; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0005118 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0005118
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr08:12530045..12531483
RNA-Seq ExpressionPI0005118
SyntenyPI0005118
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN33993.1 retrotransposon gag protein [Cucumis melo subsp. melo]4.6e-4368.64Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYEPQGNTYNAGWRDNPNLRWGNNNQQLTQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQISHL
        G  +KV KCGVC L+GHPNDKCP+++E+ N++RKY+P GNTYN+GWRDNPNLRWGN+NQ+ TQA  +S+NQGTNLED++KALATNT+SFQ EMKQQ++ L
Subjt:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYEPQGNTYNAGWRDNPNLRWGNNNQQLTQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQISHL

Query:  TNAINKLENKGKLPAKPE
        T AI+K++ KGKLPA+P+
Subjt:  TNAINKLENKGKLPAKPE

KAA0047407.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.0e-4269.83Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYEPQGNTYNAGWRDNPNLRWGNNNQQLTQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQISHL
        G  +KV KCGVCGL+GHPNDKCP+++E+ N++RKY+P GNTYN+GWRDNPNLRWGN+NQ+ TQA S+S+NQGTNLED++KALATNT+SFQ EMKQQ++ L
Subjt:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYEPQGNTYNAGWRDNPNLRWGNNNQQLTQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQISHL

Query:  TNAINKLENKGKLPAK
        T AI+K++ KGKL A+
Subjt:  TNAINKLENKGKLPAK

KAA0051761.1 retrotransposon gag protein [Cucumis melo var. makuwa]5.1e-4266.95Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYEPQGNTYNAGWRDNPNLRWGNNNQQLTQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQISHL
        G  +KV KCGVCGL+GHPNDKCP+++E+ N+++KY+P GNTYN+GWRDNPNLRWGN+NQ+ TQA  +S+NQGTNLED++KALATNT+SFQ EMKQQ++ L
Subjt:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYEPQGNTYNAGWRDNPNLRWGNNNQQLTQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQISHL

Query:  TNAINKLENKGKLPAKPE
        T  I+K++ KGKL A+P+
Subjt:  TNAINKLENKGKLPAKPE

KAA0056553.1 retrotransposon gag protein [Cucumis melo var. makuwa]3.9e-4263.49Show/hide
Query:  MAPLPGSFGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYEPQGNTYNAGWRDNPNLRWGNNNQQLTQATSSSNNQGTNLEDLVKALATNTISFQNE
        MA    SFG  +K+ KCGVCGL+GHPNDKCP+++ + N++R+YEP GNTYN+GWRDNPNLRWGN+NQ+ TQA  +S+ QGTNLED++KAL TNT+SFQ E
Subjt:  MAPLPGSFGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYEPQGNTYNAGWRDNPNLRWGNNNQQLTQATSSSNNQGTNLEDLVKALATNTISFQNE

Query:  MKQQISHLTNAINKLENKGKLPAKPE
        MKQQ++  T AI+K++ KGKLPA+ +
Subjt:  MKQQISHLTNAINKLENKGKLPAKPE

XP_016902871.1 PREDICTED: uncharacterized protein LOC107991910 [Cucumis melo]5.1e-4266.95Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYEPQGNTYNAGWRDNPNLRWGNNNQQLTQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQISHL
        G  +KV KCGVCGL+GHPNDKCP+++E+ N+++KY+P GNTYN+GWRDNPNLRWGN+NQ+ TQA  +S+NQGTNLED++KALATNT+SFQ EMKQQ++ L
Subjt:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYEPQGNTYNAGWRDNPNLRWGNNNQQLTQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQISHL

Query:  TNAINKLENKGKLPAKPE
        T  I+K++ KGKL A+P+
Subjt:  TNAINKLENKGKLPAKPE

TrEMBL top hitse value%identityAlignment
A0A1S4E3R2 uncharacterized protein LOC1079919102.5e-4266.95Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYEPQGNTYNAGWRDNPNLRWGNNNQQLTQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQISHL
        G  +KV KCGVCGL+GHPNDKCP+++E+ N+++KY+P GNTYN+GWRDNPNLRWGN+NQ+ TQA  +S+NQGTNLED++KALATNT+SFQ EMKQQ++ L
Subjt:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYEPQGNTYNAGWRDNPNLRWGNNNQQLTQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQISHL

Query:  TNAINKLENKGKLPAKPE
        T  I+K++ KGKL A+P+
Subjt:  TNAINKLENKGKLPAKPE

A0A5D3BX36 Retrotransposon gag protein1.9e-4263.49Show/hide
Query:  MAPLPGSFGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYEPQGNTYNAGWRDNPNLRWGNNNQQLTQATSSSNNQGTNLEDLVKALATNTISFQNE
        MA    SFG  +K+ KCGVCGL+GHPNDKCP+++ + N++R+YEP GNTYN+GWRDNPNLRWGN+NQ+ TQA  +S+ QGTNLED++KAL TNT+SFQ E
Subjt:  MAPLPGSFGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYEPQGNTYNAGWRDNPNLRWGNNNQQLTQATSSSNNQGTNLEDLVKALATNTISFQNE

Query:  MKQQISHLTNAINKLENKGKLPAKPE
        MKQQ++  T AI+K++ KGKLPA+ +
Subjt:  MKQQISHLTNAINKLENKGKLPAKPE

A0A5D3CRR8 Retrotransposon gag protein4.9e-4369.83Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYEPQGNTYNAGWRDNPNLRWGNNNQQLTQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQISHL
        G  +KV KCGVCGL+GHPNDKCP+++E+ N++RKY+P GNTYN+GWRDNPNLRWGN+NQ+ TQA S+S+NQGTNLED++KALATNT+SFQ EMKQQ++ L
Subjt:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYEPQGNTYNAGWRDNPNLRWGNNNQQLTQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQISHL

Query:  TNAINKLENKGKLPAK
        T AI+K++ KGKL A+
Subjt:  TNAINKLENKGKLPAK

A0A5D3DCG3 Retrotransposon gag protein2.5e-4266.95Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYEPQGNTYNAGWRDNPNLRWGNNNQQLTQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQISHL
        G  +KV KCGVCGL+GHPNDKCP+++E+ N+++KY+P GNTYN+GWRDNPNLRWGN+NQ+ TQA  +S+NQGTNLED++KALATNT+SFQ EMKQQ++ L
Subjt:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYEPQGNTYNAGWRDNPNLRWGNNNQQLTQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQISHL

Query:  TNAINKLENKGKLPAKPE
        T  I+K++ KGKL A+P+
Subjt:  TNAINKLENKGKLPAKPE

E5GBZ4 Retrotransposon gag protein2.2e-4368.64Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYEPQGNTYNAGWRDNPNLRWGNNNQQLTQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQISHL
        G  +KV KCGVC L+GHPNDKCP+++E+ N++RKY+P GNTYN+GWRDNPNLRWGN+NQ+ TQA  +S+NQGTNLED++KALATNT+SFQ EMKQQ++ L
Subjt:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYEPQGNTYNAGWRDNPNLRWGNNNQQLTQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQISHL

Query:  TNAINKLENKGKLPAKPE
        T AI+K++ KGKLPA+P+
Subjt:  TNAINKLENKGKLPAKPE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGCCGTTGCCGGGGAGCTTCGGCGGAAATGTGAAAGTCGCAAAATGTGGAGTATGTGGACTAATAGGACATCCCAATGACAAGTGCCCCGACCTTGTGGAAGAAGC
AAATGTCATTAGGAAGTATGAACCCCAAGGAAATACATACAATGCCGGTTGGAGGGACAACCCTAACCTTAGATGGGGAAACAATAATCAACAACTCACACAAGCAACTT
CTTCTTCAAATAATCAAGGTACAAATTTAGAAGATTTGGTTAAAGCTCTTGCAACTAATACAATTTCTTTTCAGAATGAAATGAAACAGCAAATTTCTCATCTCACGAAT
GCCATAAACAAGTTAGAAAACAAAGGCAAACTTCCGGCCAAGCCAGAGTGCCATCTCACTTCGAAGTGGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCGCCGTTGCCGGGGAGCTTCGGCGGAAATGTGAAAGTCGCAAAATGTGGAGTATGTGGACTAATAGGACATCCCAATGACAAGTGCCCCGACCTTGTGGAAGAAGC
AAATGTCATTAGGAAGTATGAACCCCAAGGAAATACATACAATGCCGGTTGGAGGGACAACCCTAACCTTAGATGGGGAAACAATAATCAACAACTCACACAAGCAACTT
CTTCTTCAAATAATCAAGGTACAAATTTAGAAGATTTGGTTAAAGCTCTTGCAACTAATACAATTTCTTTTCAGAATGAAATGAAACAGCAAATTTCTCATCTCACGAAT
GCCATAAACAAGTTAGAAAACAAAGGCAAACTTCCGGCCAAGCCAGAGTGCCATCTCACTTCGAAGTGGTAA
Protein sequenceShow/hide protein sequence
MAPLPGSFGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYEPQGNTYNAGWRDNPNLRWGNNNQQLTQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQISHLTN
AINKLENKGKLPAKPECHLTSKW