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PI0005035 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0005035
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr11:15816451..15816915
RNA-Seq ExpressionPI0005035
SyntenyPI0005035
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032798.1 retrotransposon gag protein [Cucumis melo var. makuwa]4.0e-3556.03Show/hide
Query:  MLNVTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLMEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPSQATSSSNSQ----------------
        MLN+TTLLTSFVQG  +KV KCGVCGLVG+PNDKCP ++E+ N++R+YDPH NTYN GWRDNPNLRWGNDNQ+ +QA  +S++Q                
Subjt:  MLNVTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLMEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPSQATSSSNSQ----------------

Query:  --------------------GKGKLPVQPDHANVSAISLRS
                            GKGKLP QPDH NVSAISLRS
Subjt:  --------------------GKGKLPVQPDHANVSAISLRS

KAA0050529.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.4e-3556.34Show/hide
Query:  MLNVTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLMEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPSQATSSSNSQG---------------
        M N+TTLLTSFVQG  +KV KCGVC LVGHPNDKCP+++E+ N++RKYDPH NTYN GWRDNPNLRWGNDNQ+ +QA  +S++QG               
Subjt:  MLNVTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLMEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPSQATSSSNSQG---------------

Query:  ----------------------KGKLPVQPDHANVSAISLRS
                              KGKLP QPDHANVSAISLRS
Subjt:  ----------------------KGKLPVQPDHANVSAISLRS

KAA0061138.1 retrotransposon gag protein [Cucumis melo var. makuwa]3.1e-3557.04Show/hide
Query:  MLNVTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLMEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPSQATSSSNSQ----------------
        MLN+TTLLTSFVQG   KV KCGVCGLVGHPNDKC  ++E+ N++R+YDPHSNTYN+GWRDNPNLRWGNDNQ+ +QA S+S++Q                
Subjt:  MLNVTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLMEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPSQATSSSNSQ----------------

Query:  ---------------------GKGKLPVQPDHANVSAISLRS
                             GKGKLP QPD+ANVSAISLRS
Subjt:  ---------------------GKGKLPVQPDHANVSAISLRS

TYK07549.1 retrotransposon gag protein [Cucumis melo var. makuwa]8.1e-3657.75Show/hide
Query:  MLNVTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLMEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPSQATSSSNSQ----------------
        MLN+TTLLTSFVQG   KV KCGVCGLVGHPNDKCP ++E+ N++R+YDPHSNTYN+GWRDN NLRWGNDNQ+ +QA S+S++Q                
Subjt:  MLNVTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLMEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPSQATSSSNSQ----------------

Query:  ---------------------GKGKLPVQPDHANVSAISLRS
                             GKGKLP QPDHANVSAISLRS
Subjt:  ---------------------GKGKLPVQPDHANVSAISLRS

XP_008465649.1 PREDICTED: uncharacterized protein LOC103503291, partial [Cucumis melo]3.1e-3555.63Show/hide
Query:  MLNVTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLMEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPSQATSSSNSQ----------------
        MLN+TTLLTSFVQG ++KV KCGVCGLVG+PNDKCP ++E+ N++R+YDPH NTYN GWRDNPNLRWGNDNQ+ +QA  +S++Q                
Subjt:  MLNVTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLMEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPSQATSSSNSQ----------------

Query:  ---------------------GKGKLPVQPDHANVSAISLRS
                             GKGKLP QPDH NVSAISLRS
Subjt:  ---------------------GKGKLPVQPDHANVSAISLRS

TrEMBL top hitse value%identityAlignment
A0A1S3CQU8 uncharacterized protein LOC1035032911.5e-3555.63Show/hide
Query:  MLNVTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLMEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPSQATSSSNSQ----------------
        MLN+TTLLTSFVQG ++KV KCGVCGLVG+PNDKCP ++E+ N++R+YDPH NTYN GWRDNPNLRWGNDNQ+ +QA  +S++Q                
Subjt:  MLNVTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLMEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPSQATSSSNSQ----------------

Query:  ---------------------GKGKLPVQPDHANVSAISLRS
                             GKGKLP QPDH NVSAISLRS
Subjt:  ---------------------GKGKLPVQPDHANVSAISLRS

A0A5A7SQH8 Retrotransposon gag protein2.0e-3556.03Show/hide
Query:  MLNVTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLMEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPSQATSSSNSQ----------------
        MLN+TTLLTSFVQG  +KV KCGVCGLVG+PNDKCP ++E+ N++R+YDPH NTYN GWRDNPNLRWGNDNQ+ +QA  +S++Q                
Subjt:  MLNVTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLMEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPSQATSSSNSQ----------------

Query:  --------------------GKGKLPVQPDHANVSAISLRS
                            GKGKLP QPDH NVSAISLRS
Subjt:  --------------------GKGKLPVQPDHANVSAISLRS

A0A5A7UAL2 Retrotransposon gag protein1.1e-3556.34Show/hide
Query:  MLNVTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLMEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPSQATSSSNSQG---------------
        M N+TTLLTSFVQG  +KV KCGVC LVGHPNDKCP+++E+ N++RKYDPH NTYN GWRDNPNLRWGNDNQ+ +QA  +S++QG               
Subjt:  MLNVTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLMEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPSQATSSSNSQG---------------

Query:  ----------------------KGKLPVQPDHANVSAISLRS
                              KGKLP QPDHANVSAISLRS
Subjt:  ----------------------KGKLPVQPDHANVSAISLRS

A0A5A7V0Q7 Retrotransposon gag protein1.5e-3557.04Show/hide
Query:  MLNVTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLMEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPSQATSSSNSQ----------------
        MLN+TTLLTSFVQG   KV KCGVCGLVGHPNDKC  ++E+ N++R+YDPHSNTYN+GWRDNPNLRWGNDNQ+ +QA S+S++Q                
Subjt:  MLNVTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLMEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPSQATSSSNSQ----------------

Query:  ---------------------GKGKLPVQPDHANVSAISLRS
                             GKGKLP QPD+ANVSAISLRS
Subjt:  ---------------------GKGKLPVQPDHANVSAISLRS

A0A5D3CB46 Retrotransposon gag protein3.9e-3657.75Show/hide
Query:  MLNVTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLMEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPSQATSSSNSQ----------------
        MLN+TTLLTSFVQG   KV KCGVCGLVGHPNDKCP ++E+ N++R+YDPHSNTYN+GWRDN NLRWGNDNQ+ +QA S+S++Q                
Subjt:  MLNVTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLMEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPSQATSSSNSQ----------------

Query:  ---------------------GKGKLPVQPDHANVSAISLRS
                             GKGKLP QPDHANVSAISLRS
Subjt:  ---------------------GKGKLPVQPDHANVSAISLRS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTAATGTGACTACCTTACTAACTTCCTTTGTGCAAGGTGGATCCGTTAAAGTTGCAAAGTGCGGGGTGTGCGGTCTAGTCGGACATCCTAATGACAAGTGCCCTGA
CTTAATGGAAGAGGCAAATGTTATTAGGAAGTACGATCCTCATAGCAACACTTACAACGCCGGTTGGAGAGACAACCCTAATCTGAGATGGGGAAACGACAACCAAAGAC
CCTCGCAAGCAACCTCCTCTTCAAACAGTCAAGGTAAAGGCAAACTTCCGGTTCAGCCTGATCATGCCAACGTAAGTGCCATCTCGCTTAGAAGCGTAAGATTCTGGAAA
CCCCTTCAAGCAAAGAAAAGGTAA
mRNA sequenceShow/hide mRNA sequence
ATGCTTAATGTGACTACCTTACTAACTTCCTTTGTGCAAGGTGGATCCGTTAAAGTTGCAAAGTGCGGGGTGTGCGGTCTAGTCGGACATCCTAATGACAAGTGCCCTGA
CTTAATGGAAGAGGCAAATGTTATTAGGAAGTACGATCCTCATAGCAACACTTACAACGCCGGTTGGAGAGACAACCCTAATCTGAGATGGGGAAACGACAACCAAAGAC
CCTCGCAAGCAACCTCCTCTTCAAACAGTCAAGGTAAAGGCAAACTTCCGGTTCAGCCTGATCATGCCAACGTAAGTGCCATCTCGCTTAGAAGCGTAAGATTCTGGAAA
CCCCTTCAAGCAAAGAAAAGGTAA
Protein sequenceShow/hide protein sequence
MLNVTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLMEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPSQATSSSNSQGKGKLPVQPDHANVSAISLRSVRFWK
PLQAKKR