CuGenDBv2

Gene ID	PI0005037
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	39S ribosomal protein L53
Genome location	chr04:29457638..29459537
RNA-Seq Expression	PI0005037
Synteny	PI0005037
Gene Ontology terms	GO:0005762 - mitochondrial large ribosomal subunit (cellular component)
InterPro domains	IPR019716 - Ribosomal protein L53, mitochondrial

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004147839.1 uncharacterized protein LOC101217531 [Cucumis sativus]

5.5e-62

96.06

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Query:  MLKFLSKVKIEFNALDPRLACCMEFLAQCNATKAKESNPACQLIVKRRTDDYPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE
        MLKFLSKVKIEFNALDPRLACCMEFLAQCNA+KAKESNPACQLIVKRRTDD+PPQIAVTFVNGVEEVFDATSTPAQTIR+MILEKGQLLETEQMFREAGE
Subjt:  MLKFLSKVKIEFNALDPRLACCMEFLAQCNATKAKESNPACQLIVKRRTDDYPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE

Query:  AWPVIIPDEELNQPFTSIKPRKAEDKQ
        AWPVIIPDEEL QPFT IKPRKAEDKQ
Subjt:  AWPVIIPDEELNQPFTSIKPRKAEDKQ

XP_008466507.1 PREDICTED: uncharacterized protein LOC103503897 [Cucumis melo]

2.0e-59

94.4

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Query:  MLKFLSKVKIEFNALDPRLACCMEFLAQCNATKAKESNPACQLIVKRRTDDYPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE
        MLKFLSKVKIEFNALDPRLACCMEFLAQCNATK+KESNPACQLIVKRRTDD+PPQIAVTFVNGVEEVFDATS  AQTIRNMILEKGQLLETEQMFREAGE
Subjt:  MLKFLSKVKIEFNALDPRLACCMEFLAQCNATKAKESNPACQLIVKRRTDDYPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE

Query:  AWPVIIPDEELNQPFTSIKPRKAED
        AWPVIIP+EEL QP TSIKPRKAED
Subjt:  AWPVIIPDEELNQPFTSIKPRKAED

XP_022139291.1 uncharacterized protein LOC111010210 [Momordica charantia]

1.7e-58

92.13

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Query:  MLKFLSKVKIEFNALDPRLACCMEFLAQCNATKAKESNPACQLIVKRRTDDYPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE
        MLKFLSKVKIEFNALDPRLA CMEFLAQCNA KAKESNPACQLIVKRRTDD PPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE
Subjt:  MLKFLSKVKIEFNALDPRLACCMEFLAQCNATKAKESNPACQLIVKRRTDDYPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE

Query:  AWPVIIPDEELNQPFTSIKPRKAEDKQ
         WP++IP+EEL QP  SIKPRKAEDKQ
Subjt:  AWPVIIPDEELNQPFTSIKPRKAEDKQ

XP_022974805.1 uncharacterized protein LOC111473560 isoform X1 [Cucurbita maxima]

3.3e-59

93.7

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Query:  MLKFLSKVKIEFNALDPRLACCMEFLAQCNATKAKESNPACQLIVKRRTDDYPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE
        MLKFLSKVKIEFNALDPRL  CMEFLAQCNA KAKESNPACQLIVKRRTDD+PPQI VTFVNGVEEVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE
Subjt:  MLKFLSKVKIEFNALDPRLACCMEFLAQCNATKAKESNPACQLIVKRRTDDYPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE

Query:  AWPVIIPDEELNQPFTSIKPRKAEDKQ
         WPVIIPDEELNQP  SIKPRKAEDKQ
Subjt:  AWPVIIPDEELNQPFTSIKPRKAEDKQ

XP_038896893.1 uncharacterized protein LOC120085105 [Benincasa hispida]

1.5e-59

93.7

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Query:  MLKFLSKVKIEFNALDPRLACCMEFLAQCNATKAKESNPACQLIVKRRTDDYPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE
        MLKFLSKVKIEFNALDPRLA CMEFLAQCNA KAKESNPACQLIVKRRTDD+PPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE
Subjt:  MLKFLSKVKIEFNALDPRLACCMEFLAQCNATKAKESNPACQLIVKRRTDDYPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE

Query:  AWPVIIPDEELNQPFTSIKPRKAEDKQ
         WPVIIPDEEL QP + IKPRKAEDKQ
Subjt:  AWPVIIPDEELNQPFTSIKPRKAEDKQ

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LGG5 Uncharacterized protein

2.7e-62

96.06

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Query:  MLKFLSKVKIEFNALDPRLACCMEFLAQCNATKAKESNPACQLIVKRRTDDYPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE
        MLKFLSKVKIEFNALDPRLACCMEFLAQCNA+KAKESNPACQLIVKRRTDD+PPQIAVTFVNGVEEVFDATSTPAQTIR+MILEKGQLLETEQMFREAGE
Subjt:  MLKFLSKVKIEFNALDPRLACCMEFLAQCNATKAKESNPACQLIVKRRTDDYPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE

Query:  AWPVIIPDEELNQPFTSIKPRKAEDKQ
        AWPVIIPDEEL QPFT IKPRKAEDKQ
Subjt:  AWPVIIPDEELNQPFTSIKPRKAEDKQ

A0A1S3CRE8 uncharacterized protein LOC103503897

9.5e-60

94.4

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Query:  MLKFLSKVKIEFNALDPRLACCMEFLAQCNATKAKESNPACQLIVKRRTDDYPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE
        MLKFLSKVKIEFNALDPRLACCMEFLAQCNATK+KESNPACQLIVKRRTDD+PPQIAVTFVNGVEEVFDATS  AQTIRNMILEKGQLLETEQMFREAGE
Subjt:  MLKFLSKVKIEFNALDPRLACCMEFLAQCNATKAKESNPACQLIVKRRTDDYPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE

Query:  AWPVIIPDEELNQPFTSIKPRKAED
        AWPVIIP+EEL QP TSIKPRKAED
Subjt:  AWPVIIPDEELNQPFTSIKPRKAED

A0A6J1CC86 uncharacterized protein LOC111010210

8.0e-59

92.13

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Query:  MLKFLSKVKIEFNALDPRLACCMEFLAQCNATKAKESNPACQLIVKRRTDDYPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE
        MLKFLSKVKIEFNALDPRLA CMEFLAQCNA KAKESNPACQLIVKRRTDD PPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE
Subjt:  MLKFLSKVKIEFNALDPRLACCMEFLAQCNATKAKESNPACQLIVKRRTDDYPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE

Query:  AWPVIIPDEELNQPFTSIKPRKAEDKQ
         WP++IP+EEL QP  SIKPRKAEDKQ
Subjt:  AWPVIIPDEELNQPFTSIKPRKAEDKQ

A0A6J1IEW0 uncharacterized protein LOC111473560 isoform X1

1.6e-59

93.7

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Query:  MLKFLSKVKIEFNALDPRLACCMEFLAQCNATKAKESNPACQLIVKRRTDDYPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE
        MLKFLSKVKIEFNALDPRL  CMEFLAQCNA KAKESNPACQLIVKRRTDD+PPQI VTFVNGVEEVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE
Subjt:  MLKFLSKVKIEFNALDPRLACCMEFLAQCNATKAKESNPACQLIVKRRTDDYPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE

Query:  AWPVIIPDEELNQPFTSIKPRKAEDKQ
         WPVIIPDEELNQP  SIKPRKAEDKQ
Subjt:  AWPVIIPDEELNQPFTSIKPRKAEDKQ

A0A6J1IZE5 uncharacterized protein LOC111481279

2.3e-58

92.91

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Query:  MLKFLSKVKIEFNALDPRLACCMEFLAQCNATKAKESNPACQLIVKRRTDDYPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE
        MLKFLSKVKIEFNALDPRLA CMEFLAQCNA KAKESNPACQLIVKRRTDD+PPQIAVTFVNGVEEVFDATSTPAQTIR  ILEKGQLLETEQMFREAGE
Subjt:  MLKFLSKVKIEFNALDPRLACCMEFLAQCNATKAKESNPACQLIVKRRTDDYPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE

Query:  AWPVIIPDEELNQPFTSIKPRKAEDKQ
         WPVIIPDEELN P  SIKPRKAEDKQ
Subjt:  AWPVIIPDEELNQPFTSIKPRKAEDKQ

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G39600.1 CONTAINS InterPro DOMAIN/s: Ribosomal protein L53, mitochondrial (InterPro:IPR019716); Has 50 Blast hits to 50 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).

6.5e-53

78.74

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Query:  MLKFLSKVKIEFNALDPRLACCMEFLAQCNATKAKESNPACQLIVKRRTDDYPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE
        MLKFLSKV+IEFN LDPRLA C+EFLAQCNA KAKESNP CQ++VKRRTD+ PPQI VTFVNGVEE FDA +T AQ+IR MIL+KGQ LETEQMFREAGE
Subjt:  MLKFLSKVKIEFNALDPRLACCMEFLAQCNATKAKESNPACQLIVKRRTDDYPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE

Query:  AWPVIIPDEELNQPFTSIKPRKAEDKQ
         WPVIIPDEEL Q    +KPRKAEDK+
Subjt:  AWPVIIPDEELNQPFTSIKPRKAEDKQ

Sequences

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CDS sequence

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ATGTTGAAGTTCCTATCTAAAGTGAAGATCGAATTCAATGCTCTCGATCCACGCTTAGCATGTTGTATGGAATTCTTGGCACAGTGTAATGCTACCAAGGCGAAGGAATC
CAACCCCGCTTGCCAATTGATCGTCAAGCGCCGAACAGACGACTACCCTCCCCAGATCGCCGTCACCTTCGTCAATGGAGTGGAAGAGGTTTTTGACGCTACCTCTACTC
CTGCTCAAACAATCAGGAATATGATTCTTGAAAAGGGTCAACTCCTTGAGACCGAGCAAATGTTCCGAGAAGCTGGGGAAGCTTGGCCAGTTATCATTCCCGATGAGGAG
CTCAACCAACCCTTTACCAGTATCAAGCCTAGAAAAGCGGAAGACAAGCAGTAA

mRNA sequence

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Protein sequence

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MLKFLSKVKIEFNALDPRLACCMEFLAQCNATKAKESNPACQLIVKRRTDDYPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGQLLETEQMFREAGEAWPVIIPDEE
LNQPFTSIKPRKAEDKQ

PI0005037 (gene) of Melon (PI 482460) v1 genome