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PI0005084 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0005084
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionDNA-directed RNA polymerase
Genome locationchr07:7433813..7436825
RNA-Seq ExpressionPI0005084
SyntenyPI0005084
Gene Ontology termsGO:0006390 - mitochondrial transcription (biological process)
GO:0034245 - mitochondrial DNA-directed RNA polymerase complex (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
InterPro domainsIPR002092 - DNA-directed RNA polymerase, phage-type
IPR029262 - DNA-directed RNA polymerase, N-terminal
IPR037159 - DNA-directed RNA polymerase, N-terminal domain superfamily
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022149021.1 DNA-directed RNA polymerase 1B, mitochondrial [Momordica charantia]6.7e-2879.52Show/hide
Query:  MKSLFLGWFKPLRDAIVAVQEFCKDKKCRSSHAPYFDLLPAYKMTVITMHKLMGLLMSGTVGNGSVRVVQAASEIGEAIEHEV
        +KSLFLGWF+PLRDAI A QE+CKDKK R SHAPYFDL+PA  M VITMHKLMGLLM+ + GNGSVRVVQAA +IGEAIEHEV
Subjt:  MKSLFLGWFKPLRDAIVAVQEFCKDKKCRSSHAPYFDLLPAYKMTVITMHKLMGLLMSGTVGNGSVRVVQAASEIGEAIEHEV

XP_022944908.1 DNA-directed RNA polymerase 1B, mitochondrial-like [Cucurbita moschata]2.2e-2680.72Show/hide
Query:  MKSLFLGWFKPLRDAIVAVQEFCKDKKCRSSHAPYFDLLPAYKMTVITMHKLMGLLMSGTVGNGSVRVVQAASEIGEAIEHEV
        MKSLFLGWF+PLRDAI A QEFCK KK R SHAPYFDLLPA  M VITMHKLMGLLM+ + GN SVRVVQAA +IGEAIEHEV
Subjt:  MKSLFLGWFKPLRDAIVAVQEFCKDKKCRSSHAPYFDLLPAYKMTVITMHKLMGLLMSGTVGNGSVRVVQAASEIGEAIEHEV

XP_022944910.1 DNA-directed RNA polymerase 1B, mitochondrial-like [Cucurbita moschata]6.3e-2679.52Show/hide
Query:  MKSLFLGWFKPLRDAIVAVQEFCKDKKCRSSHAPYFDLLPAYKMTVITMHKLMGLLMSGTVGNGSVRVVQAASEIGEAIEHEV
        +KSLFLGWF+PLRDAI A QEFCK KK R SHAPYFDLLPA  M VITMHKLMGLLM+ + GN SVRVVQAA +IGEAIEHEV
Subjt:  MKSLFLGWFKPLRDAIVAVQEFCKDKKCRSSHAPYFDLLPAYKMTVITMHKLMGLLMSGTVGNGSVRVVQAASEIGEAIEHEV

XP_022967967.1 DNA-directed RNA polymerase 1B, mitochondrial-like [Cucurbita maxima]3.3e-2780.72Show/hide
Query:  MKSLFLGWFKPLRDAIVAVQEFCKDKKCRSSHAPYFDLLPAYKMTVITMHKLMGLLMSGTVGNGSVRVVQAASEIGEAIEHEV
        MKSLFLGWF+PLRDAI A QEF KDKK R SHAPYFDLLPA  M VITMHKLMGLLM+ + GN SVRVVQAA +IGEAIEHEV
Subjt:  MKSLFLGWFKPLRDAIVAVQEFCKDKKCRSSHAPYFDLLPAYKMTVITMHKLMGLLMSGTVGNGSVRVVQAASEIGEAIEHEV

XP_038892390.1 DNA-directed RNA polymerase 1B, mitochondrial [Benincasa hispida]2.7e-2983.13Show/hide
Query:  MKSLFLGWFKPLRDAIVAVQEFCKDKKCRSSHAPYFDLLPAYKMTVITMHKLMGLLMSGTVGNGSVRVVQAASEIGEAIEHEV
        MKSLFLGWF+PLRDAI A QEFCKDKK R SHAPYFDLLPA  M V+TMHKLMGLLMS TVGNG VRVVQAA +IGEAIE EV
Subjt:  MKSLFLGWFKPLRDAIVAVQEFCKDKKCRSSHAPYFDLLPAYKMTVITMHKLMGLLMSGTVGNGSVRVVQAASEIGEAIEHEV

TrEMBL top hitse value%identityAlignment
A0A6J1D747 DNA-directed RNA polymerase3.2e-2879.52Show/hide
Query:  MKSLFLGWFKPLRDAIVAVQEFCKDKKCRSSHAPYFDLLPAYKMTVITMHKLMGLLMSGTVGNGSVRVVQAASEIGEAIEHEV
        +KSLFLGWF+PLRDAI A QE+CKDKK R SHAPYFDL+PA  M VITMHKLMGLLM+ + GNGSVRVVQAA +IGEAIEHEV
Subjt:  MKSLFLGWFKPLRDAIVAVQEFCKDKKCRSSHAPYFDLLPAYKMTVITMHKLMGLLMSGTVGNGSVRVVQAASEIGEAIEHEV

A0A6J1FZC4 DNA-directed RNA polymerase1.0e-2680.72Show/hide
Query:  MKSLFLGWFKPLRDAIVAVQEFCKDKKCRSSHAPYFDLLPAYKMTVITMHKLMGLLMSGTVGNGSVRVVQAASEIGEAIEHEV
        MKSLFLGWF+PLRDAI A QEFCK KK R SHAPYFDLLPA  M VITMHKLMGLLM+ + GN SVRVVQAA +IGEAIEHEV
Subjt:  MKSLFLGWFKPLRDAIVAVQEFCKDKKCRSSHAPYFDLLPAYKMTVITMHKLMGLLMSGTVGNGSVRVVQAASEIGEAIEHEV

A0A6J1FZD9 DNA-directed RNA polymerase3.0e-2679.52Show/hide
Query:  MKSLFLGWFKPLRDAIVAVQEFCKDKKCRSSHAPYFDLLPAYKMTVITMHKLMGLLMSGTVGNGSVRVVQAASEIGEAIEHEV
        +KSLFLGWF+PLRDAI A QEFCK KK R SHAPYFDLLPA  M VITMHKLMGLLM+ + GN SVRVVQAA +IGEAIEHEV
Subjt:  MKSLFLGWFKPLRDAIVAVQEFCKDKKCRSSHAPYFDLLPAYKMTVITMHKLMGLLMSGTVGNGSVRVVQAASEIGEAIEHEV

A0A6J1HS83 DNA-directed RNA polymerase1.6e-2780.72Show/hide
Query:  MKSLFLGWFKPLRDAIVAVQEFCKDKKCRSSHAPYFDLLPAYKMTVITMHKLMGLLMSGTVGNGSVRVVQAASEIGEAIEHEV
        MKSLFLGWF+PLRDAI A QEF KDKK R SHAPYFDLLPA  M VITMHKLMGLLM+ + GN SVRVVQAA +IGEAIEHEV
Subjt:  MKSLFLGWFKPLRDAIVAVQEFCKDKKCRSSHAPYFDLLPAYKMTVITMHKLMGLLMSGTVGNGSVRVVQAASEIGEAIEHEV

A0A6P8CTR9 DNA-directed RNA polymerase3.4e-2574.7Show/hide
Query:  MKSLFLGWFKPLRDAIVAVQEFCKDKKCRSSHAPYFDLLPAYKMTVITMHKLMGLLMSGTVGNGSVRVVQAASEIGEAIEHEV
        MKSLFLGWF+PLRDAI A QE CK+KK + S+APY+D LPA  M VITMHKLMGLLM+   GNGS RVVQAA +IGEAIEHEV
Subjt:  MKSLFLGWFKPLRDAIVAVQEFCKDKKCRSSHAPYFDLLPAYKMTVITMHKLMGLLMSGTVGNGSVRVVQAASEIGEAIEHEV

SwissProt top hitse value%identityAlignment
P92969 DNA-directed RNA polymerase 1, mitochondrial2.9e-1856.63Show/hide
Query:  MKSLFLGWFKPLRDAIVAVQEFCKDKKCRSSHAPYFDLLPAYKMTVITMHKLMGLLMSGTVGNGSVRVVQAASEIGEAIEHEV
        MKSLFLGWF+P+R+AI    +  K KK +  +AP+ + LPA KM VITMHK+MGLLM+   G G V++V AA++IGEA+E EV
Subjt:  MKSLFLGWFKPLRDAIVAVQEFCKDKKCRSSHAPYFDLLPAYKMTVITMHKLMGLLMSGTVGNGSVRVVQAASEIGEAIEHEV

Q8L6J3 DNA-directed RNA polymerase 2B, chloroplastic/mitochondrial1.0e-1860.24Show/hide
Query:  MKSLFLGWFKPLRDAIVAVQEFCKDKKCRSSHAPYFDLLPAYKMTVITMHKLMGLLMSGTVGNGSVRVVQAASEIGEAIEHEV
        +KSLFLGWF+PLRD I   QE C   K ++++A Y   LPA  M VITMHKLMGLLM+G   +G+ RVVQAA  IG+AIE EV
Subjt:  MKSLFLGWFKPLRDAIVAVQEFCKDKKCRSSHAPYFDLLPAYKMTVITMHKLMGLLMSGTVGNGSVRVVQAASEIGEAIEHEV

Q8L6J5 DNA-directed RNA polymerase 1B, mitochondrial7.2e-2571.95Show/hide
Query:  MKSLFLGWFKPLRDAIVAVQEFCKDKKCRSSHAPYFDLLPAYKMTVITMHKLMGLLMSGTVGNGSVRVVQAASEIGEAIEHE
        MKSLFLGWF+PLRDAI A Q+ C + K R ++AP+FD LPA  M VITMHKLMGLLM+G  G GS RVVQAAS IGEAIEHE
Subjt:  MKSLFLGWFKPLRDAIVAVQEFCKDKKCRSSHAPYFDLLPAYKMTVITMHKLMGLLMSGTVGNGSVRVVQAASEIGEAIEHE

Q8VWF8 DNA-directed RNA polymerase 2, chloroplastic/mitochondrial2.0e-1961.45Show/hide
Query:  MKSLFLGWFKPLRDAIVAVQEFCKDKKCRSSHAPYFDLLPAYKMTVITMHKLMGLLMSGTVGNGSVRVVQAASEIGEAIEHEV
        +KSLFLGWF+PLRD I   QE C   K ++++A YF  LPA  M VITMHKLMGLLM+G   +G+ RVVQAA  IG+AIE EV
Subjt:  MKSLFLGWFKPLRDAIVAVQEFCKDKKCRSSHAPYFDLLPAYKMTVITMHKLMGLLMSGTVGNGSVRVVQAASEIGEAIEHEV

Q93Y94 DNA-directed RNA polymerase 1, mitochondrial4.2e-2571.95Show/hide
Query:  MKSLFLGWFKPLRDAIVAVQEFCKDKKCRSSHAPYFDLLPAYKMTVITMHKLMGLLMSGTVGNGSVRVVQAASEIGEAIEHE
        MKSLFLGWF+PLRDAI A Q+ C + K R ++AP+FD LPA  M VITMHKLMGLLM+G  G GS RVVQAAS IGEAIEHE
Subjt:  MKSLFLGWFKPLRDAIVAVQEFCKDKKCRSSHAPYFDLLPAYKMTVITMHKLMGLLMSGTVGNGSVRVVQAASEIGEAIEHE

Arabidopsis top hitse value%identityAlignment
AT1G68990.1 male gametophyte defective 32.1e-1956.63Show/hide
Query:  MKSLFLGWFKPLRDAIVAVQEFCKDKKCRSSHAPYFDLLPAYKMTVITMHKLMGLLMSGTVGNGSVRVVQAASEIGEAIEHEV
        MKSLFLGWF+P+R+AI    +  K KK +  +AP+ + LPA KM VITMHK+MGLLM+   G G V++V AA++IGEA+E EV
Subjt:  MKSLFLGWFKPLRDAIVAVQEFCKDKKCRSSHAPYFDLLPAYKMTVITMHKLMGLLMSGTVGNGSVRVVQAASEIGEAIEHEV

AT1G68990.2 male gametophyte defective 32.1e-1956.63Show/hide
Query:  MKSLFLGWFKPLRDAIVAVQEFCKDKKCRSSHAPYFDLLPAYKMTVITMHKLMGLLMSGTVGNGSVRVVQAASEIGEAIEHEV
        MKSLFLGWF+P+R+AI    +  K KK +  +AP+ + LPA KM VITMHK+MGLLM+   G G V++V AA++IGEA+E EV
Subjt:  MKSLFLGWFKPLRDAIVAVQEFCKDKKCRSSHAPYFDLLPAYKMTVITMHKLMGLLMSGTVGNGSVRVVQAASEIGEAIEHEV

AT2G24120.2 DNA/RNA polymerases superfamily protein8.7e-1855.29Show/hide
Query:  MKSLFLGWFKPLRDAIVAVQEFCKD--KKCRSSHAPYFDLLPAYKMTVITMHKLMGLLMSGTVGNGSVRVVQAASEIGEAIEHEV
        +K +FLGWF+PL+D I   Q+  K+  KK R+++AP+ +LLPA KM VI MHK+MGL+MSG   +G ++VVQAA  IG AIE EV
Subjt:  MKSLFLGWFKPLRDAIVAVQEFCKD--KKCRSSHAPYFDLLPAYKMTVITMHKLMGLLMSGTVGNGSVRVVQAASEIGEAIEHEV

AT5G15700.1 DNA/RNA polymerases superfamily protein3.6e-1957.83Show/hide
Query:  MKSLFLGWFKPLRDAIVAVQEFCKDKKCRSSHAPYFDLLPAYKMTVITMHKLMGLLMSGTVGNGSVRVVQAASEIGEAIEHEV
        +KSLFLGWF+PLRDAI   QE  +  K ++++A Y D LPA K++VITMHKLMG LM+G   NG V+VV AA  +G+AIE E+
Subjt:  MKSLFLGWFKPLRDAIVAVQEFCKDKKCRSSHAPYFDLLPAYKMTVITMHKLMGLLMSGTVGNGSVRVVQAASEIGEAIEHEV

AT5G15700.2 DNA/RNA polymerases superfamily protein3.6e-1957.83Show/hide
Query:  MKSLFLGWFKPLRDAIVAVQEFCKDKKCRSSHAPYFDLLPAYKMTVITMHKLMGLLMSGTVGNGSVRVVQAASEIGEAIEHEV
        +KSLFLGWF+PLRDAI   QE  +  K ++++A Y D LPA K++VITMHKLMG LM+G   NG V+VV AA  +G+AIE E+
Subjt:  MKSLFLGWFKPLRDAIVAVQEFCKDKKCRSSHAPYFDLLPAYKMTVITMHKLMGLLMSGTVGNGSVRVVQAASEIGEAIEHEV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGTCTTTATTCCTTGGTTGGTTCAAACCCTTGCGTGATGCAATTGTTGCAGTGCAAGAATTTTGCAAGGATAAGAAGTGTAGATCGAGTCATGCTCCTTATTTCGA
TCTTCTACCGGCATATAAGATGACAGTGATTACAATGCATAAGTTAATGGGGTTGCTGATGAGTGGTACTGTAGGAAACGGTAGTGTCAGGGTAGTCCAAGCTGCTTCTG
AGATAGGAGAAGCAATTGAACATGAGGTTGGAAAACTAGCAAGAGATATGATGTTGTTGAATGTAATTCACTTGTTCGCTGAGGCCCGAGGAAAACTCTATTTTTTTCTC
AGGCTAGGCACATGGTCGGTTCGTATATGCCTATGCTGGTGCCTCCTCTTAATTGAACAGGGTATGACAACGGGGCATACTTATTCCTACCATTATATGTTATGCGAATA
CATGGGGCAAAACAGCAACGTGAAGCAGTTAAAAGGGCTCCAAGAAAGCAACTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAGTCTTTATTCCTTGGTTGGTTCAAACCCTTGCGTGATGCAATTGTTGCAGTGCAAGAATTTTGCAAGGATAAGAAGTGTAGATCGAGTCATGCTCCTTATTTCGA
TCTTCTACCGGCATATAAGATGACAGTGATTACAATGCATAAGTTAATGGGGTTGCTGATGAGTGGTACTGTAGGAAACGGTAGTGTCAGGGTAGTCCAAGCTGCTTCTG
AGATAGGAGAAGCAATTGAACATGAGGTTGGAAAACTAGCAAGAGATATGATGTTGTTGAATGTAATTCACTTGTTCGCTGAGGCCCGAGGAAAACTCTATTTTTTTCTC
AGGCTAGGCACATGGTCGGTTCGTATATGCCTATGCTGGTGCCTCCTCTTAATTGAACAGGGTATGACAACGGGGCATACTTATTCCTACCATTATATGTTATGCGAATA
CATGGGGCAAAACAGCAACGTGAAGCAGTTAAAAGGGCTCCAAGAAAGCAACTAGAGCCTATTTTTAAGGTTTGAGTTGGTTTGTTATCCTAGTTTAATGATTTTTATAC
ATACCTTTGATTTTTCGTAAACTCTTTCCCATGTACCATGTTGAAACATTAATATCTCTAGGGACAATTATAAGATATTACCACTTTATTGAAGAAAAGTTTCTCTTTGA
TTTAGTGTTTCATGGCGTTCACCTTTGAAGTTGTGATGCCATCAGAAGGAGCTTTTAAGAGTTGGCCCTTAGGAAAAAAATTTAACTTGAAGTTTCTTTATGAGTTCCAG
TTGCAGAAGGATTAAAAATTTTCCTCATTCCTTATAAGATCTTATAACTTGTCCACACCACCAGCATACCTGGTGGCGTGGACAAGTTATCTTATAAGGAACGAATATCA
TTTACCGAGAACCATTTGGATGAGATTTTTTATTCTGTAGACAGGCCTCTAGAAGGATGCGG
Protein sequenceShow/hide protein sequence
MKSLFLGWFKPLRDAIVAVQEFCKDKKCRSSHAPYFDLLPAYKMTVITMHKLMGLLMSGTVGNGSVRVVQAASEIGEAIEHEVGKLARDMMLLNVIHLFAEARGKLYFFL
RLGTWSVRICLCWCLLLIEQGMTTGHTYSYHYMLCEYMGQNSNVKQLKGLQESN