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PI0005138 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0005138
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr01:19769168..19771853
RNA-Seq ExpressionPI0005138
SyntenyPI0005138
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN33993.1 retrotransposon gag protein [Cucumis melo subsp. melo]1.2e-4257.14Show/hide
Query:  GGNMKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDP----------KEILTTWGNNNQQPMQATPTSNNQDTNLEDLVKALAVNTISFQNEMKQQMSQL
        G  +KV KCGVC L+GHPNDKCP+++E+ N++RKYDP                WGN+NQ+  QA PTS+NQ TNLED++KALA NT+SFQ EMKQQM+QL
Subjt:  GGNMKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDP----------KEILTTWGNNNQQPMQATPTSNNQDTNLEDLVKALAVNTISFQNEMKQQMSQL

Query:  TNAISKIEGKGKLPAQPDHANVSAISLRSGKILQPPPSEEKVPSNPDLLIDENKKNEENKENNASSPS
        T AISK++GKGKLPAQPD+ANVSAISLRSGKIL  P ++EK  ++  L ++   +++E K     SPS
Subjt:  TNAISKIEGKGKLPAQPDHANVSAISLRSGKILQPPPSEEKVPSNPDLLIDENKKNEENKENNASSPS

KAA0062400.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.5e-4257.56Show/hide
Query:  GGNMKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDP----------KEILTTWGNNNQQPMQATPTSNNQDTNLEDLVKALAVNTISFQNEMKQQMSQL
        G  +KV KCGVCGL+GHPNDKC +++E+ N++R+Y+P          ++    WGN+NQ+  QA  TS+NQ TNLED++KALA NT+SFQ EMKQQM+QL
Subjt:  GGNMKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDP----------KEILTTWGNNNQQPMQATPTSNNQDTNLEDLVKALAVNTISFQNEMKQQMSQL

Query:  TNAISKIEGKGKLPAQPDHANVSAISLRSGKILQPPPS-EEKVPSNPDLLIDENKKNEENKENNASSPSLKD
        T AISK++GKGKLPAQPDHANVSAISLRSGKIL  P + E+KV S P  L  +N+  EE  E N S  + K+
Subjt:  TNAISKIEGKGKLPAQPDHANVSAISLRSGKILQPPPS-EEKVPSNPDLLIDENKKNEENKENNASSPSLKD

KAA0065554.1 retrotransposon gag protein [Cucumis melo var. makuwa]5.2e-4357.74Show/hide
Query:  GGNMKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDP----------KEILTTWGNNNQQPMQATPTSNNQDTNLEDLVKALAVNTISFQNEMKQQMSQL
        G  +KV KCGVCGL+GHPNDK P+++E+ N++R+YDP                WGN+NQ+ +QA  TS+NQ TNLED++KALA+NT+SFQ EMKQQM+QL
Subjt:  GGNMKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDP----------KEILTTWGNNNQQPMQATPTSNNQDTNLEDLVKALAVNTISFQNEMKQQMSQL

Query:  TNAISKIEGKGKLPAQPDHANVSAISLRSGKILQPPPSEEKVPSNPDLLIDENKKNEENKENNASSPS
        T AISK++GKGKLPAQP+HANVSAISLRSGKIL  P ++EK  ++   L+  N KNE  +EN  ++PS
Subjt:  TNAISKIEGKGKLPAQPDHANVSAISLRSGKILQPPPSEEKVPSNPDLLIDENKKNEENKENNASSPS

TYK26581.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.5e-4257.56Show/hide
Query:  GGNMKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDP----------KEILTTWGNNNQQPMQATPTSNNQDTNLEDLVKALAVNTISFQNEMKQQMSQL
        G  +KV KCGVCGL+GHPNDKC +++E+ N++R+Y+P          ++    WGN+NQ+  QA  TS+NQ TNLED++KALA NT+SFQ EMKQQM+QL
Subjt:  GGNMKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDP----------KEILTTWGNNNQQPMQATPTSNNQDTNLEDLVKALAVNTISFQNEMKQQMSQL

Query:  TNAISKIEGKGKLPAQPDHANVSAISLRSGKILQPPPS-EEKVPSNPDLLIDENKKNEENKENNASSPSLKD
        T AISK++GKGKLPAQPDHANVSAISLRSGKIL  P + E+KV S P  L  +N+  EE  E N S  + K+
Subjt:  TNAISKIEGKGKLPAQPDHANVSAISLRSGKILQPPPS-EEKVPSNPDLLIDENKKNEENKENNASSPSLKD

XP_008465649.1 PREDICTED: uncharacterized protein LOC103503291, partial [Cucumis melo]3.4e-4256.98Show/hide
Query:  GGNMKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDP----------KEILTTWGNNNQQPMQATPTSNNQDTNLEDLVKALAVNTISFQNEMKQQMSQL
        G  +KV KCGVCGL+G+PNDKCP ++E+ N++R+YDP                WGN+NQ+  QA PTS+NQ TNLED++KALA NT+SFQ +MKQQM+QL
Subjt:  GGNMKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDP----------KEILTTWGNNNQQPMQATPTSNNQDTNLEDLVKALAVNTISFQNEMKQQMSQL

Query:  TNAISKIEGKGKLPAQPDHANVSAISLRSGKILQPPPS-EEKVPSNPDLLIDENKKNEENKENNASSPSLKD
        T  ISK++GKGKLPAQPDH NVSAISLRSGKIL  P + E+KV S    L  +N+  EE  E N+SS + K+
Subjt:  TNAISKIEGKGKLPAQPDHANVSAISLRSGKILQPPPS-EEKVPSNPDLLIDENKKNEENKENNASSPSLKD

TrEMBL top hitse value%identityAlignment
A0A1S3CQU8 uncharacterized protein LOC1035032911.6e-4256.98Show/hide
Query:  GGNMKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDP----------KEILTTWGNNNQQPMQATPTSNNQDTNLEDLVKALAVNTISFQNEMKQQMSQL
        G  +KV KCGVCGL+G+PNDKCP ++E+ N++R+YDP                WGN+NQ+  QA PTS+NQ TNLED++KALA NT+SFQ +MKQQM+QL
Subjt:  GGNMKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDP----------KEILTTWGNNNQQPMQATPTSNNQDTNLEDLVKALAVNTISFQNEMKQQMSQL

Query:  TNAISKIEGKGKLPAQPDHANVSAISLRSGKILQPPPS-EEKVPSNPDLLIDENKKNEENKENNASSPSLKD
        T  ISK++GKGKLPAQPDH NVSAISLRSGKIL  P + E+KV S    L  +N+  EE  E N+SS + K+
Subjt:  TNAISKIEGKGKLPAQPDHANVSAISLRSGKILQPPPS-EEKVPSNPDLLIDENKKNEENKENNASSPSLKD

A0A5A7V594 Retrotransposon gag protein7.4e-4357.56Show/hide
Query:  GGNMKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDP----------KEILTTWGNNNQQPMQATPTSNNQDTNLEDLVKALAVNTISFQNEMKQQMSQL
        G  +KV KCGVCGL+GHPNDKC +++E+ N++R+Y+P          ++    WGN+NQ+  QA  TS+NQ TNLED++KALA NT+SFQ EMKQQM+QL
Subjt:  GGNMKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDP----------KEILTTWGNNNQQPMQATPTSNNQDTNLEDLVKALAVNTISFQNEMKQQMSQL

Query:  TNAISKIEGKGKLPAQPDHANVSAISLRSGKILQPPPS-EEKVPSNPDLLIDENKKNEENKENNASSPSLKD
        T AISK++GKGKLPAQPDHANVSAISLRSGKIL  P + E+KV S P  L  +N+  EE  E N S  + K+
Subjt:  TNAISKIEGKGKLPAQPDHANVSAISLRSGKILQPPPS-EEKVPSNPDLLIDENKKNEENKENNASSPSLKD

A0A5A7VE49 Retrotransposon gag protein2.5e-4357.74Show/hide
Query:  GGNMKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDP----------KEILTTWGNNNQQPMQATPTSNNQDTNLEDLVKALAVNTISFQNEMKQQMSQL
        G  +KV KCGVCGL+GHPNDK P+++E+ N++R+YDP                WGN+NQ+ +QA  TS+NQ TNLED++KALA+NT+SFQ EMKQQM+QL
Subjt:  GGNMKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDP----------KEILTTWGNNNQQPMQATPTSNNQDTNLEDLVKALAVNTISFQNEMKQQMSQL

Query:  TNAISKIEGKGKLPAQPDHANVSAISLRSGKILQPPPSEEKVPSNPDLLIDENKKNEENKENNASSPS
        T AISK++GKGKLPAQP+HANVSAISLRSGKIL  P ++EK  ++   L+  N KNE  +EN  ++PS
Subjt:  TNAISKIEGKGKLPAQPDHANVSAISLRSGKILQPPPSEEKVPSNPDLLIDENKKNEENKENNASSPS

A0A5D3DS57 Retrotransposon gag protein7.4e-4357.56Show/hide
Query:  GGNMKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDP----------KEILTTWGNNNQQPMQATPTSNNQDTNLEDLVKALAVNTISFQNEMKQQMSQL
        G  +KV KCGVCGL+GHPNDKC +++E+ N++R+Y+P          ++    WGN+NQ+  QA  TS+NQ TNLED++KALA NT+SFQ EMKQQM+QL
Subjt:  GGNMKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDP----------KEILTTWGNNNQQPMQATPTSNNQDTNLEDLVKALAVNTISFQNEMKQQMSQL

Query:  TNAISKIEGKGKLPAQPDHANVSAISLRSGKILQPPPS-EEKVPSNPDLLIDENKKNEENKENNASSPSLKD
        T AISK++GKGKLPAQPDHANVSAISLRSGKIL  P + E+KV S P  L  +N+  EE  E N S  + K+
Subjt:  TNAISKIEGKGKLPAQPDHANVSAISLRSGKILQPPPS-EEKVPSNPDLLIDENKKNEENKENNASSPSLKD

E5GBZ4 Retrotransposon gag protein5.7e-4357.14Show/hide
Query:  GGNMKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDP----------KEILTTWGNNNQQPMQATPTSNNQDTNLEDLVKALAVNTISFQNEMKQQMSQL
        G  +KV KCGVC L+GHPNDKCP+++E+ N++RKYDP                WGN+NQ+  QA PTS+NQ TNLED++KALA NT+SFQ EMKQQM+QL
Subjt:  GGNMKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDP----------KEILTTWGNNNQQPMQATPTSNNQDTNLEDLVKALAVNTISFQNEMKQQMSQL

Query:  TNAISKIEGKGKLPAQPDHANVSAISLRSGKILQPPPSEEKVPSNPDLLIDENKKNEENKENNASSPS
        T AISK++GKGKLPAQPD+ANVSAISLRSGKIL  P ++EK  ++  L ++   +++E K     SPS
Subjt:  TNAISKIEGKGKLPAQPDHANVSAISLRSGKILQPPPSEEKVPSNPDLLIDENKKNEENKENNASSPS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGCCATTGCCGGGGAGCGACGGTGGAAATATGAAAGTTGCCAAATGTGGAGTATGTGGACTAATAGGACATCCTAATGATAAGTGCCCTGACCTAGTGGAAGAGGC
AAATGTCATTAGGAAGTACGATCCCAAGGAAATACTTACAACATGGGGAAACAATAATCAACAACCCATGCAAGCAACTCCTACTTCAAATAATCAAGATACAAATTTGG
AGGATTTGGTAAAAGCTCTTGCTGTTAATACAATTTCTTTTCAAAATGAAATGAAGCAACAAATGTCTCAATTAACAAATGCAATAAGCAAAATAGAAGGCAAAGGCAAG
CTGCCAGCGCAGCCTGATCATGCAAATGTAAGTGCCATCTCACTTAGAAGTGGTAAAATTCTGCAACCTCCTCCAAGTGAAGAAAAGGTACCTTCTAACCCTGACCTTCT
AATTGATGAAAACAAGAAAAATGAAGAAAATAAAGAAAACAATGCCTCTTCTCCTTCTTTAAAAGACTGCCTTCTTCGCGAGGCAAGTTCTTCACAACTAGAGGTCCGCG
AGATACTTCATCTGCAGAAGTACATATCCATGCAGCGCAATGCAAACATTTGTTCGCCAACTCACCAAGTCAAGCTCACTTACCCGAAACGCATGAAGTCTGCAATCAGC
TCGCAACCAGCTCGCATAATGCATCACTCTTCTCAATCAGCTCGCAAATCTTCTGATCGCCTAAAAACGGTTATTATAACCACTGAGCCCAAGCCACGGCCCAAGCCCAT
TGTGGCAAAATAA
mRNA sequenceShow/hide mRNA sequence
ATGGTGCCATTGCCGGGGAGCGACGGTGGAAATATGAAAGTTGCCAAATGTGGAGTATGTGGACTAATAGGACATCCTAATGATAAGTGCCCTGACCTAGTGGAAGAGGC
AAATGTCATTAGGAAGTACGATCCCAAGGAAATACTTACAACATGGGGAAACAATAATCAACAACCCATGCAAGCAACTCCTACTTCAAATAATCAAGATACAAATTTGG
AGGATTTGGTAAAAGCTCTTGCTGTTAATACAATTTCTTTTCAAAATGAAATGAAGCAACAAATGTCTCAATTAACAAATGCAATAAGCAAAATAGAAGGCAAAGGCAAG
CTGCCAGCGCAGCCTGATCATGCAAATGTAAGTGCCATCTCACTTAGAAGTGGTAAAATTCTGCAACCTCCTCCAAGTGAAGAAAAGGTACCTTCTAACCCTGACCTTCT
AATTGATGAAAACAAGAAAAATGAAGAAAATAAAGAAAACAATGCCTCTTCTCCTTCTTTAAAAGACTGCCTTCTTCGCGAGGCAAGTTCTTCACAACTAGAGGTCCGCG
AGATACTTCATCTGCAGAAGTACATATCCATGCAGCGCAATGCAAACATTTGTTCGCCAACTCACCAAGTCAAGCTCACTTACCCGAAACGCATGAAGTCTGCAATCAGC
TCGCAACCAGCTCGCATAATGCATCACTCTTCTCAATCAGCTCGCAAATCTTCTGATCGCCTAAAAACGGTTATTATAACCACTGAGCCCAAGCCACGGCCCAAGCCCAT
TGTGGCAAAATAA
Protein sequenceShow/hide protein sequence
MVPLPGSDGGNMKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPKEILTTWGNNNQQPMQATPTSNNQDTNLEDLVKALAVNTISFQNEMKQQMSQLTNAISKIEGKGK
LPAQPDHANVSAISLRSGKILQPPPSEEKVPSNPDLLIDENKKNEENKENNASSPSLKDCLLREASSSQLEVREILHLQKYISMQRNANICSPTHQVKLTYPKRMKSAIS
SQPARIMHHSSQSARKSSDRLKTVIITTEPKPRPKPIVAK