protein [Cucumis melo var. makuwa]

1.0e-63

67.16

Show/hide

Query:  MEQCPPSPSQNASQTVRDVYDRWTRANDKARVYILASMSGVLIKKHETMVTARQIMDSLREMFGQPSTQIWQEAIKHVYDARLNEGQSIREHVLDMIVHF
        +E+CP  P+ NA++TVR+ Y+RW +AN+KAR YILAS+S VL KKHE+M+TAR+IMDSL+EMFGQ S QI  +A+K++Y+AR+NEG S+REHVL+M+VHF
Subjt:  MEQCPPSPSQNASQTVRDVYDRWTRANDKARVYILASMSGVLIKKHETMVTARQIMDSLREMFGQPSTQIWQEAIKHVYDARLNEGQSIREHVLDMIVHF

Query:  NVAEMNGAVFDEKSQVYFILKSLSKSFLQFRSNMVMYKIEYKMTTLLNELQIFQSLMNNEGQKEGEANVAHS-RRFQKGSCSGTKFAPSFSGTKKIQNKK
        NVAEMNGAV DE SQV FIL+SL +SFLQFRSN VM KI Y +TTLLNELQ F+SLM  +GQK GEANVA S R+F +GS SGTK  PS SG KK + KK
Subjt:  NVAEMNGAVFDEKSQVYFILKSLSKSFLQFRSNMVMYKIEYKMTTLLNELQIFQSLMNNEGQKEGEANVAHS-RRFQKGSCSGTKFAPSFSGTKKIQNKK

Query:  G
        G
Subjt:  G

KAA0048404.1 gag/pol protein [Cucumis melo var. makuwa]

1.0e-63

67.16

Show/hide

Query:  MEQCPPSPSQNASQTVRDVYDRWTRANDKARVYILASMSGVLIKKHETMVTARQIMDSLREMFGQPSTQIWQEAIKHVYDARLNEGQSIREHVLDMIVHF
        +E+CP  P+ NA++TVR+ Y+RW +AN+KAR YILAS+S VL KKHE+M+TAR+IMDSL+EMFGQ S QI  +A+K++Y+AR+NEG S+REHVL+M+VHF
Subjt:  MEQCPPSPSQNASQTVRDVYDRWTRANDKARVYILASMSGVLIKKHETMVTARQIMDSLREMFGQPSTQIWQEAIKHVYDARLNEGQSIREHVLDMIVHF

Query:  NVAEMNGAVFDEKSQVYFILKSLSKSFLQFRSNMVMYKIEYKMTTLLNELQIFQSLMNNEGQKEGEANVAHS-RRFQKGSCSGTKFAPSFSGTKKIQNKK
        NVAEMNGAV DE SQV FIL+SL +SFLQFRSN VM KI Y +TTLLNELQ F+SLM  +GQK GEANVA S R+F +GS SGTK  PS SG KK + KK
Subjt:  NVAEMNGAVFDEKSQVYFILKSLSKSFLQFRSNMVMYKIEYKMTTLLNELQIFQSLMNNEGQKEGEANVAHS-RRFQKGSCSGTKFAPSFSGTKKIQNKK

Query:  G
        G
Subjt:  G

KAA0054490.1 gag/pol protein [Cucumis melo var. makuwa]

1.0e-63

67.16

Show/hide

Query:  MEQCPPSPSQNASQTVRDVYDRWTRANDKARVYILASMSGVLIKKHETMVTARQIMDSLREMFGQPSTQIWQEAIKHVYDARLNEGQSIREHVLDMIVHF
        +E+CP  P+ NA++TVR+ Y+RW +AN+KAR YILAS+S VL KKHE+M+TAR+IMDSL+EMFGQ S QI  +A+K++Y+AR+NEG S+REHVL+M+VHF
Subjt:  MEQCPPSPSQNASQTVRDVYDRWTRANDKARVYILASMSGVLIKKHETMVTARQIMDSLREMFGQPSTQIWQEAIKHVYDARLNEGQSIREHVLDMIVHF

Query:  NVAEMNGAVFDEKSQVYFILKSLSKSFLQFRSNMVMYKIEYKMTTLLNELQIFQSLMNNEGQKEGEANVAHS-RRFQKGSCSGTKFAPSFSGTKKIQNKK
        NVAEMNGAV DE SQV FIL+SL +SFLQFRSN VM KI Y +TTLLNELQ F+SLM  +GQK GEANVA S R+F +GS SGTK  PS SG KK + KK
Subjt:  NVAEMNGAVFDEKSQVYFILKSLSKSFLQFRSNMVMYKIEYKMTTLLNELQIFQSLMNNEGQKEGEANVAHS-RRFQKGSCSGTKFAPSFSGTKKIQNKK

Query:  G
        G
Subjt:  G

KAA0061339.1 gag/pol protein [Cucumis melo var. makuwa]

1.0e-63

67.16

Show/hide

Query:  MEQCPPSPSQNASQTVRDVYDRWTRANDKARVYILASMSGVLIKKHETMVTARQIMDSLREMFGQPSTQIWQEAIKHVYDARLNEGQSIREHVLDMIVHF
        +E+CP  P+ NA+QTVR+ Y+RW +AN+KAR YILAS+S VL KKHE+M+TAR+IMDSL+EMFGQ S QI  +A+K++Y+AR+NEG S+REHVL+++VHF
Subjt:  MEQCPPSPSQNASQTVRDVYDRWTRANDKARVYILASMSGVLIKKHETMVTARQIMDSLREMFGQPSTQIWQEAIKHVYDARLNEGQSIREHVLDMIVHF

Query:  NVAEMNGAVFDEKSQVYFILKSLSKSFLQFRSNMVMYKIEYKMTTLLNELQIFQSLMNNEGQKEGEANVAHS-RRFQKGSCSGTKFAPSFSGTKKIQNKK
        NVAEMNGAV DE SQV FIL+SL +SFLQFRSN VM KI Y +TTLLNELQ F+SLM  +GQK GEANVA S R+F +GS SGTK  PS SG KK + KK
Subjt:  NVAEMNGAVFDEKSQVYFILKSLSKSFLQFRSNMVMYKIEYKMTTLLNELQIFQSLMNNEGQKEGEANVAHS-RRFQKGSCSGTKFAPSFSGTKKIQNKK

Query:  G
        G
Subjt:  G

TYK14550.1 gag/pol protein [Cucumis melo var. makuwa]

1.0e-63

67.16

Show/hide

Query:  MEQCPPSPSQNASQTVRDVYDRWTRANDKARVYILASMSGVLIKKHETMVTARQIMDSLREMFGQPSTQIWQEAIKHVYDARLNEGQSIREHVLDMIVHF
        +E+CP  P+ NA++TVR+ Y+RW +AN+KAR YILAS+S VL KKHE+M+TAR+IMDSL+EMFGQ S QI  +A+K++Y+AR+NEG S+REHVL+M+VHF
Subjt:  MEQCPPSPSQNASQTVRDVYDRWTRANDKARVYILASMSGVLIKKHETMVTARQIMDSLREMFGQPSTQIWQEAIKHVYDARLNEGQSIREHVLDMIVHF

Query:  NVAEMNGAVFDEKSQVYFILKSLSKSFLQFRSNMVMYKIEYKMTTLLNELQIFQSLMNNEGQKEGEANVAHS-RRFQKGSCSGTKFAPSFSGTKKIQNKK
        NVAEMNGAV DE SQV FIL+SL +SFLQFRSN VM KI Y +TTLLNELQ F+SLM  +GQK GEANVA S R+F +GS SGTK  PS SG KK + KK
Subjt:  NVAEMNGAVFDEKSQVYFILKSLSKSFLQFRSNMVMYKIEYKMTTLLNELQIFQSLMNNEGQKEGEANVAHS-RRFQKGSCSGTKFAPSFSGTKKIQNKK

Query:  G
        G
Subjt:  G

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SMH8 Gag/pol protein

4.9e-64

67.16

Show/hide

Query:  MEQCPPSPSQNASQTVRDVYDRWTRANDKARVYILASMSGVLIKKHETMVTARQIMDSLREMFGQPSTQIWQEAIKHVYDARLNEGQSIREHVLDMIVHF
        +E+CP  P+ NA++TVR+ Y+RW +AN+KAR YILAS+S VL KKHE+M+TAR+IMDSL+EMFGQ S QI  +A+K++Y+AR+NEG S+REHVL+M+VHF
Subjt:  MEQCPPSPSQNASQTVRDVYDRWTRANDKARVYILASMSGVLIKKHETMVTARQIMDSLREMFGQPSTQIWQEAIKHVYDARLNEGQSIREHVLDMIVHF

Query:  NVAEMNGAVFDEKSQVYFILKSLSKSFLQFRSNMVMYKIEYKMTTLLNELQIFQSLMNNEGQKEGEANVAHS-RRFQKGSCSGTKFAPSFSGTKKIQNKK
        NVAEMNGAV DE SQV FIL+SL +SFLQFRSN VM KI Y +TTLLNELQ F+SLM  +GQK GEANVA S R+F +GS SGTK  PS SG KK + KK
Subjt:  NVAEMNGAVFDEKSQVYFILKSLSKSFLQFRSNMVMYKIEYKMTTLLNELQIFQSLMNNEGQKEGEANVAHS-RRFQKGSCSGTKFAPSFSGTKKIQNKK

Query:  G
        G
Subjt:  G

A0A5A7TU93 Gag/pol protein

4.9e-64

67.16

Show/hide

Query:  MEQCPPSPSQNASQTVRDVYDRWTRANDKARVYILASMSGVLIKKHETMVTARQIMDSLREMFGQPSTQIWQEAIKHVYDARLNEGQSIREHVLDMIVHF
        +E+CP  P+ NA++TVR+ Y+RW +AN+KAR YILAS+S VL KKHE+M+TAR+IMDSL+EMFGQ S QI  +A+K++Y+AR+NEG S+REHVL+M+VHF
Subjt:  MEQCPPSPSQNASQTVRDVYDRWTRANDKARVYILASMSGVLIKKHETMVTARQIMDSLREMFGQPSTQIWQEAIKHVYDARLNEGQSIREHVLDMIVHF

Query:  NVAEMNGAVFDEKSQVYFILKSLSKSFLQFRSNMVMYKIEYKMTTLLNELQIFQSLMNNEGQKEGEANVAHS-RRFQKGSCSGTKFAPSFSGTKKIQNKK
        NVAEMNGAV DE SQV FIL+SL +SFLQFRSN VM KI Y +TTLLNELQ F+SLM  +GQK GEANVA S R+F +GS SGTK  PS SG KK + KK
Subjt:  NVAEMNGAVFDEKSQVYFILKSLSKSFLQFRSNMVMYKIEYKMTTLLNELQIFQSLMNNEGQKEGEANVAHS-RRFQKGSCSGTKFAPSFSGTKKIQNKK

Query:  G
        G
Subjt:  G

A0A5A7TWB9 Gag/pol protein

4.9e-64

67.16

Show/hide

Query:  MEQCPPSPSQNASQTVRDVYDRWTRANDKARVYILASMSGVLIKKHETMVTARQIMDSLREMFGQPSTQIWQEAIKHVYDARLNEGQSIREHVLDMIVHF
        +E+CP  P+ NA++TVR+ Y+RW +AN+KAR YILAS+S VL KKHE+M+TAR+IMDSL+EMFGQ S QI  +A+K++Y+AR+NEG S+REHVL+M+VHF
Subjt:  MEQCPPSPSQNASQTVRDVYDRWTRANDKARVYILASMSGVLIKKHETMVTARQIMDSLREMFGQPSTQIWQEAIKHVYDARLNEGQSIREHVLDMIVHF

Query:  NVAEMNGAVFDEKSQVYFILKSLSKSFLQFRSNMVMYKIEYKMTTLLNELQIFQSLMNNEGQKEGEANVAHS-RRFQKGSCSGTKFAPSFSGTKKIQNKK
        NVAEMNGAV DE SQV FIL+SL +SFLQFRSN VM KI Y +TTLLNELQ F+SLM  +GQK GEANVA S R+F +GS SGTK  PS SG KK + KK
Subjt:  NVAEMNGAVFDEKSQVYFILKSLSKSFLQFRSNMVMYKIEYKMTTLLNELQIFQSLMNNEGQKEGEANVAHS-RRFQKGSCSGTKFAPSFSGTKKIQNKK

Query:  G
        G
Subjt:  G

A0A5A7V6N0 Gag/pol protein

4.9e-64

67.16

Show/hide

Query:  MEQCPPSPSQNASQTVRDVYDRWTRANDKARVYILASMSGVLIKKHETMVTARQIMDSLREMFGQPSTQIWQEAIKHVYDARLNEGQSIREHVLDMIVHF
        +E+CP  P+ NA+QTVR+ Y+RW +AN+KAR YILAS+S VL KKHE+M+TAR+IMDSL+EMFGQ S QI  +A+K++Y+AR+NEG S+REHVL+++VHF
Subjt:  MEQCPPSPSQNASQTVRDVYDRWTRANDKARVYILASMSGVLIKKHETMVTARQIMDSLREMFGQPSTQIWQEAIKHVYDARLNEGQSIREHVLDMIVHF

Query:  NVAEMNGAVFDEKSQVYFILKSLSKSFLQFRSNMVMYKIEYKMTTLLNELQIFQSLMNNEGQKEGEANVAHS-RRFQKGSCSGTKFAPSFSGTKKIQNKK
        NVAEMNGAV DE SQV FIL+SL +SFLQFRSN VM KI Y +TTLLNELQ F+SLM  +GQK GEANVA S R+F +GS SGTK  PS SG KK + KK
Subjt:  NVAEMNGAVFDEKSQVYFILKSLSKSFLQFRSNMVMYKIEYKMTTLLNELQIFQSLMNNEGQKEGEANVAHS-RRFQKGSCSGTKFAPSFSGTKKIQNKK

Query:  G
        G
Subjt:  G

A0A5D3CPJ6 Gag/pol protein

4.9e-64

67.16

Show/hide

Query:  MEQCPPSPSQNASQTVRDVYDRWTRANDKARVYILASMSGVLIKKHETMVTARQIMDSLREMFGQPSTQIWQEAIKHVYDARLNEGQSIREHVLDMIVHF
        +E+CP  P+ NA++TVR+ Y+RW +AN+KAR YILAS+S VL KKHE+M+TAR+IMDSL+EMFGQ S QI  +A+K++Y+AR+NEG S+REHVL+M+VHF
Subjt:  MEQCPPSPSQNASQTVRDVYDRWTRANDKARVYILASMSGVLIKKHETMVTARQIMDSLREMFGQPSTQIWQEAIKHVYDARLNEGQSIREHVLDMIVHF

Query:  NVAEMNGAVFDEKSQVYFILKSLSKSFLQFRSNMVMYKIEYKMTTLLNELQIFQSLMNNEGQKEGEANVAHS-RRFQKGSCSGTKFAPSFSGTKKIQNKK
        NVAEMNGAV DE SQV FIL+SL +SFLQFRSN VM KI Y +TTLLNELQ F+SLM  +GQK GEANVA S R+F +GS SGTK  PS SG KK + KK
Subjt:  NVAEMNGAVFDEKSQVYFILKSLSKSFLQFRSNMVMYKIEYKMTTLLNELQIFQSLMNNEGQKEGEANVAHS-RRFQKGSCSGTKFAPSFSGTKKIQNKK

Query:  G
        G
Subjt:  G

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGAGCAATGTCCTCCTTCTCCTTCTCAAAATGCATCCCAGACTGTCAGGGATGTATATGATCGTTGGACAAGGGCCAATGACAAGGCTCGCGTCTACATCTTGGCCAG
TATGTCTGGCGTACTGATCAAGAAACATGAGACCATGGTCACTGCACGTCAGATCATGGACTCTCTTCGAGAGATGTTTGGACAACCGTCCACTCAGATCTGGCAAGAGG
CAATTAAACACGTTTATGATGCCCGTTTGAATGAGGGTCAATCTATTAGAGAACATGTTCTCGACATGATAGTCCATTTCAACGTAGCAGAAATGAACGGAGCGGTCTTT
GATGAGAAGAGTCAAGTGTATTTTATCTTGAAATCTCTTTCGAAGAGCTTTCTTCAATTCCGTAGCAATATGGTTATGTACAAGATAGAGTACAAGATGACTACCCTCCT
TAATGAGTTGCAAATTTTCCAGTCTCTTATGAATAATGAGGGACAAAAAGAAGGAGAGGCAAATGTTGCCCATTCTAGGAGGTTTCAGAAGGGTTCATGCTCTGGAACCA
AGTTTGCACCTTCATTTTCTGGCACTAAGAAAATCCAGAATAAGAAAGGAGAGAAGAGGAAGGGTCCTACAGCTGCTGTCCATTATGTCCCCTCCCTAGCTCGTAAATGG
TATTGA

mRNA sequence

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Protein sequence

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MEQCPPSPSQNASQTVRDVYDRWTRANDKARVYILASMSGVLIKKHETMVTARQIMDSLREMFGQPSTQIWQEAIKHVYDARLNEGQSIREHVLDMIVHFNVAEMNGAVF
DEKSQVYFILKSLSKSFLQFRSNMVMYKIEYKMTTLLNELQIFQSLMNNEGQKEGEANVAHSRRFQKGSCSGTKFAPSFSGTKKIQNKKGEKRKGPTAAVHYVPSLARKW
Y

PI0005030 (gene) of Melon (PI 482460) v1 genome