CuGenDBv2

Gene ID	PI0005253
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	F-box protein GID2-like
Genome location	chr03:1137788..1138213
RNA-Seq Expression	PI0005253
Synteny	PI0005253
Gene Ontology terms	GO:0009740 - gibberellic acid mediated signaling pathway (biological process) GO:0031146 - SCF-dependent proteasomal ubiquitin-dependent protein catabolic process (biological process) GO:0019005 - SCF ubiquitin ligase complex (cellular component) GO:0005515 - protein binding (molecular function)
InterPro domains	IPR001810 - F-box domain IPR036047 - F-box-like domain superfamily IPR045118 - F-box only protein FBXO9/FBXO48

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6598351.1 F-box protein GID2, partial [Cucurbita argyrosperma subsp. sororia]

6.3e-59

82.86

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Query:  IKKFKSDSNQQEPDQSQPQPSTFANLDDNLLFEVFKHVDARTLATAAGVSKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHSLYPF
        +KK KS S +Q+     P  S FANLDDNLLFEVFKHVDARTLATAAGVSKQW+KTAHDE LWELLCTKHW N+GCANQQLRSVVLALGGFRRLHSLYPF
Subjt:  IKKFKSDSNQQEPDQSQPQPSTFANLDDNLLFEVFKHVDARTLATAAGVSKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHSLYPF

Query:  PPMIG---CNPWGKDEVHLSLSLLSIRYYEKMKFKNRPTS
        PP+IG   C PWGKDE+HLSLSLLSIRYYEKMKFKNRPTS
Subjt:  PPMIG---CNPWGKDEVHLSLSLLSIRYYEKMKFKNRPTS

XP_004143017.1 F-box protein GID2 [Cucumis sativus]

2.6e-73

96.48

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Query:  MNNKIKKFKSDSNQQEPDQSQPQPSTFANLDDNLLFEVFKHVDARTLATAAGVSKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHS
        MNN+IKKFKS SNQQEPD SQPQPSTFANLDDNLLFEVFKHVDARTLAT AGVSKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHS
Subjt:  MNNKIKKFKSDSNQQEPDQSQPQPSTFANLDDNLLFEVFKHVDARTLATAAGVSKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHS

Query:  LYPFPPMIGCN-PWGKDEVHLSLSLLSIRYYEKMKFKNRPTS
        LYPFPPMIGCN PWGKDEVHLSLSLLSIRYYEKMKFKNRPTS
Subjt:  LYPFPPMIGCN-PWGKDEVHLSLSLLSIRYYEKMKFKNRPTS

XP_008445558.1 PREDICTED: F-box protein GID2-like [Cucumis melo]

1.2e-73

97.2

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Query:  MNNKIKKFKSDSNQQE-PDQSQPQPSTFANLDDNLLFEVFKHVDARTLATAAGVSKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLH
        MNNKIKKFKSDSNQQE PD+SQPQPSTFANLDDNLLFEVFKHVDARTLATAAGV+KQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLH
Subjt:  MNNKIKKFKSDSNQQE-PDQSQPQPSTFANLDDNLLFEVFKHVDARTLATAAGVSKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLH

Query:  SLYPFPPMIGCN-PWGKDEVHLSLSLLSIRYYEKMKFKNRPTS
        SLYPFPPMIGCN PWGKDEVHLSLSLLSIRYYEKMKFKNRPTS
Subjt:  SLYPFPPMIGCN-PWGKDEVHLSLSLLSIRYYEKMKFKNRPTS

XP_022962352.1 F-box protein GID2-like [Cucurbita moschata]

5.3e-58

82.14

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Query:  IKKFKSDSNQQEPDQSQPQPSTFANLDDNLLFEVFKHVDARTLATAAGVSKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHSLYPF
        +KK KS S +Q+     P  S FANLDDNLLFEVFKHVDARTLATAAGVSKQW KTAHDE LWELLCTKHW N+GCANQQLRSVVLALGGFRRLHSLYPF
Subjt:  IKKFKSDSNQQEPDQSQPQPSTFANLDDNLLFEVFKHVDARTLATAAGVSKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHSLYPF

Query:  PPMIG---CNPWGKDEVHLSLSLLSIRYYEKMKFKNRPTS
        PP++G   C PWGKDE+HLSLSLLSIRYYEKMKFKNRPTS
Subjt:  PPMIG---CNPWGKDEVHLSLSLLSIRYYEKMKFKNRPTS

XP_023522812.1 F-box protein GID2-like [Cucurbita pepo subsp. pepo]

1.4e-58

83.8

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Query:  IKKFKSDSNQQEPDQSQP--QPSTFANLDDNLLFEVFKHVDARTLATAAGVSKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHSLY
        +KK KS S +Q   QS P    S FANLDDNLLFEVFKHVDARTLATAAGVSKQW+KTAHDE LWELLCTKHW N+GCANQQLRSVVLALGGFRRLHSLY
Subjt:  IKKFKSDSNQQEPDQSQP--QPSTFANLDDNLLFEVFKHVDARTLATAAGVSKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHSLY

Query:  PFPPMIG---CNPWGKDEVHLSLSLLSIRYYEKMKFKNRPTS
        PFPP+IG   C PWGKDEVHLSLSLLSIRYYEKMKFKNRPTS
Subjt:  PFPPMIG---CNPWGKDEVHLSLSLLSIRYYEKMKFKNRPTS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LR75 F-box domain-containing protein

1.3e-73

96.48

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Query:  MNNKIKKFKSDSNQQEPDQSQPQPSTFANLDDNLLFEVFKHVDARTLATAAGVSKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHS
        MNN+IKKFKS SNQQEPD SQPQPSTFANLDDNLLFEVFKHVDARTLAT AGVSKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHS
Subjt:  MNNKIKKFKSDSNQQEPDQSQPQPSTFANLDDNLLFEVFKHVDARTLATAAGVSKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHS

Query:  LYPFPPMIGCN-PWGKDEVHLSLSLLSIRYYEKMKFKNRPTS
        LYPFPPMIGCN PWGKDEVHLSLSLLSIRYYEKMKFKNRPTS
Subjt:  LYPFPPMIGCN-PWGKDEVHLSLSLLSIRYYEKMKFKNRPTS

A0A1S3BDV6 F-box protein GID2-like

5.7e-74

97.2

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Query:  MNNKIKKFKSDSNQQE-PDQSQPQPSTFANLDDNLLFEVFKHVDARTLATAAGVSKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLH
        MNNKIKKFKSDSNQQE PD+SQPQPSTFANLDDNLLFEVFKHVDARTLATAAGV+KQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLH
Subjt:  MNNKIKKFKSDSNQQE-PDQSQPQPSTFANLDDNLLFEVFKHVDARTLATAAGVSKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLH

Query:  SLYPFPPMIGCN-PWGKDEVHLSLSLLSIRYYEKMKFKNRPTS
        SLYPFPPMIGCN PWGKDEVHLSLSLLSIRYYEKMKFKNRPTS
Subjt:  SLYPFPPMIGCN-PWGKDEVHLSLSLLSIRYYEKMKFKNRPTS

A0A5A7V5E1 F-box protein GID2-like

5.7e-74

97.2

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Query:  MNNKIKKFKSDSNQQE-PDQSQPQPSTFANLDDNLLFEVFKHVDARTLATAAGVSKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLH
        MNNKIKKFKSDSNQQE PD+SQPQPSTFANLDDNLLFEVFKHVDARTLATAAGV+KQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLH
Subjt:  MNNKIKKFKSDSNQQE-PDQSQPQPSTFANLDDNLLFEVFKHVDARTLATAAGVSKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLH

Query:  SLYPFPPMIGCN-PWGKDEVHLSLSLLSIRYYEKMKFKNRPTS
        SLYPFPPMIGCN PWGKDEVHLSLSLLSIRYYEKMKFKNRPTS
Subjt:  SLYPFPPMIGCN-PWGKDEVHLSLSLLSIRYYEKMKFKNRPTS

A0A6J1HCI1 F-box protein GID2-like

2.6e-58

82.14

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Query:  IKKFKSDSNQQEPDQSQPQPSTFANLDDNLLFEVFKHVDARTLATAAGVSKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHSLYPF
        +KK KS S +Q+     P  S FANLDDNLLFEVFKHVDARTLATAAGVSKQW KTAHDE LWELLCTKHW N+GCANQQLRSVVLALGGFRRLHSLYPF
Subjt:  IKKFKSDSNQQEPDQSQPQPSTFANLDDNLLFEVFKHVDARTLATAAGVSKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHSLYPF

Query:  PPMIG---CNPWGKDEVHLSLSLLSIRYYEKMKFKNRPTS
        PP++G   C PWGKDE+HLSLSLLSIRYYEKMKFKNRPTS
Subjt:  PPMIG---CNPWGKDEVHLSLSLLSIRYYEKMKFKNRPTS

A0A6J1K7I7 F-box protein GID2-like

6.4e-57

81.43

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Query:  IKKFKSDSNQQEPDQSQPQPSTFANLDDNLLFEVFKHVDARTLATAAGVSKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHSLYPF
        +KK KS S  QE     P  S FANLDDNLLFEVFKHVDARTLATA+GVSKQW+KTAHDE LWELLCTKHW N+GCAN QLRSVVLALGGFRRLHSLYPF
Subjt:  IKKFKSDSNQQEPDQSQPQPSTFANLDDNLLFEVFKHVDARTLATAAGVSKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHSLYPF

Query:  PPMIG---CNPWGKDEVHLSLSLLSIRYYEKMKFKNRPTS
        PP+IG   C  WGK EVHLSLSLLSIRYYEKMKFKNRPTS
Subjt:  PPMIG---CNPWGKDEVHLSLSLLSIRYYEKMKFKNRPTS

SwissProt top hits

e value

%identity

Alignment

Q7XAK4 F-box protein GID2

3.8e-22

42.67

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Query:  SDSNQQEPDQSQ-PQPSTFA---------NLDDNLLFEVFKHVDARTLATAAGVSKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLH
        S S+Q  P Q Q  QP   A         +L ++L+FEV +  +ARTLA AA VS+ W + A DERLWE  C + W NLG + +QLR+VVL+LGGFRRLH
Subjt:  SDSNQQEPDQSQ-PQPSTFA---------NLDDNLLFEVFKHVDARTLATAAGVSKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLH

Query:  SLYPFP----------------PMIGCNPWGKDEVHLSLSLLSIRYYEKM
        ++Y  P                P +     G+D+V LSLSL SI +++ M
Subjt:  SLYPFP----------------PMIGCNPWGKDEVHLSLSLLSIRYYEKM

Q9LUB6 F-box protein SNE

4.3e-10

33.59

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Query:  KSDSNQQEPDQSQPQPSTFANLDDNLLFEVFKHVDARTLATAAGVSKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHSLYPFPPMI
        KS++ +Q  +Q    P    N   ++L E+ + +D  +L +AA V + W   A ++ +WE LC +  +     +  LRSVV ALGG+R L+ L    P++
Subjt:  KSDSNQQEPDQSQPQPSTFANLDDNLLFEVFKHVDARTLATAAGVSKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHSLYPFPPMI

Query:  GCNP---WGKDEVHLSLSLLSIRYYEKM
           P   W +D++ LSLSL  + YYE++
Subjt:  GCNP---WGKDEVHLSLSLLSIRYYEKM

Q9STX3 F-box protein GID2

3.1e-40

68.97

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Query:  FANLDDNLLFEVFKHVDARTLATAAGVSKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHSLYPFPPMIGCNP---WGKDEVHLSLS
        F+NLD+NL++EV KHVDA+TLA ++ VSK W KTA DERLWEL+CT+HWTN+GC   QLRSVVLALGGFRRLHSLY + P+   NP   +GKDE+ L+LS
Subjt:  FANLDDNLLFEVFKHVDARTLATAAGVSKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHSLYPFPPMIGCNP---WGKDEVHLSLS

Query:  LLSIRYYEKMKFKNRP
        LLSIRYYEKM F  RP
Subjt:  LLSIRYYEKMKFKNRP

Arabidopsis top hits

e value

%identity

Alignment

AT4G24210.1 F-box family protein

2.2e-41

68.97

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Query:  FANLDDNLLFEVFKHVDARTLATAAGVSKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHSLYPFPPMIGCNP---WGKDEVHLSLS
        F+NLD+NL++EV KHVDA+TLA ++ VSK W KTA DERLWEL+CT+HWTN+GC   QLRSVVLALGGFRRLHSLY + P+   NP   +GKDE+ L+LS
Subjt:  FANLDDNLLFEVFKHVDARTLATAAGVSKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHSLYPFPPMIGCNP---WGKDEVHLSLS

Query:  LLSIRYYEKMKFKNRP
        LLSIRYYEKM F  RP
Subjt:  LLSIRYYEKMKFKNRP

AT5G48170.1 F-box family protein

3.1e-11

33.59

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Query:  KSDSNQQEPDQSQPQPSTFANLDDNLLFEVFKHVDARTLATAAGVSKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHSLYPFPPMI
        KS++ +Q  +Q    P    N   ++L E+ + +D  +L +AA V + W   A ++ +WE LC +  +     +  LRSVV ALGG+R L+ L    P++
Subjt:  KSDSNQQEPDQSQPQPSTFANLDDNLLFEVFKHVDARTLATAAGVSKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHSLYPFPPMI

Query:  GCNP---WGKDEVHLSLSLLSIRYYEKM
           P   W +D++ LSLSL  + YYE++
Subjt:  GCNP---WGKDEVHLSLSLLSIRYYEKM

Sequences

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CDS sequence

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ATGAACAACAAAATCAAGAAATTTAAATCAGATTCAAACCAACAAGAACCAGATCAATCTCAACCACAACCCTCTACCTTTGCAAATTTAGACGACAATTTGTTGTTCGA
GGTGTTTAAGCACGTCGATGCAAGGACACTGGCTACCGCCGCCGGCGTCAGCAAGCAGTGGTTCAAAACCGCTCACGACGAGCGCCTCTGGGAGCTGCTCTGCACCAAAC
ACTGGACCAACCTTGGCTGTGCTAACCAACAGCTACGCTCCGTCGTTCTTGCGCTTGGTGGCTTCCGTCGATTACATTCTCTTTACCCATTTCCCCCTATGATTGGATGT
AATCCATGGGGCAAAGATGAGGTTCATCTCTCCCTTTCCCTTCTCTCAATTCGCTACTACGAGAAGATGAAGTTTAAAAACAGACCCACATCTTGA

mRNA sequence

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Protein sequence

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MNNKIKKFKSDSNQQEPDQSQPQPSTFANLDDNLLFEVFKHVDARTLATAAGVSKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHSLYPFPPMIGC
NPWGKDEVHLSLSLLSIRYYEKMKFKNRPTS

PI0005253 (gene) of Melon (PI 482460) v1 genome