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PI0005092 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0005092
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRibonuclease H
Genome locationchr07:8105708..8107964
RNA-Seq ExpressionPI0005092
SyntenyPI0005092
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022143495.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111013372 [Momordica charantia]6.0e-1741.81Show/hide
Query:  IEGFCPQYTTYNPFYNAHVDRLTFSFSNKSEPVPLASQTSFRMVNED--PSKVTVTIPNLDDPESHISQSNNLYEFELDVAEELLAGEFSKVSLERKPLT
        +E  CP     N  Y  + + LT  F   ++   L    SFRM+ ++   SK+ +T+ N     SH  +  N+ E ++ VAE  +A E S  +L+ K LT
Subjt:  IEGFCPQYTTYNPFYNAHVDRLTFSFSNKSEPVPLASQTSFRMVNED--PSKVTVTIPNLDDPESHISQSNNLYEFELDVAEELLAGEFSKVSLERKPLT

Query:  IFYKEKLNTTTSNPKPITINVPSSFEYTSSKAVPWNYEYKVT----VESGSVLVDNVNEVRGITRSGRCYTLEELLK
        IFY EK +    + KPITI VP+ FEY SSKAVPW YE KVT    V S  + VDN+  V G+T +GRCYT + LLK
Subjt:  IFYKEKLNTTTSNPKPITINVPSSFEYTSSKAVPWNYEYKVT----VESGSVLVDNVNEVRGITRSGRCYTLEELLK

XP_022147189.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111016200 [Momordica charantia]2.5e-1840.68Show/hide
Query:  IEGFCPQYTTYNPFYNAHVDRLTFSFSNKSEPVPLASQTSFRMVNED--PSKVTVTIPNLDDPESHISQSNNLYEFELDVAEELLAGEFSKVSLERKPLT
        +E  CP+Y  Y+       + LT  F   ++   L     FRM  ++   SK+      L    SH  +  N       V E++L  E S  SL+ KPLT
Subjt:  IEGFCPQYTTYNPFYNAHVDRLTFSFSNKSEPVPLASQTSFRMVNED--PSKVTVTIPNLDDPESHISQSNNLYEFELDVAEELLAGEFSKVSLERKPLT

Query:  IFYKEKLNTTTSNPKPITINVPSSFEYTSSKAVPWNYEYKVT----VESGSVLVDNVNEVRGITRSGRCYTLEELLK
        IFY+EK +  + + KP  I VP  FEY SSKAVPW YE KVT    V S S+ VDN+  V G+TR+GRCYT + LLK
Subjt:  IFYKEKLNTTTSNPKPITINVPSSFEYTSSKAVPWNYEYKVT----VESGSVLVDNVNEVRGITRSGRCYTLEELLK

XP_022150030.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111018303 [Momordica charantia]2.1e-1749.55Show/hide
Query:  ISQSNNLYEFELDVAEELLAGEFSKVSLERKPLTIFYKEKLNTTTSNPKPITINVPSSFEYTSSKAVPWNYEYKVT----VESGSVLVDNVNEVRGITRS
        ++ +N+  +   +V E++L  E S  S++ K LTIFY+EK +  + + KPITI VP+ FEY SSKAVPW YE KVT    V S S+ VDN+  V G+TR+
Subjt:  ISQSNNLYEFELDVAEELLAGEFSKVSLERKPLTIFYKEKLNTTTSNPKPITINVPSSFEYTSSKAVPWNYEYKVT----VESGSVLVDNVNEVRGITRS

Query:  GRCYTLEELLK
        GRCYT + LLK
Subjt:  GRCYTLEELLK

XP_022155098.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111022231, partial [Momordica charantia]6.0e-1747.15Show/hide
Query:  ISQSNNLYEFELDVAEELLAGEFSKVSLERKPLTIFYKEKLNTTTSNPKPITINVPSSFEYTSSKAVPWNYEYKVTV----ESGSVLVDNVNEVRGITRS
        ++QS+   E  +DV E +   E S  + + KPLT+ Y+EK    +++ +PITI VP+ FEY+SSKAVPW YE KVTV    +S S+ VDN+    G+TR+
Subjt:  ISQSNNLYEFELDVAEELLAGEFSKVSLERKPLTIFYKEKLNTTTSNPKPITINVPSSFEYTSSKAVPWNYEYKVTV----ESGSVLVDNVNEVRGITRS

Query:  GRCYTLEELLKTKAKIRGKPKST
        GRCYT E LLK       KP ST
Subjt:  GRCYTLEELLKTKAKIRGKPKST

XP_022158986.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111025431 [Momordica charantia]1.3e-1639.2Show/hide
Query:  IEGFCPQYTTYNPFYNAHVDRLTFSFSNKSEPVPLASQTSFRM-VNEDPSKVTVTIPNLDDPESHISQSNNLYEFELDVAEELLAGEFSKVSLERKPLTI
        +E  CP     N  Y  + + LT  F   ++   L    SFRM V E      +T+ N     SH  +        +++ E++   E S  +L+ K LTI
Subjt:  IEGFCPQYTTYNPFYNAHVDRLTFSFSNKSEPVPLASQTSFRM-VNEDPSKVTVTIPNLDDPESHISQSNNLYEFELDVAEELLAGEFSKVSLERKPLTI

Query:  FYKEKLNTTTSNPKPITINVPSSFEYTSSKAVPWNYEYKVT----VESGSVLVDNVNEVRGITRSGRCYTLEELLK
        FY EK N    + KPITI VP+ FEY SSKAVPW Y+ KVT    V S  + +DN+  V G+TR+GRCYT + LLK
Subjt:  FYKEKLNTTTSNPKPITINVPSSFEYTSSKAVPWNYEYKVT----VESGSVLVDNVNEVRGITRSGRCYTLEELLK

TrEMBL top hitse value%identityAlignment
A0A6J1CNY7 Ribonuclease H2.9e-1741.81Show/hide
Query:  IEGFCPQYTTYNPFYNAHVDRLTFSFSNKSEPVPLASQTSFRMVNED--PSKVTVTIPNLDDPESHISQSNNLYEFELDVAEELLAGEFSKVSLERKPLT
        +E  CP     N  Y  + + LT  F   ++   L    SFRM+ ++   SK+ +T+ N     SH  +  N+ E ++ VAE  +A E S  +L+ K LT
Subjt:  IEGFCPQYTTYNPFYNAHVDRLTFSFSNKSEPVPLASQTSFRMVNED--PSKVTVTIPNLDDPESHISQSNNLYEFELDVAEELLAGEFSKVSLERKPLT

Query:  IFYKEKLNTTTSNPKPITINVPSSFEYTSSKAVPWNYEYKVT----VESGSVLVDNVNEVRGITRSGRCYTLEELLK
        IFY EK +    + KPITI VP+ FEY SSKAVPW YE KVT    V S  + VDN+  V G+T +GRCYT + LLK
Subjt:  IFYKEKLNTTTSNPKPITINVPSSFEYTSSKAVPWNYEYKVT----VESGSVLVDNVNEVRGITRSGRCYTLEELLK

A0A6J1D099 Ribonuclease H1.2e-1840.68Show/hide
Query:  IEGFCPQYTTYNPFYNAHVDRLTFSFSNKSEPVPLASQTSFRMVNED--PSKVTVTIPNLDDPESHISQSNNLYEFELDVAEELLAGEFSKVSLERKPLT
        +E  CP+Y  Y+       + LT  F   ++   L     FRM  ++   SK+      L    SH  +  N       V E++L  E S  SL+ KPLT
Subjt:  IEGFCPQYTTYNPFYNAHVDRLTFSFSNKSEPVPLASQTSFRMVNED--PSKVTVTIPNLDDPESHISQSNNLYEFELDVAEELLAGEFSKVSLERKPLT

Query:  IFYKEKLNTTTSNPKPITINVPSSFEYTSSKAVPWNYEYKVT----VESGSVLVDNVNEVRGITRSGRCYTLEELLK
        IFY+EK +  + + KP  I VP  FEY SSKAVPW YE KVT    V S S+ VDN+  V G+TR+GRCYT + LLK
Subjt:  IFYKEKLNTTTSNPKPITINVPSSFEYTSSKAVPWNYEYKVT----VESGSVLVDNVNEVRGITRSGRCYTLEELLK

A0A6J1D7C7 Ribonuclease H1.0e-1749.55Show/hide
Query:  ISQSNNLYEFELDVAEELLAGEFSKVSLERKPLTIFYKEKLNTTTSNPKPITINVPSSFEYTSSKAVPWNYEYKVT----VESGSVLVDNVNEVRGITRS
        ++ +N+  +   +V E++L  E S  S++ K LTIFY+EK +  + + KPITI VP+ FEY SSKAVPW YE KVT    V S S+ VDN+  V G+TR+
Subjt:  ISQSNNLYEFELDVAEELLAGEFSKVSLERKPLTIFYKEKLNTTTSNPKPITINVPSSFEYTSSKAVPWNYEYKVT----VESGSVLVDNVNEVRGITRS

Query:  GRCYTLEELLK
        GRCYT + LLK
Subjt:  GRCYTLEELLK

A0A6J1DM29 LOW QUALITY PROTEIN: uncharacterized protein LOC1110222312.9e-1747.15Show/hide
Query:  ISQSNNLYEFELDVAEELLAGEFSKVSLERKPLTIFYKEKLNTTTSNPKPITINVPSSFEYTSSKAVPWNYEYKVTV----ESGSVLVDNVNEVRGITRS
        ++QS+   E  +DV E +   E S  + + KPLT+ Y+EK    +++ +PITI VP+ FEY+SSKAVPW YE KVTV    +S S+ VDN+    G+TR+
Subjt:  ISQSNNLYEFELDVAEELLAGEFSKVSLERKPLTIFYKEKLNTTTSNPKPITINVPSSFEYTSSKAVPWNYEYKVTV----ESGSVLVDNVNEVRGITRS

Query:  GRCYTLEELLKTKAKIRGKPKST
        GRCYT E LLK       KP ST
Subjt:  GRCYTLEELLKTKAKIRGKPKST

A0A6J1DM29 LOW QUALITY PROTEIN: uncharacterized protein LOC1110222312.6e-0533.82Show/hide
Query:  EEQNAEMEKTRKDIEELKEKMETILRMLEKGKFTADIAQP-NATTEVNLPP-------------HPPIEGFCPQYTTYNPFYNAHVDRLTFSFSNKSEPV
        +++ +E EKTRKDIEEL+EK++ IL  LEKGK  A+ + P +       PP              P  EGF  QYTTYNP Y+    +          P 
Subjt:  EEQNAEMEKTRKDIEELKEKMETILRMLEKGKFTADIAQP-NATTEVNLPP-------------HPPIEGFCPQYTTYNPFYNAHVDRLTFSFSNKSEPV

Query:  PLA---SQTSFRMVNEDPSKVTV--TIPNLDDPESH
        PL     Q    ++ ++P +V    T+ NL  P+++
Subjt:  PLA---SQTSFRMVNEDPSKVTV--TIPNLDDPESH

A0A6J1DM29 LOW QUALITY PROTEIN: uncharacterized protein LOC1110222316.5e-1739.2Show/hide
Query:  IEGFCPQYTTYNPFYNAHVDRLTFSFSNKSEPVPLASQTSFRM-VNEDPSKVTVTIPNLDDPESHISQSNNLYEFELDVAEELLAGEFSKVSLERKPLTI
        +E  CP     N  Y  + + LT  F   ++   L    SFRM V E      +T+ N     SH  +        +++ E++   E S  +L+ K LTI
Subjt:  IEGFCPQYTTYNPFYNAHVDRLTFSFSNKSEPVPLASQTSFRM-VNEDPSKVTVTIPNLDDPESHISQSNNLYEFELDVAEELLAGEFSKVSLERKPLTI

Query:  FYKEKLNTTTSNPKPITINVPSSFEYTSSKAVPWNYEYKVT----VESGSVLVDNVNEVRGITRSGRCYTLEELLK
        FY EK N    + KPITI VP+ FEY SSKAVPW Y+ KVT    V S  + +DN+  V G+TR+GRCYT + LLK
Subjt:  FYKEKLNTTTSNPKPITINVPSSFEYTSSKAVPWNYEYKVT----VESGSVLVDNVNEVRGITRSGRCYTLEELLK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGAGCAAAATGCAGAAATGGAGAAAACAAGGAAAGATATTGAGGAATTAAAAGAAAAAATGGAAACCATTCTTCGTATGTTGGAGAAAGGCAAATTCACGGCAGA
TATAGCCCAACCCAACGCTACAACTGAAGTCAATCTACCACCACATCCACCGATTGAGGGATTTTGTCCACAATACACTACATATAATCCTTTTTACAATGCTCATGTTG
ATCGTCTGACTTTTTCCTTCTCAAATAAGAGTGAACCAGTTCCTTTAGCTAGCCAGACAAGCTTCCGGATGGTCAATGAGGATCCATCAAAAGTTACAGTTACGATTCCT
AACCTAGATGATCCCGAATCTCACATAAGTCAGTCAAACAACTTGTATGAGTTTGAATTGGATGTTGCAGAAGAGCTCTTAGCAGGTGAATTCTCAAAGGTTTCTTTAGA
ACGGAAGCCTTTAACGATATTTTACAAAGAGAAACTTAATACCACCACCTCTAATCCAAAGCCAATTACCATAAATGTTCCATCCTCGTTTGAGTACACAAGTTCAAAAG
CAGTACCATGGAATTATGAGTACAAGGTAACTGTGGAATCTGGATCAGTCCTTGTGGACAATGTCAATGAAGTTAGAGGTATAACACGAAGTGGGAGGTGTTATACGCTA
GAAGAGCTGTTGAAAACAAAGGCAAAGATAAGAGGAAAGCCAAAGTCAACGATGCCATTGACTGCAAAATAG
mRNA sequenceShow/hide mRNA sequence
ATGGAGGAGCAAAATGCAGAAATGGAGAAAACAAGGAAAGATATTGAGGAATTAAAAGAAAAAATGGAAACCATTCTTCGTATGTTGGAGAAAGGCAAATTCACGGCAGA
TATAGCCCAACCCAACGCTACAACTGAAGTCAATCTACCACCACATCCACCGATTGAGGGATTTTGTCCACAATACACTACATATAATCCTTTTTACAATGCTCATGTTG
ATCGTCTGACTTTTTCCTTCTCAAATAAGAGTGAACCAGTTCCTTTAGCTAGCCAGACAAGCTTCCGGATGGTCAATGAGGATCCATCAAAAGTTACAGTTACGATTCCT
AACCTAGATGATCCCGAATCTCACATAAGTCAGTCAAACAACTTGTATGAGTTTGAATTGGATGTTGCAGAAGAGCTCTTAGCAGGTGAATTCTCAAAGGTTTCTTTAGA
ACGGAAGCCTTTAACGATATTTTACAAAGAGAAACTTAATACCACCACCTCTAATCCAAAGCCAATTACCATAAATGTTCCATCCTCGTTTGAGTACACAAGTTCAAAAG
CAGTACCATGGAATTATGAGTACAAGGTAACTGTGGAATCTGGATCAGTCCTTGTGGACAATGTCAATGAAGTTAGAGGTATAACACGAAGTGGGAGGTGTTATACGCTA
GAAGAGCTGTTGAAAACAAAGGCAAAGATAAGAGGAAAGCCAAAGTCAACGATGCCATTGACTGCAAAATAG
Protein sequenceShow/hide protein sequence
MEEQNAEMEKTRKDIEELKEKMETILRMLEKGKFTADIAQPNATTEVNLPPHPPIEGFCPQYTTYNPFYNAHVDRLTFSFSNKSEPVPLASQTSFRMVNEDPSKVTVTIP
NLDDPESHISQSNNLYEFELDVAEELLAGEFSKVSLERKPLTIFYKEKLNTTTSNPKPITINVPSSFEYTSSKAVPWNYEYKVTVESGSVLVDNVNEVRGITRSGRCYTL
EELLKTKAKIRGKPKSTMPLTAK