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PI0005141 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0005141
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr10:5150843..5153301
RNA-Seq ExpressionPI0005141
SyntenyPI0005141
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN33993.1 retrotransposon gag protein [Cucumis melo subsp. melo]7.6e-5764.13Show/hide
Query:  MAPLLGS--DGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQSNNFEDLVKALATNTISFQ
        M  LL S   G  +KV KCGVC LVGHPNDKCP+++E+ N++RKYDP+ NTYN+GWRDNPNLRWGNDNQ+  QA  +S+NQ  N ED++KALATNT+SFQ
Subjt:  MAPLLGS--DGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQSNNFEDLVKALATNTISFQ

Query:  NEMKQQISQLTNAISKLEGKGKLPTQPDHGNVSAISLRSGKIVETPSSEEKVSTPDL--LEDKNEKKEEKQGTSTQPSSSKGTR
         EMKQQ++QLT AISK++GKGKLP QPD+ NVSAISLRSGKI++TP+++EK  T  L  L  KNE KEEK  T+  PS+SK  +
Subjt:  NEMKQQISQLTNAISKLEGKGKLPTQPDHGNVSAISLRSGKIVETPSSEEKVSTPDL--LEDKNEKKEEKQGTSTQPSSSKGTR

KAA0038454.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.1e-5565.52Show/hide
Query:  GGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQSNNFEDLVKALATNTISFQNEMKQQISQL
        G  +KV KCGVC LVGH NDKCP+++E+ N++RKYDP+ NTYN+GWRDNPNLRWGNDNQ+  QA  +S+NQ  N ED++KALATNT SFQ EMKQQ++QL
Subjt:  GGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQSNNFEDLVKALATNTISFQNEMKQQISQL

Query:  TNAISKLEGKGKLPTQPDHGNVSAISLRSGKIVETPSSEEKVSTPDL--LEDKNEKKEEKQGTSTQPSSSKGTR
        T AISK++GKGKLP QPDH NVSAISLRSGKI+ TP+++EK  T  L  L  KNE KEEK  T+  PS+SK  +
Subjt:  TNAISKLEGKGKLPTQPDHGNVSAISLRSGKIVETPSSEEKVSTPDL--LEDKNEKKEEKQGTSTQPSSSKGTR

KAA0051761.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.1e-5564.37Show/hide
Query:  GGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQSNNFEDLVKALATNTISFQNEMKQQISQL
        G  +KV KCGVCGLVGHPNDKCP+++E+ N+++KYDPH NTYN+GWRDNPNLRWGNDNQ+  QA  +S+NQ  N ED++KALATNT+SFQ EMKQQ++QL
Subjt:  GGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQSNNFEDLVKALATNTISFQNEMKQQISQL

Query:  TNAISKLEGKGKLPTQPDHGNVSAISLRSGKIVETPSSEEK--VSTPDLLEDKNEKKEEKQGTSTQPSSSKGTR
        T  ISK++GKGKL  QPDH NVS ISLRS KI++TP+++EK   S P  L  KNE KEEK  T+  PS+SK  +
Subjt:  TNAISKLEGKGKLPTQPDHGNVSAISLRSGKIVETPSSEEK--VSTPDLLEDKNEKKEEKQGTSTQPSSSKGTR

KAA0067359.1 retrotransposon gag protein [Cucumis melo var. makuwa]5.8e-5766.09Show/hide
Query:  GGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQSNNFEDLVKALATNTISFQNEMKQQISQL
        G  +KV KCGVCGLVGH N+KCP+++E+ N++R+YDPHSNTYN+GWRDNPNLRWGNDNQ+  QA S+S+NQ  N ED++KALATNT+SFQ EMKQQ++QL
Subjt:  GGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQSNNFEDLVKALATNTISFQNEMKQQISQL

Query:  TNAISKLEGKGKLPTQPDHGNVSAISLRSGKIVETPSSEEK--VSTPDLLEDKNEKKEEKQGTSTQPSSSKGTR
        T AISK++GKGKLP Q DH NVSAISLRSGKI++TP+++EK   S P  L  KNE KEEK  T+  PS+SK  +
Subjt:  TNAISKLEGKGKLPTQPDHGNVSAISLRSGKIVETPSSEEK--VSTPDLLEDKNEKKEEKQGTSTQPSSSKGTR

XP_016902871.1 PREDICTED: uncharacterized protein LOC107991910 [Cucumis melo]1.1e-5564.37Show/hide
Query:  GGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQSNNFEDLVKALATNTISFQNEMKQQISQL
        G  +KV KCGVCGLVGHPNDKCP+++E+ N+++KYDPH NTYN+GWRDNPNLRWGNDNQ+  QA  +S+NQ  N ED++KALATNT+SFQ EMKQQ++QL
Subjt:  GGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQSNNFEDLVKALATNTISFQNEMKQQISQL

Query:  TNAISKLEGKGKLPTQPDHGNVSAISLRSGKIVETPSSEEK--VSTPDLLEDKNEKKEEKQGTSTQPSSSKGTR
        T  ISK++GKGKL  QPDH NVS ISLRS KI++TP+++EK   S P  L  KNE KEEK  T+  PS+SK  +
Subjt:  TNAISKLEGKGKLPTQPDHGNVSAISLRSGKIVETPSSEEK--VSTPDLLEDKNEKKEEKQGTSTQPSSSKGTR

TrEMBL top hitse value%identityAlignment
A0A1S4E3R2 uncharacterized protein LOC1079919105.3e-5664.37Show/hide
Query:  GGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQSNNFEDLVKALATNTISFQNEMKQQISQL
        G  +KV KCGVCGLVGHPNDKCP+++E+ N+++KYDPH NTYN+GWRDNPNLRWGNDNQ+  QA  +S+NQ  N ED++KALATNT+SFQ EMKQQ++QL
Subjt:  GGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQSNNFEDLVKALATNTISFQNEMKQQISQL

Query:  TNAISKLEGKGKLPTQPDHGNVSAISLRSGKIVETPSSEEK--VSTPDLLEDKNEKKEEKQGTSTQPSSSKGTR
        T  ISK++GKGKL  QPDH NVS ISLRS KI++TP+++EK   S P  L  KNE KEEK  T+  PS+SK  +
Subjt:  TNAISKLEGKGKLPTQPDHGNVSAISLRSGKIVETPSSEEK--VSTPDLLEDKNEKKEEKQGTSTQPSSSKGTR

A0A5A7T4R3 Retrotransposon gag protein5.3e-5665.52Show/hide
Query:  GGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQSNNFEDLVKALATNTISFQNEMKQQISQL
        G  +KV KCGVC LVGH NDKCP+++E+ N++RKYDP+ NTYN+GWRDNPNLRWGNDNQ+  QA  +S+NQ  N ED++KALATNT SFQ EMKQQ++QL
Subjt:  GGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQSNNFEDLVKALATNTISFQNEMKQQISQL

Query:  TNAISKLEGKGKLPTQPDHGNVSAISLRSGKIVETPSSEEKVSTPDL--LEDKNEKKEEKQGTSTQPSSSKGTR
        T AISK++GKGKLP QPDH NVSAISLRSGKI+ TP+++EK  T  L  L  KNE KEEK  T+  PS+SK  +
Subjt:  TNAISKLEGKGKLPTQPDHGNVSAISLRSGKIVETPSSEEKVSTPDL--LEDKNEKKEEKQGTSTQPSSSKGTR

A0A5A7VQ60 Retrotransposon gag protein2.8e-5766.09Show/hide
Query:  GGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQSNNFEDLVKALATNTISFQNEMKQQISQL
        G  +KV KCGVCGLVGH N+KCP+++E+ N++R+YDPHSNTYN+GWRDNPNLRWGNDNQ+  QA S+S+NQ  N ED++KALATNT+SFQ EMKQQ++QL
Subjt:  GGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQSNNFEDLVKALATNTISFQNEMKQQISQL

Query:  TNAISKLEGKGKLPTQPDHGNVSAISLRSGKIVETPSSEEK--VSTPDLLEDKNEKKEEKQGTSTQPSSSKGTR
        T AISK++GKGKLP Q DH NVSAISLRSGKI++TP+++EK   S P  L  KNE KEEK  T+  PS+SK  +
Subjt:  TNAISKLEGKGKLPTQPDHGNVSAISLRSGKIVETPSSEEK--VSTPDLLEDKNEKKEEKQGTSTQPSSSKGTR

A0A5D3DCG3 Retrotransposon gag protein5.3e-5664.37Show/hide
Query:  GGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQSNNFEDLVKALATNTISFQNEMKQQISQL
        G  +KV KCGVCGLVGHPNDKCP+++E+ N+++KYDPH NTYN+GWRDNPNLRWGNDNQ+  QA  +S+NQ  N ED++KALATNT+SFQ EMKQQ++QL
Subjt:  GGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQSNNFEDLVKALATNTISFQNEMKQQISQL

Query:  TNAISKLEGKGKLPTQPDHGNVSAISLRSGKIVETPSSEEK--VSTPDLLEDKNEKKEEKQGTSTQPSSSKGTR
        T  ISK++GKGKL  QPDH NVS ISLRS KI++TP+++EK   S P  L  KNE KEEK  T+  PS+SK  +
Subjt:  TNAISKLEGKGKLPTQPDHGNVSAISLRSGKIVETPSSEEK--VSTPDLLEDKNEKKEEKQGTSTQPSSSKGTR

E5GBZ4 Retrotransposon gag protein3.7e-5764.13Show/hide
Query:  MAPLLGS--DGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQSNNFEDLVKALATNTISFQ
        M  LL S   G  +KV KCGVC LVGHPNDKCP+++E+ N++RKYDP+ NTYN+GWRDNPNLRWGNDNQ+  QA  +S+NQ  N ED++KALATNT+SFQ
Subjt:  MAPLLGS--DGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQSNNFEDLVKALATNTISFQ

Query:  NEMKQQISQLTNAISKLEGKGKLPTQPDHGNVSAISLRSGKIVETPSSEEKVSTPDL--LEDKNEKKEEKQGTSTQPSSSKGTR
         EMKQQ++QLT AISK++GKGKLP QPD+ NVSAISLRSGKI++TP+++EK  T  L  L  KNE KEEK  T+  PS+SK  +
Subjt:  NEMKQQISQLTNAISKLEGKGKLPTQPDHGNVSAISLRSGKIVETPSSEEKVSTPDL--LEDKNEKKEEKQGTSTQPSSSKGTR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGCCGTTGCTAGGGAGCGACGGTGGATCTGTGAAAGTCGCTAAGTGCGGGGTGTGCGGTCTAGTCGGGCATCCTAATGACAAGTGCCCTGATCTTGTGGAAGAGGC
AAATGTCATTAGGAAGTACGATCCTCATAGTAACACATACAACGCCGGTTGGAGAGACAACCCTAACCTTAGATGGGGAAACGATAACCAAAGACCCGCGCAAGCAACTT
CTTCTTCAAATAATCAAAGTAATAATTTTGAAGACTTAGTTAAAGCTCTTGCAACTAACACAATCTCTTTTCAGAATGAAATGAAACAACAAATATCTCAACTAACAAAT
GCCATAAGCAAGCTAGAAGGCAAAGGCAAGCTTCCAACTCAGCCTGATCATGGAAACGTAAGTGCCATCTCGCTTAGAAGCGGTAAGATTGTGGAAACCCCTTCAAGCGA
AGAAAAGGTATCTACTCCTGACCTTCTAGAAGATAAAAATGAGAAAAAGGAAGAAAAACAAGGAACTAGTACTCAACCATCTTCTTCAAAAGGAACTAGGGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCGCCGTTGCTAGGGAGCGACGGTGGATCTGTGAAAGTCGCTAAGTGCGGGGTGTGCGGTCTAGTCGGGCATCCTAATGACAAGTGCCCTGATCTTGTGGAAGAGGC
AAATGTCATTAGGAAGTACGATCCTCATAGTAACACATACAACGCCGGTTGGAGAGACAACCCTAACCTTAGATGGGGAAACGATAACCAAAGACCCGCGCAAGCAACTT
CTTCTTCAAATAATCAAAGTAATAATTTTGAAGACTTAGTTAAAGCTCTTGCAACTAACACAATCTCTTTTCAGAATGAAATGAAACAACAAATATCTCAACTAACAAAT
GCCATAAGCAAGCTAGAAGGCAAAGGCAAGCTTCCAACTCAGCCTGATCATGGAAACGTAAGTGCCATCTCGCTTAGAAGCGGTAAGATTGTGGAAACCCCTTCAAGCGA
AGAAAAGGTATCTACTCCTGACCTTCTAGAAGATAAAAATGAGAAAAAGGAAGAAAAACAAGGAACTAGTACTCAACCATCTTCTTCAAAAGGAACTAGGGATTGA
Protein sequenceShow/hide protein sequence
MAPLLGSDGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQSNNFEDLVKALATNTISFQNEMKQQISQLTN
AISKLEGKGKLPTQPDHGNVSAISLRSGKIVETPSSEEKVSTPDLLEDKNEKKEEKQGTSTQPSSSKGTRD