CuGenDBv2

Gene ID	PI0005157
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Reverse transcriptase domain-containing protein
Genome location	chr03:17376757..17377515
RNA-Seq Expression	PI0005157
Synteny	PI0005157
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004190 - aspartic-type endopeptidase activity (molecular function) GO:0004519 - endonuclease activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0037220.1 reverse transcriptase [Cucumis melo var. makuwa]

2.5e-98

74.41

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Query:  MSATKQMGKSHVDRSVEIEEQMLNLVEVSDAVRFLETRIQEISKKVDAIDAVTGRLDGLPISELLTRVDTLE--AKAVRTGNYERGDSSMGFVAYIEEWV
        MS++   GK+  DR VE+EEQML LVEV D++R+LE+R++EIS+K + IDAV GR++G PI EL+TRVD LE      RT NYERGDSS G VA+IEE V
Subjt:  MSATKQMGKSHVDRSVEIEEQMLNLVEVSDAVRFLETRIQEISKKVDAIDAVTGRLDGLPISELLTRVDTLE--AKAVRTGNYERGDSSMGFVAYIEEWV

Query:  SELDSSQKSIVEMINGMSEDFRATHDAVRNKIADVSTRVNLKMRAMANQAPAGGAMQVNRVKIPEPKPFCRARDAKALENYIFDLEQYFRATNTITEEAK
         ELDSSQK+++EMINGMSEDFRAT D VRN+IADV+ R++L MRAMANQAPAGGA+ V+RVKIPEPKPFC ARDAKALENYIFDLEQYFRATNT+TEEAK
Subjt:  SELDSSQKSIVEMINGMSEDFRATHDAVRNKIADVSTRVNLKMRAMANQAPAGGAMQVNRVKIPEPKPFCRARDAKALENYIFDLEQYFRATNTITEEAK

Query:  VTLATMHLVEDAKLWWRSRYVKIQEGRCTIDTWNSLKKELLSQFFLENVEILAR
        VTLATMHL EDAKLWWRSR+V IQEGRCTIDTW++LK+EL SQFF ENVEILAR
Subjt:  VTLATMHLVEDAKLWWRSRYVKIQEGRCTIDTWNSLKKELLSQFFLENVEILAR

KAA0063412.1 reverse transcriptase [Cucumis melo var. makuwa]

2.5e-98

74.41

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Query:  MSATKQMGKSHVDRSVEIEEQMLNLVEVSDAVRFLETRIQEISKKVDAIDAVTGRLDGLPISELLTRVDTLE--AKAVRTGNYERGDSSMGFVAYIEEWV
        MS++   GK+  DR VE+EEQML LVEV D++R+LE+R++EIS+K + IDAV GR++G PI EL+TRVD LE      RT NYERGDSS G VA+IEE V
Subjt:  MSATKQMGKSHVDRSVEIEEQMLNLVEVSDAVRFLETRIQEISKKVDAIDAVTGRLDGLPISELLTRVDTLE--AKAVRTGNYERGDSSMGFVAYIEEWV

Query:  SELDSSQKSIVEMINGMSEDFRATHDAVRNKIADVSTRVNLKMRAMANQAPAGGAMQVNRVKIPEPKPFCRARDAKALENYIFDLEQYFRATNTITEEAK
         ELDSSQK+++EMINGMSEDFRAT D VRN+IADV+ R++L MRAMANQAPAGGA+ V+RVKIPEPKPFC ARDAKALENYIFDLEQYFRATNT+TEEAK
Subjt:  SELDSSQKSIVEMINGMSEDFRATHDAVRNKIADVSTRVNLKMRAMANQAPAGGAMQVNRVKIPEPKPFCRARDAKALENYIFDLEQYFRATNTITEEAK

Query:  VTLATMHLVEDAKLWWRSRYVKIQEGRCTIDTWNSLKKELLSQFFLENVEILAR
        VTLATMHL EDAKLWWRSR+V IQEGRCTIDTW++LK+EL SQFF ENVEILAR
Subjt:  VTLATMHLVEDAKLWWRSRYVKIQEGRCTIDTWNSLKKELLSQFFLENVEILAR

TYK02231.1 reverse transcriptase [Cucumis melo var. makuwa]

2.5e-98

74.41

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Query:  MSATKQMGKSHVDRSVEIEEQMLNLVEVSDAVRFLETRIQEISKKVDAIDAVTGRLDGLPISELLTRVDTLE--AKAVRTGNYERGDSSMGFVAYIEEWV
        MS++   GK+  DR VE+EEQML LVEV D++R+LE+R++EIS+K + IDAV GR++G PI EL+TRVD LE      RT NYERGDSS G VA+IEE V
Subjt:  MSATKQMGKSHVDRSVEIEEQMLNLVEVSDAVRFLETRIQEISKKVDAIDAVTGRLDGLPISELLTRVDTLE--AKAVRTGNYERGDSSMGFVAYIEEWV

Query:  SELDSSQKSIVEMINGMSEDFRATHDAVRNKIADVSTRVNLKMRAMANQAPAGGAMQVNRVKIPEPKPFCRARDAKALENYIFDLEQYFRATNTITEEAK
         ELDSSQK+++EMINGMSEDFRAT D VRN+IADV+ R++L MRAMANQAPAGGA+ V+RVKIPEPKPFC ARDAKALENYIFDLEQYFRATNT+TEEAK
Subjt:  SELDSSQKSIVEMINGMSEDFRATHDAVRNKIADVSTRVNLKMRAMANQAPAGGAMQVNRVKIPEPKPFCRARDAKALENYIFDLEQYFRATNTITEEAK

Query:  VTLATMHLVEDAKLWWRSRYVKIQEGRCTIDTWNSLKKELLSQFFLENVEILAR
        VTLATMHL EDAKLWWRSR+V IQEGRCTIDTW++LK+EL SQFF ENVEILAR
Subjt:  VTLATMHLVEDAKLWWRSRYVKIQEGRCTIDTWNSLKKELLSQFFLENVEILAR

TYK03099.1 reverse transcriptase [Cucumis melo var. makuwa]

1.1e-98

74.41

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Query:  MSATKQMGKSHVDRSVEIEEQMLNLVEVSDAVRFLETRIQEISKKVDAIDAVTGRLDGLPISELLTRVDTLE--AKAVRTGNYERGDSSMGFVAYIEEWV
        MS++  +GK+  DR VE+EEQML LVEV D++R+LE+R++EIS+K + IDAV GR++G PI EL+TRVD LE      RT NYERGDSS G VA+IEE V
Subjt:  MSATKQMGKSHVDRSVEIEEQMLNLVEVSDAVRFLETRIQEISKKVDAIDAVTGRLDGLPISELLTRVDTLE--AKAVRTGNYERGDSSMGFVAYIEEWV

Query:  SELDSSQKSIVEMINGMSEDFRATHDAVRNKIADVSTRVNLKMRAMANQAPAGGAMQVNRVKIPEPKPFCRARDAKALENYIFDLEQYFRATNTITEEAK
         ELDSSQK+++EMINGMSEDFRAT D VRN+IADV+ R++L MRAMANQAPAGGA+ V+RVKIPEPKPFC ARDAKALENYIFDLEQYFRATNT+TEEAK
Subjt:  SELDSSQKSIVEMINGMSEDFRATHDAVRNKIADVSTRVNLKMRAMANQAPAGGAMQVNRVKIPEPKPFCRARDAKALENYIFDLEQYFRATNTITEEAK

Query:  VTLATMHLVEDAKLWWRSRYVKIQEGRCTIDTWNSLKKELLSQFFLENVEILAR
        VTLATMHL EDAKLWWRSR+V IQEGRCTIDTW++LK+EL SQFF ENVEILAR
Subjt:  VTLATMHLVEDAKLWWRSRYVKIQEGRCTIDTWNSLKKELLSQFFLENVEILAR

TYK28713.1 reverse transcriptase [Cucumis melo var. makuwa]

2.5e-98

74.41

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Query:  MSATKQMGKSHVDRSVEIEEQMLNLVEVSDAVRFLETRIQEISKKVDAIDAVTGRLDGLPISELLTRVDTLEA--KAVRTGNYERGDSSMGFVAYIEEWV
        MS++   GK+  DR VE+EEQML LVEV D++R+LE+R++EIS+K + IDAV GR++G PI EL+TRVD LE      RT NYERGDSS G VA+IEE V
Subjt:  MSATKQMGKSHVDRSVEIEEQMLNLVEVSDAVRFLETRIQEISKKVDAIDAVTGRLDGLPISELLTRVDTLEA--KAVRTGNYERGDSSMGFVAYIEEWV

Query:  SELDSSQKSIVEMINGMSEDFRATHDAVRNKIADVSTRVNLKMRAMANQAPAGGAMQVNRVKIPEPKPFCRARDAKALENYIFDLEQYFRATNTITEEAK
         ELDSSQK+++EMINGMSEDFRAT D VRN+IADV+ R++L MRAMANQAPAGGA+ V+RVKIPEPKPFC ARDAKALENYIFDLEQYFRATNT+TEEAK
Subjt:  SELDSSQKSIVEMINGMSEDFRATHDAVRNKIADVSTRVNLKMRAMANQAPAGGAMQVNRVKIPEPKPFCRARDAKALENYIFDLEQYFRATNTITEEAK

Query:  VTLATMHLVEDAKLWWRSRYVKIQEGRCTIDTWNSLKKELLSQFFLENVEILAR
        VTLATMHL EDAKLWWRSR+V IQEGRCTIDTW++LK+EL SQFF ENVEILAR
Subjt:  VTLATMHLVEDAKLWWRSRYVKIQEGRCTIDTWNSLKKELLSQFFLENVEILAR

TrEMBL top hits

e value

%identity

Alignment

A0A5A7T0E2 Reverse transcriptase

1.2e-98

74.41

Show/hide

Query:  MSATKQMGKSHVDRSVEIEEQMLNLVEVSDAVRFLETRIQEISKKVDAIDAVTGRLDGLPISELLTRVDTLE--AKAVRTGNYERGDSSMGFVAYIEEWV
        MS++   GK+  DR VE+EEQML LVEV D++R+LE+R++EIS+K + IDAV GR++G PI EL+TRVD LE      RT NYERGDSS G VA+IEE V
Subjt:  MSATKQMGKSHVDRSVEIEEQMLNLVEVSDAVRFLETRIQEISKKVDAIDAVTGRLDGLPISELLTRVDTLE--AKAVRTGNYERGDSSMGFVAYIEEWV

Query:  SELDSSQKSIVEMINGMSEDFRATHDAVRNKIADVSTRVNLKMRAMANQAPAGGAMQVNRVKIPEPKPFCRARDAKALENYIFDLEQYFRATNTITEEAK
         ELDSSQK+++EMINGMSEDFRAT D VRN+IADV+ R++L MRAMANQAPAGGA+ V+RVKIPEPKPFC ARDAKALENYIFDLEQYFRATNT+TEEAK
Subjt:  SELDSSQKSIVEMINGMSEDFRATHDAVRNKIADVSTRVNLKMRAMANQAPAGGAMQVNRVKIPEPKPFCRARDAKALENYIFDLEQYFRATNTITEEAK

Query:  VTLATMHLVEDAKLWWRSRYVKIQEGRCTIDTWNSLKKELLSQFFLENVEILAR
        VTLATMHL EDAKLWWRSR+V IQEGRCTIDTW++LK+EL SQFF ENVEILAR
Subjt:  VTLATMHLVEDAKLWWRSRYVKIQEGRCTIDTWNSLKKELLSQFFLENVEILAR

A0A5D3BRZ6 Reverse transcriptase

1.2e-98

74.41

Show/hide

Query:  MSATKQMGKSHVDRSVEIEEQMLNLVEVSDAVRFLETRIQEISKKVDAIDAVTGRLDGLPISELLTRVDTLE--AKAVRTGNYERGDSSMGFVAYIEEWV
        MS++   GK+  DR VE+EEQML LVEV D++R+LE+R++EIS+K + IDAV GR++G PI EL+TRVD LE      RT NYERGDSS G VA+IEE V
Subjt:  MSATKQMGKSHVDRSVEIEEQMLNLVEVSDAVRFLETRIQEISKKVDAIDAVTGRLDGLPISELLTRVDTLE--AKAVRTGNYERGDSSMGFVAYIEEWV

Query:  SELDSSQKSIVEMINGMSEDFRATHDAVRNKIADVSTRVNLKMRAMANQAPAGGAMQVNRVKIPEPKPFCRARDAKALENYIFDLEQYFRATNTITEEAK
         ELDSSQK+++EMINGMSEDFRAT D VRN+IADV+ R++L MRAMANQAPAGGA+ V+RVKIPEPKPFC ARDAKALENYIFDLEQYFRATNT+TEEAK
Subjt:  SELDSSQKSIVEMINGMSEDFRATHDAVRNKIADVSTRVNLKMRAMANQAPAGGAMQVNRVKIPEPKPFCRARDAKALENYIFDLEQYFRATNTITEEAK

Query:  VTLATMHLVEDAKLWWRSRYVKIQEGRCTIDTWNSLKKELLSQFFLENVEILAR
        VTLATMHL EDAKLWWRSR+V IQEGRCTIDTW++LK+EL SQFF ENVEILAR
Subjt:  VTLATMHLVEDAKLWWRSRYVKIQEGRCTIDTWNSLKKELLSQFFLENVEILAR

A0A5D3BYE6 Reverse transcriptase

5.4e-99

74.41

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Query:  MSATKQMGKSHVDRSVEIEEQMLNLVEVSDAVRFLETRIQEISKKVDAIDAVTGRLDGLPISELLTRVDTLE--AKAVRTGNYERGDSSMGFVAYIEEWV
        MS++  +GK+  DR VE+EEQML LVEV D++R+LE+R++EIS+K + IDAV GR++G PI EL+TRVD LE      RT NYERGDSS G VA+IEE V
Subjt:  MSATKQMGKSHVDRSVEIEEQMLNLVEVSDAVRFLETRIQEISKKVDAIDAVTGRLDGLPISELLTRVDTLE--AKAVRTGNYERGDSSMGFVAYIEEWV

Query:  SELDSSQKSIVEMINGMSEDFRATHDAVRNKIADVSTRVNLKMRAMANQAPAGGAMQVNRVKIPEPKPFCRARDAKALENYIFDLEQYFRATNTITEEAK
         ELDSSQK+++EMINGMSEDFRAT D VRN+IADV+ R++L MRAMANQAPAGGA+ V+RVKIPEPKPFC ARDAKALENYIFDLEQYFRATNT+TEEAK
Subjt:  SELDSSQKSIVEMINGMSEDFRATHDAVRNKIADVSTRVNLKMRAMANQAPAGGAMQVNRVKIPEPKPFCRARDAKALENYIFDLEQYFRATNTITEEAK

Query:  VTLATMHLVEDAKLWWRSRYVKIQEGRCTIDTWNSLKKELLSQFFLENVEILAR
        VTLATMHL EDAKLWWRSR+V IQEGRCTIDTW++LK+EL SQFF ENVEILAR
Subjt:  VTLATMHLVEDAKLWWRSRYVKIQEGRCTIDTWNSLKKELLSQFFLENVEILAR

A0A5D3C4R1 Reverse transcriptase

1.2e-98

74.41

Show/hide

Query:  MSATKQMGKSHVDRSVEIEEQMLNLVEVSDAVRFLETRIQEISKKVDAIDAVTGRLDGLPISELLTRVDTLE--AKAVRTGNYERGDSSMGFVAYIEEWV
        MS++   GK+  DR VE+EEQML LVEV D++R+LE+R++EIS+K + IDAV GR++G PI EL+TRVD LE      RT NYERGDSS G VA+IEE V
Subjt:  MSATKQMGKSHVDRSVEIEEQMLNLVEVSDAVRFLETRIQEISKKVDAIDAVTGRLDGLPISELLTRVDTLE--AKAVRTGNYERGDSSMGFVAYIEEWV

Query:  SELDSSQKSIVEMINGMSEDFRATHDAVRNKIADVSTRVNLKMRAMANQAPAGGAMQVNRVKIPEPKPFCRARDAKALENYIFDLEQYFRATNTITEEAK
         ELDSSQK+++EMINGMSEDFRAT D VRN+IADV+ R++L MRAMANQAPAGGA+ V+RVKIPEPKPFC ARDAKALENYIFDLEQYFRATNT+TEEAK
Subjt:  SELDSSQKSIVEMINGMSEDFRATHDAVRNKIADVSTRVNLKMRAMANQAPAGGAMQVNRVKIPEPKPFCRARDAKALENYIFDLEQYFRATNTITEEAK

Query:  VTLATMHLVEDAKLWWRSRYVKIQEGRCTIDTWNSLKKELLSQFFLENVEILAR
        VTLATMHL EDAKLWWRSR+V IQEGRCTIDTW++LK+EL SQFF ENVEILAR
Subjt:  VTLATMHLVEDAKLWWRSRYVKIQEGRCTIDTWNSLKKELLSQFFLENVEILAR

A0A5D3DQ20 Retrotrans_gag domain-containing protein

1.2e-98

74.41

Show/hide

Query:  MSATKQMGKSHVDRSVEIEEQMLNLVEVSDAVRFLETRIQEISKKVDAIDAVTGRLDGLPISELLTRVDTLE--AKAVRTGNYERGDSSMGFVAYIEEWV
        MS++   GK+  DR VE+EEQML LVEV D++R+LE+R++EIS+K + IDAV GR++G PI EL+TRVD LE      RT NYERGDSS G VA+IEE V
Subjt:  MSATKQMGKSHVDRSVEIEEQMLNLVEVSDAVRFLETRIQEISKKVDAIDAVTGRLDGLPISELLTRVDTLE--AKAVRTGNYERGDSSMGFVAYIEEWV

Query:  SELDSSQKSIVEMINGMSEDFRATHDAVRNKIADVSTRVNLKMRAMANQAPAGGAMQVNRVKIPEPKPFCRARDAKALENYIFDLEQYFRATNTITEEAK
         ELDSSQK+++EMINGMSEDFRAT D VRN+IADV+ R++L MRAMANQAPAGGA+ V+RVKIPEPKPFC ARDAKALENYIFDLEQYFRATNT+TEEAK
Subjt:  SELDSSQKSIVEMINGMSEDFRATHDAVRNKIADVSTRVNLKMRAMANQAPAGGAMQVNRVKIPEPKPFCRARDAKALENYIFDLEQYFRATNTITEEAK

Query:  VTLATMHLVEDAKLWWRSRYVKIQEGRCTIDTWNSLKKELLSQFFLENVEILAR
        VTLATMHL EDAKLWWRSR+V IQEGRCTIDTW++LK+EL SQFF ENVEILAR
Subjt:  VTLATMHLVEDAKLWWRSRYVKIQEGRCTIDTWNSLKKELLSQFFLENVEILAR

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

Show/hide CDS sequence

ATGTCTGCAACGAAACAGATGGGCAAGTCCCATGTAGACCGATCGGTAGAGATTGAAGAGCAGATGCTCAACCTAGTGGAAGTTTCGGACGCTGTTCGCTTCTTGGAAAC
CCGTATTCAAGAAATTTCCAAGAAAGTCGACGCTATTGATGCGGTAACCGGTCGCCTCGATGGATTACCTATAAGTGAGCTATTGACAAGAGTTGACACTCTAGAGGCAA
AAGCTGTAAGAACTGGTAACTACGAGCGTGGGGACAGTTCAATGGGCTTTGTTGCCTACATAGAAGAATGGGTTAGCGAGCTAGATAGCTCTCAAAAGTCGATTGTGGAG
ATGATAAATGGCATGTCAGAGGATTTTCGTGCCACTCACGACGCCGTCAGGAATAAGATTGCAGACGTGAGCACGAGGGTGAATCTCAAGATGCGAGCCATGGCAAACCA
AGCTCCAGCTGGAGGAGCAATGCAAGTTAACAGAGTGAAGATCCCTGAACCCAAACCCTTTTGTAGGGCAAGGGATGCAAAAGCCTTGGAAAACTACATCTTTGATCTCG
AACAATACTTCCGGGCCACGAACACAATTACAGAAGAAGCGAAAGTGACACTAGCAACGATGCATCTAGTTGAGGATGCAAAGTTGTGGTGGAGGTCCCGGTATGTCAAG
ATCCAAGAAGGACGGTGTACGATAGACACTTGGAACAGTTTGAAGAAAGAACTACTCTCACAGTTCTTCCTCGAGAACGTTGAAATCCTTGCTCGATGA

mRNA sequence

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Protein sequence

Show/hide protein sequence

MSATKQMGKSHVDRSVEIEEQMLNLVEVSDAVRFLETRIQEISKKVDAIDAVTGRLDGLPISELLTRVDTLEAKAVRTGNYERGDSSMGFVAYIEEWVSELDSSQKSIVE
MINGMSEDFRATHDAVRNKIADVSTRVNLKMRAMANQAPAGGAMQVNRVKIPEPKPFCRARDAKALENYIFDLEQYFRATNTITEEAKVTLATMHLVEDAKLWWRSRYVK
IQEGRCTIDTWNSLKKELLSQFFLENVEILAR

PI0005157 (gene) of Melon (PI 482460) v1 genome