CuGenDBv2

Gene ID	PI0005169
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Histone H3
Genome location	chr03:2605465..2606799
RNA-Seq Expression	PI0005169
Synteny	PI0005169
Gene Ontology terms	GO:0000786 - nucleosome (cellular component) GO:0005634 - nucleus (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0003677 - DNA binding (molecular function) GO:0046982 - protein heterodimerization activity (molecular function)
InterPro domains	IPR000164 - Histone H3/CENP-A IPR007125 - Histone H2A/H2B/H3 IPR009072 - Histone-fold

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

AAB03538.1 histone H3, partial [Glycine max]

2.5e-48

100

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Query:  MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAY
        MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAY
Subjt:  MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAY

Query:  LVGLFEDT
        LVGLFEDT
Subjt:  LVGLFEDT

GFY87403.1 histone superfamily protein [Actinidia rufa]

2.5e-48

100

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Query:  MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAY
        MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAY
Subjt:  MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAY

Query:  LVGLFEDT
        LVGLFEDT
Subjt:  LVGLFEDT

KAF9612072.1 hypothetical protein IFM89_037991 [Coptis chinensis]

2.5e-48

100

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Query:  MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAY
        MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAY
Subjt:  MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAY

Query:  LVGLFEDT
        LVGLFEDT
Subjt:  LVGLFEDT

KAG6598700.1 hypothetical protein SDJN03_08478, partial [Cucurbita argyrosperma subsp. sororia]

2.5e-48

100

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Query:  MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAY
        MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAY
Subjt:  MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAY

Query:  LVGLFEDT
        LVGLFEDT
Subjt:  LVGLFEDT

XP_039807871.1 histone H3.3-like [Panicum virgatum]

2.5e-48

100

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Query:  MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAY
        MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAY
Subjt:  MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAY

Query:  LVGLFEDT
        LVGLFEDT
Subjt:  LVGLFEDT

TrEMBL top hits

e value

%identity

Alignment

A0A0V0RDG7 Histone H3

1.2e-48

100

Show/hide

Query:  MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAY
        MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAY
Subjt:  MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAY

Query:  LVGLFEDT
        LVGLFEDT
Subjt:  LVGLFEDT

A0A5D2HEA1 Histone H3

1.2e-48

100

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Query:  MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAY
        MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAY
Subjt:  MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAY

Query:  LVGLFEDT
        LVGLFEDT
Subjt:  LVGLFEDT

A0A6J1J540 Histone H3

1.2e-48

100

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Query:  MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAY
        MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAY
Subjt:  MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAY

Query:  LVGLFEDT
        LVGLFEDT
Subjt:  LVGLFEDT

A0A7S0JMT0 Hypothetical protein

1.2e-48

100

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Query:  MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAY
        MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAY
Subjt:  MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAY

Query:  LVGLFEDT
        LVGLFEDT
Subjt:  LVGLFEDT

Q6LB28 Histone H3

1.2e-48

100

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Query:  MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAY
        MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAY
Subjt:  MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAY

Query:  LVGLFEDT
        LVGLFEDT
Subjt:  LVGLFEDT

SwissProt top hits

e value

%identity

Alignment

P59169 Histone H3.3

3.3e-51

100

Show/hide

Query:  MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAY
        MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAY
Subjt:  MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAY

Query:  LVGLFEDT
        LVGLFEDT
Subjt:  LVGLFEDT

P69245 Histone H3.3

3.3e-51

100

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Query:  MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAY
        MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAY
Subjt:  MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAY

Query:  LVGLFEDT
        LVGLFEDT
Subjt:  LVGLFEDT

Q3C2E5 Histone H3.3

3.3e-51

100

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Query:  MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAY
        MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAY
Subjt:  MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAY

Query:  LVGLFEDT
        LVGLFEDT
Subjt:  LVGLFEDT

Q6RUR1 Histone H3.3

3.3e-51

100

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Query:  MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAY
        MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAY
Subjt:  MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAY

Query:  LVGLFEDT
        LVGLFEDT
Subjt:  LVGLFEDT

Q71V89 Histone H3.3

3.3e-51

100

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Query:  MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAY
        MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAY
Subjt:  MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAY

Query:  LVGLFEDT
        LVGLFEDT
Subjt:  LVGLFEDT

Arabidopsis top hits

e value

%identity

Alignment

AT4G40030.1 Histone superfamily protein

2.3e-52

100

Show/hide

Query:  MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAY
        MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAY
Subjt:  MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAY

Query:  LVGLFEDT
        LVGLFEDT
Subjt:  LVGLFEDT

AT4G40030.2 Histone superfamily protein

2.3e-52

100

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Query:  MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAY
        MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAY
Subjt:  MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAY

Query:  LVGLFEDT
        LVGLFEDT
Subjt:  LVGLFEDT

AT4G40030.3 Histone superfamily protein

2.3e-52

100

Show/hide

Query:  MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAY
        MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAY
Subjt:  MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAY

Query:  LVGLFEDT
        LVGLFEDT
Subjt:  LVGLFEDT

AT4G40040.1 Histone superfamily protein

2.3e-52

100

Show/hide

Query:  MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAY
        MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAY
Subjt:  MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAY

Query:  LVGLFEDT
        LVGLFEDT
Subjt:  LVGLFEDT

AT4G40040.2 Histone superfamily protein

2.3e-52

100

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Query:  MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAY
        MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAY
Subjt:  MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAY

Query:  LVGLFEDT
        LVGLFEDT
Subjt:  LVGLFEDT

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCTCGTACGAAGCAAACTGCTCGCAAATCTACAGGAGGGAAGGCTCCTAGAAAGCAGCTTGCTACTAAGGCTGCGCGTAAGTCAGCTCCCACAACTGGAGGCGTGAA
GAAACCACACAGATACCGCCCAGGAACAGTCGCTCTTCGAGAAATCCGCAAGTACCAGAAGAGTACAGAGCTTCTAATTCGCAAACTTCCATTCCAGAGGCTTGTTCGTG
AAATTGCACAGGATTTCAAGACAGATCTGCGTTTCCAGAGCCATGCGGTTTTGGCATTGCAAGAGGCTGCTGAAGCTTATCTTGTTGGGTTGTTTGAGGATACCATCTCT
GTGCCATTCATGCTAAGCGTGTTACAATAA

mRNA sequence

Show/hide mRNA sequence

CAAAGAAGCACAGTGAATGTCAATCGTGTCCATCCGCCGCCATACCGCACAGCCTTCGTCCGACCGGAAGCTCCTATATAAAGTCCTTTGGTTTCCAAATTTCTACTTCA
TTCGCTTTTGAAAGATTTCCCAATCTCTTCGTCGACGAAAATTTTCTCTCGCTTCTCAACCCTTCTTCCTCTTCCTCATCCAGATGGCTCGTACGAAGCAAACTGCTCGC
AAATCTACAGGAGGGAAGGCTCCTAGAAAGCAGCTTGCTACTAAGGCTGCGCGTAAGTCAGCTCCCACAACTGGAGGCGTGAAGAAACCACACAGATACCGCCCAGGAAC
AGTCGCTCTTCGAGAAATCCGCAAGTACCAGAAGAGTACAGAGCTTCTAATTCGCAAACTTCCATTCCAGAGGCTTGTTCGTGAAATTGCACAGGATTTCAAGACAGATC
TGCGTTTCCAGAGCCATGCGGTTTTGGCATTGCAAGAGGCTGCTGAAGCTTATCTTGTTGGGTTGTTTGAGGATACCATCTCTGTGCCATTCATGCTAAGCGTGTTACAA
TAATGCCAAAAGATATCCAACTTGCCAGAAGAATCCGCGGAGAGAGAGCTTAAATCCAGCTTCATCTAAAGATTAGACTATGCGTCAAATATAATTTTTTTTTCTTTTTT
CTTTCGAATTGCAATCTATGTGTAAATTGTGTTTTGCTTCAATAAACACAATCTTACTTTTACTTCCATGAACACTATTATTGGTTTCAAATTACATCGTTTGTTCATTA
TTGTTATGTGAAATTCAATATGCCTACTTTGTCAAA

Protein sequence

Show/hide protein sequence

MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTIS
VPFMLSVLQ

PI0005169 (gene) of Melon (PI 482460) v1 genome