CuGenDBv2

Gene ID	PI0005147
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	50S ribosomal protein L34
Genome location	chr04:11833521..11847537
RNA-Seq Expression	PI0005147
Synteny	PI0005147
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005762 - mitochondrial large ribosomal subunit (cellular component) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR000271 - Ribosomal protein L34 IPR020939 - Ribosomal protein L34, conserved site

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6581832.1 hypothetical protein SDJN03_21834, partial [Cucurbita argyrosperma subsp. sororia]

8.7e-67

91.16

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Query:  MASKLLIRTGNSLMNRLRLSSAPQNNRIWGNQALSHGHGVEVTPMLFPSVSKHQTAHPLQQNDTESLRQLQSEGIFFPFGLPSLRFFLPDGDASSTQEPM
        MASKLLIRTGNSLMNRLRLSS  QNN IW +Q+LS GHGV+VTPMLFPSVSKHQTAH LQQNDTESLR+L+SEGIFFPFGLPSLRFFLPDG+ SSTQEPM
Subjt:  MASKLLIRTGNSLMNRLRLSSAPQNNRIWGNQALSHGHGVEVTPMLFPSVSKHQTAHPLQQNDTESLRQLQSEGIFFPFGLPSLRFFLPDGDASSTQEPM

Query:  LLFPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA
        LLFPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA
Subjt:  LLFPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA

XP_004141160.2 uncharacterized protein LOC101210601 [Cucumis sativus]

2.8e-73

97.32

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Query:  MLMASKLLIRTGNSLMNRLRLSSAPQNNRIWGNQALSHGHGVEVTPMLFPSVSKHQTAHPLQQNDTESLRQLQSEGIFFPFGLPSLRFFLPDGDASSTQE
        +LMASKLLIRTG+SLMNRLRLSSA QNNRIWG+QALSHGHGVEVTPMLFPSVSKHQTAHPLQQNDTESLRQLQSEGIFFPFGLPSLRFFLPDGDASSTQE
Subjt:  MLMASKLLIRTGNSLMNRLRLSSAPQNNRIWGNQALSHGHGVEVTPMLFPSVSKHQTAHPLQQNDTESLRQLQSEGIFFPFGLPSLRFFLPDGDASSTQE

Query:  PMLLFPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA
        PMLLFPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA
Subjt:  PMLLFPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA

XP_008447614.1 PREDICTED: uncharacterized protein LOC103490028 [Cucumis melo]

3.1e-72

97.28

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Query:  MASKLLIRTGNSLMNRLRLSSAPQNNRIWGNQALSHGHGVEVTPMLFPSVSKHQTAHPLQQNDTESLRQLQSEGIFFPFGLPSLRFFLPDGDASSTQEPM
        MASKLLIRTGNS MNRLRLSSA QNNRIWG+QALSHGHGVEVTPMLFPSVSKHQ AHPLQQNDTESLRQLQSEGIFFPFGLPSLRFFLPDGDASSTQEPM
Subjt:  MASKLLIRTGNSLMNRLRLSSAPQNNRIWGNQALSHGHGVEVTPMLFPSVSKHQTAHPLQQNDTESLRQLQSEGIFFPFGLPSLRFFLPDGDASSTQEPM

Query:  LLFPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA
        LLFPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA
Subjt:  LLFPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA

XP_022955352.1 uncharacterized protein LOC111457406 isoform X2 [Cucurbita moschata]

2.3e-67

91.84

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Query:  MASKLLIRTGNSLMNRLRLSSAPQNNRIWGNQALSHGHGVEVTPMLFPSVSKHQTAHPLQQNDTESLRQLQSEGIFFPFGLPSLRFFLPDGDASSTQEPM
        MASKLLIRTGNSLMNRLRLSS  QNN IW +Q+LS GHGV+VTPMLFPSVSKHQTAH LQQNDTESLR+L+SEGIFFPFGLPSLRFFLPDGD SSTQEPM
Subjt:  MASKLLIRTGNSLMNRLRLSSAPQNNRIWGNQALSHGHGVEVTPMLFPSVSKHQTAHPLQQNDTESLRQLQSEGIFFPFGLPSLRFFLPDGDASSTQEPM

Query:  LLFPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA
        LLFPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA
Subjt:  LLFPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA

XP_022980743.1 uncharacterized protein LOC111480019 isoform X2 [Cucurbita maxima]

3.0e-67

91.84

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Query:  MASKLLIRTGNSLMNRLRLSSAPQNNRIWGNQALSHGHGVEVTPMLFPSVSKHQTAHPLQQNDTESLRQLQSEGIFFPFGLPSLRFFLPDGDASSTQEPM
        MASKLLIRTGNSLMNRLRLSS  QNN IW +Q+LS GHGV+VTPMLFPSVSKHQTAH LQQNDTESLR+L+SEGIFFPFGLPSLRFFLPDGD SSTQEPM
Subjt:  MASKLLIRTGNSLMNRLRLSSAPQNNRIWGNQALSHGHGVEVTPMLFPSVSKHQTAHPLQQNDTESLRQLQSEGIFFPFGLPSLRFFLPDGDASSTQEPM

Query:  LLFPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA
        LLFPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA
Subjt:  LLFPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LIB6 Uncharacterized protein

1.3e-73

97.32

Show/hide

Query:  MLMASKLLIRTGNSLMNRLRLSSAPQNNRIWGNQALSHGHGVEVTPMLFPSVSKHQTAHPLQQNDTESLRQLQSEGIFFPFGLPSLRFFLPDGDASSTQE
        +LMASKLLIRTG+SLMNRLRLSSA QNNRIWG+QALSHGHGVEVTPMLFPSVSKHQTAHPLQQNDTESLRQLQSEGIFFPFGLPSLRFFLPDGDASSTQE
Subjt:  MLMASKLLIRTGNSLMNRLRLSSAPQNNRIWGNQALSHGHGVEVTPMLFPSVSKHQTAHPLQQNDTESLRQLQSEGIFFPFGLPSLRFFLPDGDASSTQE

Query:  PMLLFPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA
        PMLLFPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA
Subjt:  PMLLFPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA

A0A1S3BHV7 uncharacterized protein LOC103490028

1.5e-72

97.28

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Query:  MASKLLIRTGNSLMNRLRLSSAPQNNRIWGNQALSHGHGVEVTPMLFPSVSKHQTAHPLQQNDTESLRQLQSEGIFFPFGLPSLRFFLPDGDASSTQEPM
        MASKLLIRTGNS MNRLRLSSA QNNRIWG+QALSHGHGVEVTPMLFPSVSKHQ AHPLQQNDTESLRQLQSEGIFFPFGLPSLRFFLPDGDASSTQEPM
Subjt:  MASKLLIRTGNSLMNRLRLSSAPQNNRIWGNQALSHGHGVEVTPMLFPSVSKHQTAHPLQQNDTESLRQLQSEGIFFPFGLPSLRFFLPDGDASSTQEPM

Query:  LLFPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA
        LLFPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA
Subjt:  LLFPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA

A0A6J1DFJ1 uncharacterized protein LOC111020350

2.0e-64

85.71

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Query:  MASKLLIRTGNSLMNRLRLSSAPQNNRIWGNQALSHGHGVEVTPMLFPSVSKHQTAHPLQQNDTESLRQLQSEGIFFPFGLPSLRFFLPDGDASSTQEPM
        MASKLLIR GNS +NRLRL+S  Q++RIW +Q LSHGHGVEVTPMLFPSVSKHQT+H LQQND ESLR+L+SEG+FFPFGLPSLRFFLPDGDASS+QEPM
Subjt:  MASKLLIRTGNSLMNRLRLSSAPQNNRIWGNQALSHGHGVEVTPMLFPSVSKHQTAHPLQQNDTESLRQLQSEGIFFPFGLPSLRFFLPDGDASSTQEPM

Query:  LLFPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA
        LLFPKRTFQPS IRRKRNHGFFARKATKGGRKVI+RRIAKGRSR+TA
Subjt:  LLFPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA

A0A6J1GTQ0 uncharacterized protein LOC111457406 isoform X2

1.1e-67

91.84

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Query:  MASKLLIRTGNSLMNRLRLSSAPQNNRIWGNQALSHGHGVEVTPMLFPSVSKHQTAHPLQQNDTESLRQLQSEGIFFPFGLPSLRFFLPDGDASSTQEPM
        MASKLLIRTGNSLMNRLRLSS  QNN IW +Q+LS GHGV+VTPMLFPSVSKHQTAH LQQNDTESLR+L+SEGIFFPFGLPSLRFFLPDGD SSTQEPM
Subjt:  MASKLLIRTGNSLMNRLRLSSAPQNNRIWGNQALSHGHGVEVTPMLFPSVSKHQTAHPLQQNDTESLRQLQSEGIFFPFGLPSLRFFLPDGDASSTQEPM

Query:  LLFPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA
        LLFPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA
Subjt:  LLFPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA

A0A6J1IXD9 uncharacterized protein LOC111480019 isoform X2

1.4e-67

91.84

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Query:  MASKLLIRTGNSLMNRLRLSSAPQNNRIWGNQALSHGHGVEVTPMLFPSVSKHQTAHPLQQNDTESLRQLQSEGIFFPFGLPSLRFFLPDGDASSTQEPM
        MASKLLIRTGNSLMNRLRLSS  QNN IW +Q+LS GHGV+VTPMLFPSVSKHQTAH LQQNDTESLR+L+SEGIFFPFGLPSLRFFLPDGD SSTQEPM
Subjt:  MASKLLIRTGNSLMNRLRLSSAPQNNRIWGNQALSHGHGVEVTPMLFPSVSKHQTAHPLQQNDTESLRQLQSEGIFFPFGLPSLRFFLPDGDASSTQEPM

Query:  LLFPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA
        LLFPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA
Subjt:  LLFPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA

SwissProt top hits

e value

%identity

Alignment

A3QJT4 50S ribosomal protein L34

3.0e-09

74.42

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Query:  KRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA
        KRTFQPS ++RKR+HGF AR AT GGRKVIARR AKGR+R++A
Subjt:  KRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA

A8HAI3 50S ribosomal protein L34

3.0e-09

74.42

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Query:  KRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA
        KRTFQPS ++RKR+HGF AR AT GGRKVIARR AKGR+R++A
Subjt:  KRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA

B0TQH4 50S ribosomal protein L34

3.0e-09

74.42

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Query:  KRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA
        KRTFQPS ++RKR+HGF AR AT GGRKVIARR AKGR+R++A
Subjt:  KRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA

Q15MS4 50S ribosomal protein L34

3.0e-09

74.42

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Query:  KRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA
        KRTFQPS ++RKR+HGF AR ATK GRKVIA R AKGR+R+TA
Subjt:  KRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA

Q47U32 50S ribosomal protein L34

3.0e-09

74.42

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Query:  KRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA
        KRTFQPS ++RKRNHGF AR ATK GR VIARR AKGR+R++A
Subjt:  KRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA

Arabidopsis top hits

e value

%identity

Alignment

AT3G13882.1 Ribosomal protein L34

8.2e-39

59.6

Show/hide

Query:  MASKLLIRTGNSLMNRLRLSSAPQNNRIWGNQALSHGH----GVEVTPMLFPSVSKHQTAHPLQQNDTESLRQLQSEGIFFPFGLPSLRFFLPDGDASST
        MA+K LIR+G SLMN  R  + P  N +  N   S  +    G E+ P  FPS+S  Q++   + NDT SL++L   G  +P GLPSL FFLP+ D SS 
Subjt:  MASKLLIRTGNSLMNRLRLSSAPQNNRIWGNQALSHGH----GVEVTPMLFPSVSKHQTAHPLQQNDTESLRQLQSEGIFFPFGLPSLRFFLPDGDASST

Query:  QEPMLLFPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA
         EP+LLFPKRTFQPSTIRRKRNHGFFARKATKGGR+VIARRIAKGR R+TA
Subjt:  QEPMLLFPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA

AT3G13882.2 Ribosomal protein L34

1.0e-28

44.71

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Query:  PQNNRIWGNQALSHGHGVEVTPMLFPSVSKHQTAHPLQQNDTESLRQLQSEGIFFPFGLPSLRFFLP--------DGDASS-------------------
        P  N +  +       G E+ P  FPS+S  Q++   + NDT SL++L   G  +P GLPSL FFLP        D   SS                   
Subjt:  PQNNRIWGNQALSHGHGVEVTPMLFPSVSKHQTAHPLQQNDTESLRQLQSEGIFFPFGLPSLRFFLP--------DGDASS-------------------

Query:  ------------------TQEPMLLFPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA
                          + EP+LLFPKRTFQPSTIRRKRNHGFFARKATKGGR+VIARRIAKGR R+TA
Subjt:  ------------------TQEPMLLFPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA

Sequences

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CDS sequence

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ATGCTAATGGCGTCCAAACTTCTTATTCGTACGGGAAATTCTTTGATGAATCGATTGCGATTAAGCTCAGCGCCTCAGAATAACAGGATTTGGGGTAACCAAGCTCTGTC
CCATGGCCATGGCGTTGAAGTCACTCCGATGCTTTTTCCTTCAGTCTCTAAGCACCAGACTGCTCATCCTTTGCAGCAGAATGACACCGAATCGTTGAGGCAGCTCCAAT
CGGAAGGCATTTTCTTTCCTTTTGGGCTTCCGTCGCTCCGGTTCTTTTTGCCTGACGGAGATGCTTCTTCAACACAAGAACCGATGCTCTTATTTCCCAAAAGGACATTT
CAACCTAGCACCATCAGGCGAAAAAGGAATCATGGTTTTTTTGCTCGCAAAGCAACCAAGGGTGGACGGAAAGTCATTGCTCGAAGGATTGCAAAGGGGCGGTCAAGAAT
AACTGCATAA

mRNA sequence

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AATGTATCCTACGGTTCCTCGCACTTTTGTTCACTTCCCACCCGACCTTTGCCACAGCGCACACCGCCGCTAACCCACCGGGAATTTTCTTTCTTCTCCCTCGCTCTCCA
GCGGCAGCCACACCAACCTTACATTTTGCTGCACACTGTCACCAACCTCACTGCCACGCCCACCTTTGATTTCTAAGGGTTAGTGAGCTCGTTCTTATGCTAATGGCGTC
CAAACTTCTTATTCGTACGGGAAATTCTTTGATGAATCGATTGCGATTAAGCTCAGCGCCTCAGAATAACAGGATTTGGGGTAACCAAGCTCTGTCCCATGGCCATGGCG
TTGAAGTCACTCCGATGCTTTTTCCTTCAGTCTCTAAGCACCAGACTGCTCATCCTTTGCAGCAGAATGACACCGAATCGTTGAGGCAGCTCCAATCGGAAGGCATTTTC
TTTCCTTTTGGGCTTCCGTCGCTCCGGTTCTTTTTGCCTGACGGAGATGCTTCTTCAACACAAGAACCGATGCTCTTATTTCCCAAAAGGACATTTCAACCTAGCACCAT
CAGGCGAAAAAGGAATCATGGTTTTTTTGCTCGCAAAGCAACCAAGGGTGGACGGAAAGTCATTGCTCGAAGGATTGCAAAGGGGCGGTCAAGAATAACTGCATAATGTT
CCATCCCAAGTCAGGTCCATTTGAATTGCCCTGCCAATATCTTGTTGTGTTAGTTTTTTTAATTTAAAATTAACTCAATAGAATGGTATCACTGGCTGAATTATCCCCTT
TTGTCGGTTTTCTTCTTAGGCCTCGGAATACAGTTTGTATAAACTTCTGTTTTTAGAATTACCATGCATTAAACCTTCCATATTGAAGTTTCCGTTACTCTTAATCTTTA
TTTCTTTCTTAACTTAGCTAGAGAATAGTTTACTTTTGGTTCATGGTGGCTGTTGATGCTTGCTCCTGAGCAAATAAACAGAACTCAAGTCTGTGAAAGTTGCAAAAAGG
AAGAGGATGTGATTTTTTAAGTCATTTTAGGACTAAAATCGTTACTTATCCGAATTTCCTTTGGTTTTAATATTATTTTCTCATAAAAAATAAATTATAAATAGGCCAAA
TTGCAAAAACCACCTTCAAAGTATGGGTAGTACTTGTAAAGTTGCAATCACATGTCAAATTTCCAATTGTAAAAATTGAACCCTCGACTTGTATGATTGAAGAAATGG

Protein sequence

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MLMASKLLIRTGNSLMNRLRLSSAPQNNRIWGNQALSHGHGVEVTPMLFPSVSKHQTAHPLQQNDTESLRQLQSEGIFFPFGLPSLRFFLPDGDASSTQEPMLLFPKRTF
QPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA

PI0005147 (gene) of Melon (PI 482460) v1 genome