CuGenDBv2

Gene ID	PI0005162
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Gag/pol protein
Genome location	chr08:4002269..4007373
RNA-Seq Expression	PI0005162
Synteny	PI0005162
Gene Ontology terms	GO:0006807 - nitrogen compound metabolic process (biological process) GO:0043170 - macromolecule metabolic process (biological process) GO:0044238 - primary metabolic process (biological process) GO:0005488 - binding (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0044955.1 gag/pol protein [Cucumis melo var. makuwa]

1.1e-58

65.69

Show/hide

Query:  MEECPPSPVRNASQTVRDAHDRWTKANEKTRVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQF
        +EECP  P  NA++TVR+ ++RW KANEK R YILAS+S+VL+KKHESM+TAR+IMDSLQEMFGQ S QI+H+A+KY+YNARM EG SVREHVL+MMV F
Subjt:  MEECPPSPVRNASQTVRDAHDRWTKANEKTRVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQF

Query:  NVAETNG-----------------RSLTSKVSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKKIQKKK
        NVAE NG                  S     SNAVMNKI YT+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS+SGTKS PSSSG KK +KKK
Subjt:  NVAETNG-----------------RSLTSKVSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKKIQKKK

Query:  GGKG
        GG+G
Subjt:  GGKG

KAA0048404.1 gag/pol protein [Cucumis melo var. makuwa]

1.1e-58

65.69

Show/hide

Query:  MEECPPSPVRNASQTVRDAHDRWTKANEKTRVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQF
        +EECP  P  NA++TVR+ ++RW KANEK R YILAS+S+VL+KKHESM+TAR+IMDSLQEMFGQ S QI+H+A+KY+YNARM EG SVREHVL+MMV F
Subjt:  MEECPPSPVRNASQTVRDAHDRWTKANEKTRVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQF

Query:  NVAETNG-----------------RSLTSKVSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKKIQKKK
        NVAE NG                  S     SNAVMNKI YT+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS+SGTKS PSSSG KK +KKK
Subjt:  NVAETNG-----------------RSLTSKVSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKKIQKKK

Query:  GGKG
        GG+G
Subjt:  GGKG

KAA0054490.1 gag/pol protein [Cucumis melo var. makuwa]

1.1e-58

65.69

Show/hide

Query:  MEECPPSPVRNASQTVRDAHDRWTKANEKTRVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQF
        +EECP  P  NA++TVR+ ++RW KANEK R YILAS+S+VL+KKHESM+TAR+IMDSLQEMFGQ S QI+H+A+KY+YNARM EG SVREHVL+MMV F
Subjt:  MEECPPSPVRNASQTVRDAHDRWTKANEKTRVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQF

Query:  NVAETNG-----------------RSLTSKVSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKKIQKKK
        NVAE NG                  S     SNAVMNKI YT+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS+SGTKS PSSSG KK +KKK
Subjt:  NVAETNG-----------------RSLTSKVSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKKIQKKK

Query:  GGKG
        GG+G
Subjt:  GGKG

KAA0061339.1 gag/pol protein [Cucumis melo var. makuwa]

1.1e-58

65.69

Show/hide

Query:  MEECPPSPVRNASQTVRDAHDRWTKANEKTRVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQF
        +EECP  P  NA+QTVR+ ++RW KANEK R YILAS+S+VL+KKHESM+TAR+IMDSLQEMFGQ S QI+H+A+KY+YNARM EG SVREHVL++MV F
Subjt:  MEECPPSPVRNASQTVRDAHDRWTKANEKTRVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQF

Query:  NVAETNG-----------------RSLTSKVSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKKIQKKK
        NVAE NG                  S     SNAVMNKI YT+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS+SGTKS PSSSG KK +KKK
Subjt:  NVAETNG-----------------RSLTSKVSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKKIQKKK

Query:  GGKG
        GG+G
Subjt:  GGKG

TYK14550.1 gag/pol protein [Cucumis melo var. makuwa]

1.1e-58

65.69

Show/hide

Query:  MEECPPSPVRNASQTVRDAHDRWTKANEKTRVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQF
        +EECP  P  NA++TVR+ ++RW KANEK R YILAS+S+VL+KKHESM+TAR+IMDSLQEMFGQ S QI+H+A+KY+YNARM EG SVREHVL+MMV F
Subjt:  MEECPPSPVRNASQTVRDAHDRWTKANEKTRVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQF

Query:  NVAETNG-----------------RSLTSKVSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKKIQKKK
        NVAE NG                  S     SNAVMNKI YT+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS+SGTKS PSSSG KK +KKK
Subjt:  NVAETNG-----------------RSLTSKVSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKKIQKKK

Query:  GGKG
        GG+G
Subjt:  GGKG

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SMH8 Gag/pol protein

5.5e-59

65.69

Show/hide

Query:  MEECPPSPVRNASQTVRDAHDRWTKANEKTRVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQF
        +EECP  P  NA++TVR+ ++RW KANEK R YILAS+S+VL+KKHESM+TAR+IMDSLQEMFGQ S QI+H+A+KY+YNARM EG SVREHVL+MMV F
Subjt:  MEECPPSPVRNASQTVRDAHDRWTKANEKTRVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQF

Query:  NVAETNG-----------------RSLTSKVSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKKIQKKK
        NVAE NG                  S     SNAVMNKI YT+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS+SGTKS PSSSG KK +KKK
Subjt:  NVAETNG-----------------RSLTSKVSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKKIQKKK

Query:  GGKG
        GG+G
Subjt:  GGKG

A0A5A7TU93 Gag/pol protein

5.5e-59

65.69

Show/hide

Query:  MEECPPSPVRNASQTVRDAHDRWTKANEKTRVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQF
        +EECP  P  NA++TVR+ ++RW KANEK R YILAS+S+VL+KKHESM+TAR+IMDSLQEMFGQ S QI+H+A+KY+YNARM EG SVREHVL+MMV F
Subjt:  MEECPPSPVRNASQTVRDAHDRWTKANEKTRVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQF

Query:  NVAETNG-----------------RSLTSKVSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKKIQKKK
        NVAE NG                  S     SNAVMNKI YT+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS+SGTKS PSSSG KK +KKK
Subjt:  NVAETNG-----------------RSLTSKVSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKKIQKKK

Query:  GGKG
        GG+G
Subjt:  GGKG

A0A5A7TWB9 Gag/pol protein

5.5e-59

65.69

Show/hide

Query:  MEECPPSPVRNASQTVRDAHDRWTKANEKTRVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQF
        +EECP  P  NA++TVR+ ++RW KANEK R YILAS+S+VL+KKHESM+TAR+IMDSLQEMFGQ S QI+H+A+KY+YNARM EG SVREHVL+MMV F
Subjt:  MEECPPSPVRNASQTVRDAHDRWTKANEKTRVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQF

Query:  NVAETNG-----------------RSLTSKVSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKKIQKKK
        NVAE NG                  S     SNAVMNKI YT+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS+SGTKS PSSSG KK +KKK
Subjt:  NVAETNG-----------------RSLTSKVSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKKIQKKK

Query:  GGKG
        GG+G
Subjt:  GGKG

A0A5A7V6N0 Gag/pol protein

5.5e-59

65.69

Show/hide

Query:  MEECPPSPVRNASQTVRDAHDRWTKANEKTRVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQF
        +EECP  P  NA+QTVR+ ++RW KANEK R YILAS+S+VL+KKHESM+TAR+IMDSLQEMFGQ S QI+H+A+KY+YNARM EG SVREHVL++MV F
Subjt:  MEECPPSPVRNASQTVRDAHDRWTKANEKTRVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQF

Query:  NVAETNG-----------------RSLTSKVSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKKIQKKK
        NVAE NG                  S     SNAVMNKI YT+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS+SGTKS PSSSG KK +KKK
Subjt:  NVAETNG-----------------RSLTSKVSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKKIQKKK

Query:  GGKG
        GG+G
Subjt:  GGKG

A0A5D3CPJ6 Gag/pol protein

5.5e-59

65.69

Show/hide

Query:  MEECPPSPVRNASQTVRDAHDRWTKANEKTRVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQF
        +EECP  P  NA++TVR+ ++RW KANEK R YILAS+S+VL+KKHESM+TAR+IMDSLQEMFGQ S QI+H+A+KY+YNARM EG SVREHVL+MMV F
Subjt:  MEECPPSPVRNASQTVRDAHDRWTKANEKTRVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQF

Query:  NVAETNG-----------------RSLTSKVSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKKIQKKK
        NVAE NG                  S     SNAVMNKI YT+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS+SGTKS PSSSG KK +KKK
Subjt:  NVAETNG-----------------RSLTSKVSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKKIQKKK

Query:  GGKG
        GG+G
Subjt:  GGKG

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGAGGAATGTCCTCCTTCCCCTGTTCGAAATGCATCCCAGACCGTCAGGGATGCACATGACCGCTGGACAAAGGCCAATGAAAAGACCCGAGTCTACATCTTGGCCAG
TATGTCTGACGTACTGAGCAAGAAACATGAGTCCATGGTCACTGCACGTCAGATCATGGACTCCCTCCAGGAGATGTTTGGACAACCGTCCATTCAAATCCGGCACGAGG
CTATTAAATACGTTTATAATGCCCGTATGAAGGAAGGCCAATCTGTTAGAGAACATGTTCTCGACATGATGGTCCAATTCAACGTGGCAGAAACGAACGGGCGGTCATTG
ACGAGCAAAGTCAGCAATGCGGTTATGAACAAGATAGAGTATACCATGACTACCCTCCTTAACGAGTTGCAGACTTTTCAGTCTCTTATGAAAAATAAGGGACAGAAAGA
AGGAGAGGCAAATGTTGCCCATTCCAAGAGGTTTCAGAAGGGTTCATCCTCTGGAACCAAGTCTGCACCTTCATCTTCTGGGACTAAGAAAATCCAGAAGAAGAAAGGAG
GAAAGGGGAAAGGTCCATTAGGTCCCCTTCCTAGCTCGTAA

mRNA sequence

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Protein sequence

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MEECPPSPVRNASQTVRDAHDRWTKANEKTRVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGRSL
TSKVSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHSKRFQKGSSSGTKSAPSSSGTKKIQKKKGGKGKGPLGPLPSS

PI0005162 (gene) of Melon (PI 482460) v1 genome