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PI0005144 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0005144
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr07:8842960..8843526
RNA-Seq ExpressionPI0005144
SyntenyPI0005144
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN33993.1 retrotransposon gag protein [Cucumis melo subsp. melo]9.9e-6871.51Show/hide
Query:  MLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPNLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQGTNLEDLVKALATNTI
        MLNMTTLLTSFVQG  +KV KCGVC LVGHPNDKCP ++E+ N++RKYDP+ NTYN+GWRDNPNLRWGNDNQ+  QA  +S+NQGTNLED++KALATNT+
Subjt:  MLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPNLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQGTNLEDLVKALATNTI

Query:  YFQNEMKQQMSHLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILETPSS-EEKVTSTPILLENKDEKKEEKLETSSLPSSSKGN
         FQ EMKQQM+ LT AISK++GKGKLPAQPD+ANVSAISLRSGKIL+TP++ E+KVTS  + L +K+E KEEK+ET+  PS+SK +
Subjt:  YFQNEMKQQMSHLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILETPSS-EEKVTSTPILLENKDEKKEEKLETSSLPSSSKGN

KAA0047407.1 retrotransposon gag protein [Cucumis melo var. makuwa]3.8e-6770.43Show/hide
Query:  MLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPNLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQGTNLEDLVKALATNTI
        MLNMTTLLTSFVQG  +KV KCGVCGLVGHPNDKCP ++E+ N++RKYDPH NTYN+GWRDNPNLRWGNDNQ+  QA S+S+NQGTNLED++KALATNT+
Subjt:  MLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPNLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQGTNLEDLVKALATNTI

Query:  YFQNEMKQQMSHLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILETPSS-EEKVTSTPILLENKDEKKEEKLETSSLPSSSKGN
         FQ EMKQQM+ LT AISK++GKGKL AQ ++ANVSA+SLRSGKIL+TP++ E+K TS P+ L  K+E KEEK+ET+  P +SK +
Subjt:  YFQNEMKQQMSHLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILETPSS-EEKVTSTPILLENKDEKKEEKLETSSLPSSSKGN

KAA0067359.1 retrotransposon gag protein [Cucumis melo var. makuwa]7.6e-6872.19Show/hide
Query:  MLNM-TTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPNLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQGTNLEDLVKALATNT
        MLNM TTLLTSFVQG  +KV KCGVCGLVGH N+KCP ++E+ N++R+YDPHSNTYN+GWRDNPNLRWGNDNQ+  QA S+S+NQGTNLED++KALATNT
Subjt:  MLNM-TTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPNLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQGTNLEDLVKALATNT

Query:  IYFQNEMKQQMSHLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILETPSS-EEKVTSTPILLENKDEKKEEKLETSSLPSSSKGN
        + FQ EMKQQM+ LT AISK++GKGKLPAQ DHANVSAISLRSGKIL+TP++ E+KVTS P+ L +K+E KEEK+ET+  PS+SK +
Subjt:  IYFQNEMKQQMSHLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILETPSS-EEKVTSTPILLENKDEKKEEKLETSSLPSSSKGN

TYK07549.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.1e-6669.15Show/hide
Query:  MLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPNLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQGTNLEDLVKALATNTI
        MLNMTTLLTSFVQG   KV KCGVCGLVGHPNDKCP ++E+ N++R+YDPHSNTYN+GWRDN NLRWGNDNQ+  QA S+S+NQGTNLED++KALATNT+
Subjt:  MLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPNLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQGTNLEDLVKALATNTI

Query:  YFQNEMKQQMSHLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILETPSS-EEKVTSTPILLENKDEKKEEKLETSSLPSSSKGNPM
         FQ +MKQQM+ LT AISK++GKGKLPAQPDHANVSAISLRSGKIL+TP++ E+K+TS P+ L +K+E KEEK+++    ++  G  +
Subjt:  YFQNEMKQQMSHLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILETPSS-EEKVTSTPILLENKDEKKEEKLETSSLPSSSKGNPM

XP_008465649.1 PREDICTED: uncharacterized protein LOC103503291, partial [Cucumis melo]4.9e-6769.89Show/hide
Query:  MLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPNLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQGTNLEDLVKALATNTI
        MLNMTTLLTSFVQG ++KV KCGVCGLVG+PNDKCP ++E+ N++R+YDPH NTYN GWRDNPNLRWGNDNQ+  QA  +S+NQGTNLED++KALATNT+
Subjt:  MLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPNLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQGTNLEDLVKALATNTI

Query:  YFQNEMKQQMSHLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILETPSS-EEKVTSTPILLENKDEKKEEKLETSSLPSSSKGN
         FQ +MKQQM+ LT  ISK++GKGKLPAQPDH NVSAISLRSGKIL+TP++ E+KVTS  + L +K++ KEEK+ET+S  S+SK +
Subjt:  YFQNEMKQQMSHLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILETPSS-EEKVTSTPILLENKDEKKEEKLETSSLPSSSKGN

TrEMBL top hitse value%identityAlignment
A0A1S3CQU8 uncharacterized protein LOC1035032912.4e-6769.89Show/hide
Query:  MLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPNLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQGTNLEDLVKALATNTI
        MLNMTTLLTSFVQG ++KV KCGVCGLVG+PNDKCP ++E+ N++R+YDPH NTYN GWRDNPNLRWGNDNQ+  QA  +S+NQGTNLED++KALATNT+
Subjt:  MLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPNLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQGTNLEDLVKALATNTI

Query:  YFQNEMKQQMSHLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILETPSS-EEKVTSTPILLENKDEKKEEKLETSSLPSSSKGN
         FQ +MKQQM+ LT  ISK++GKGKLPAQPDH NVSAISLRSGKIL+TP++ E+KVTS  + L +K++ KEEK+ET+S  S+SK +
Subjt:  YFQNEMKQQMSHLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILETPSS-EEKVTSTPILLENKDEKKEEKLETSSLPSSSKGN

A0A5A7VQ60 Retrotransposon gag protein3.7e-6872.19Show/hide
Query:  MLNM-TTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPNLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQGTNLEDLVKALATNT
        MLNM TTLLTSFVQG  +KV KCGVCGLVGH N+KCP ++E+ N++R+YDPHSNTYN+GWRDNPNLRWGNDNQ+  QA S+S+NQGTNLED++KALATNT
Subjt:  MLNM-TTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPNLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQGTNLEDLVKALATNT

Query:  IYFQNEMKQQMSHLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILETPSS-EEKVTSTPILLENKDEKKEEKLETSSLPSSSKGN
        + FQ EMKQQM+ LT AISK++GKGKLPAQ DHANVSAISLRSGKIL+TP++ E+KVTS P+ L +K+E KEEK+ET+  PS+SK +
Subjt:  IYFQNEMKQQMSHLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILETPSS-EEKVTSTPILLENKDEKKEEKLETSSLPSSSKGN

A0A5D3CB46 Retrotransposon gag protein5.3e-6769.15Show/hide
Query:  MLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPNLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQGTNLEDLVKALATNTI
        MLNMTTLLTSFVQG   KV KCGVCGLVGHPNDKCP ++E+ N++R+YDPHSNTYN+GWRDN NLRWGNDNQ+  QA S+S+NQGTNLED++KALATNT+
Subjt:  MLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPNLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQGTNLEDLVKALATNTI

Query:  YFQNEMKQQMSHLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILETPSS-EEKVTSTPILLENKDEKKEEKLETSSLPSSSKGNPM
         FQ +MKQQM+ LT AISK++GKGKLPAQPDHANVSAISLRSGKIL+TP++ E+K+TS P+ L +K+E KEEK+++    ++  G  +
Subjt:  YFQNEMKQQMSHLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILETPSS-EEKVTSTPILLENKDEKKEEKLETSSLPSSSKGNPM

A0A5D3CRR8 Retrotransposon gag protein1.8e-6770.43Show/hide
Query:  MLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPNLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQGTNLEDLVKALATNTI
        MLNMTTLLTSFVQG  +KV KCGVCGLVGHPNDKCP ++E+ N++RKYDPH NTYN+GWRDNPNLRWGNDNQ+  QA S+S+NQGTNLED++KALATNT+
Subjt:  MLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPNLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQGTNLEDLVKALATNTI

Query:  YFQNEMKQQMSHLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILETPSS-EEKVTSTPILLENKDEKKEEKLETSSLPSSSKGN
         FQ EMKQQM+ LT AISK++GKGKL AQ ++ANVSA+SLRSGKIL+TP++ E+K TS P+ L  K+E KEEK+ET+  P +SK +
Subjt:  YFQNEMKQQMSHLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILETPSS-EEKVTSTPILLENKDEKKEEKLETSSLPSSSKGN

E5GBZ4 Retrotransposon gag protein4.8e-6871.51Show/hide
Query:  MLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPNLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQGTNLEDLVKALATNTI
        MLNMTTLLTSFVQG  +KV KCGVC LVGHPNDKCP ++E+ N++RKYDP+ NTYN+GWRDNPNLRWGNDNQ+  QA  +S+NQGTNLED++KALATNT+
Subjt:  MLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPNLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQGTNLEDLVKALATNTI

Query:  YFQNEMKQQMSHLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILETPSS-EEKVTSTPILLENKDEKKEEKLETSSLPSSSKGN
         FQ EMKQQM+ LT AISK++GKGKLPAQPD+ANVSAISLRSGKIL+TP++ E+KVTS  + L +K+E KEEK+ET+  PS+SK +
Subjt:  YFQNEMKQQMSHLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILETPSS-EEKVTSTPILLENKDEKKEEKLETSSLPSSSKGN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTAATATGACTACTTTACTAACTTCCTTTGTGCAAGGTGGATCTGTAAAAGTTGCAAAGTGTGGGGTGTGCGGTCTAGTCGGACATCCTAATGACAAGTGCCCTAA
CTTAGTGGAAGAGGCAAATGTCATTAGGAAGTATGATCCTCATAGTAACACTTACAATGCCGGTTGGAGAGACAACCCTAATCTGAGATGGGGAAACGACAACCAAAGAC
CTGCGCAAGCAACCTCCTCTTCAAATAATCAAGGTACTAATTTGGAAGATTTAGTTAAAGCTCTTGCTACTAATACAATCTATTTTCAGAATGAAATGAAGCAACAAATG
TCTCATCTAACAAATGCCATAAGCAAACTAGAAGGTAAAGGCAAACTTCCGGCTCAGCCTGATCATGCCAACGTAAGTGCCATCTCGCTTAGAAGCGGTAAGATTCTGGA
AACCCCTTCAAGCGAAGAAAAGGTAACTTCTACCCCTATCCTTCTAGAAAATAAAGATGAGAAAAAGGAAGAAAAGTTAGAAACTAGTTCTTTACCATCATCTTCTAAAG
GAAATCCCATGTCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGCTTAATATGACTACTTTACTAACTTCCTTTGTGCAAGGTGGATCTGTAAAAGTTGCAAAGTGTGGGGTGTGCGGTCTAGTCGGACATCCTAATGACAAGTGCCCTAA
CTTAGTGGAAGAGGCAAATGTCATTAGGAAGTATGATCCTCATAGTAACACTTACAATGCCGGTTGGAGAGACAACCCTAATCTGAGATGGGGAAACGACAACCAAAGAC
CTGCGCAAGCAACCTCCTCTTCAAATAATCAAGGTACTAATTTGGAAGATTTAGTTAAAGCTCTTGCTACTAATACAATCTATTTTCAGAATGAAATGAAGCAACAAATG
TCTCATCTAACAAATGCCATAAGCAAACTAGAAGGTAAAGGCAAACTTCCGGCTCAGCCTGATCATGCCAACGTAAGTGCCATCTCGCTTAGAAGCGGTAAGATTCTGGA
AACCCCTTCAAGCGAAGAAAAGGTAACTTCTACCCCTATCCTTCTAGAAAATAAAGATGAGAAAAAGGAAGAAAAGTTAGAAACTAGTTCTTTACCATCATCTTCTAAAG
GAAATCCCATGTCTTAA
Protein sequenceShow/hide protein sequence
MLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPNLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQGTNLEDLVKALATNTIYFQNEMKQQM
SHLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILETPSSEEKVTSTPILLENKDEKKEEKLETSSLPSSSKGNPMS