; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0005273 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0005273
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr05:10999396..11000823
RNA-Seq ExpressionPI0005273
SyntenyPI0005273
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN33993.1 retrotransposon gag protein [Cucumis melo subsp. melo]4.6e-6268.48Show/hide
Query:  MLNMTTLLTSFVQSGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNTGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALTTNTI
        MLNMTTLLTSFVQ   +KV KCGVC LVGHPNDKCP+++E+ N++RKYDP+ NTYN+GWRDNPNLRWGNDNQ+ +QA  +S+NQGTNLED++KAL TNT+
Subjt:  MLNMTTLLTSFVQSGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNTGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALTTNTI

Query:  YFQNEMKQQMSHLTNSISKLEGKGKLLAQPDHANVSAISLRSCKLLETPSS-EEKVTSTPTLLENKDEKKEEKLETSTLSSSSK
         FQ EMKQQM+ LT +ISK++GKGKL AQPD+ANVSAISLRS K+L+TP++ E+KVTS    L +K+E KEEK+ET+   S+SK
Subjt:  YFQNEMKQQMSHLTNSISKLEGKGKLLAQPDHANVSAISLRSCKLLETPSS-EEKVTSTPTLLENKDEKKEEKLETSTLSSSSK

KAA0047407.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.0e-6267.93Show/hide
Query:  MLNMTTLLTSFVQSGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNTGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALTTNTI
        MLNMTTLLTSFVQ   +KV KCGVCGLVGHPNDKCP+++E+ N++RKYDPH NTYN+GWRDNPNLRWGNDNQ+ +QA S+S+NQGTNLED++KAL TNT+
Subjt:  MLNMTTLLTSFVQSGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNTGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALTTNTI

Query:  YFQNEMKQQMSHLTNSISKLEGKGKLLAQPDHANVSAISLRSCKLLETPSS-EEKVTSTPTLLENKDEKKEEKLETSTLSSSSK
         FQ EMKQQM+ LT +ISK++GKGKL AQ ++ANVSA+SLRS K+L+TP++ E+K TS P  L  K+E KEEK+ET+    +SK
Subjt:  YFQNEMKQQMSHLTNSISKLEGKGKLLAQPDHANVSAISLRSCKLLETPSS-EEKVTSTPTLLENKDEKKEEKLETSTLSSSSK

KAA0051761.1 retrotransposon gag protein [Cucumis melo var. makuwa]3.5e-6269.06Show/hide
Query:  MTTLLTSFVQSGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNTGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALTTNTIYFQ
        MT LLTSFVQ   +KV KCGVCGLVGHPNDKCP+++E+ N+++KYDPH NTYN+GWRDNPNLRWGNDNQ+ +QA  +S+NQGTNLED++KAL TNT+ FQ
Subjt:  MTTLLTSFVQSGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNTGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALTTNTIYFQ

Query:  NEMKQQMSHLTNSISKLEGKGKLLAQPDHANVSAISLRSCKLLETPSS-EEKVTSTPTLLENKDEKKEEKLETSTLSSSSK
         EMKQQM+ LT  ISK++GKGKLLAQPDHANVS ISLRS K+L+TP++ E+KVTS P  L +K+E KEEK ET+   S+SK
Subjt:  NEMKQQMSHLTNSISKLEGKGKLLAQPDHANVSAISLRSCKLLETPSS-EEKVTSTPTLLENKDEKKEEKLETSTLSSSSK

XP_008465649.1 PREDICTED: uncharacterized protein LOC103503291, partial [Cucumis melo]3.5e-6267.93Show/hide
Query:  MLNMTTLLTSFVQSGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNTGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALTTNTI
        MLNMTTLLTSFVQ  ++KV KCGVCGLVG+PNDKCP ++E+ N++R+YDPH NTYN GWRDNPNLRWGNDNQ+ +QA  +S+NQGTNLED++KAL TNT+
Subjt:  MLNMTTLLTSFVQSGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNTGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALTTNTI

Query:  YFQNEMKQQMSHLTNSISKLEGKGKLLAQPDHANVSAISLRSCKLLETPSS-EEKVTSTPTLLENKDEKKEEKLETSTLSSSSK
         FQ +MKQQM+ LT  ISK++GKGKL AQPDH NVSAISLRS K+L+TP++ E+KVTS    L +K++ KEEK+ET++ SS+SK
Subjt:  YFQNEMKQQMSHLTNSISKLEGKGKLLAQPDHANVSAISLRSCKLLETPSS-EEKVTSTPTLLENKDEKKEEKLETSTLSSSSK

XP_016902871.1 PREDICTED: uncharacterized protein LOC107991910 [Cucumis melo]3.5e-6269.06Show/hide
Query:  MTTLLTSFVQSGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNTGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALTTNTIYFQ
        MT LLTSFVQ   +KV KCGVCGLVGHPNDKCP+++E+ N+++KYDPH NTYN+GWRDNPNLRWGNDNQ+ +QA  +S+NQGTNLED++KAL TNT+ FQ
Subjt:  MTTLLTSFVQSGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNTGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALTTNTIYFQ

Query:  NEMKQQMSHLTNSISKLEGKGKLLAQPDHANVSAISLRSCKLLETPSS-EEKVTSTPTLLENKDEKKEEKLETSTLSSSSK
         EMKQQM+ LT  ISK++GKGKLLAQPDHANVS ISLRS K+L+TP++ E+KVTS P  L +K+E KEEK ET+   S+SK
Subjt:  NEMKQQMSHLTNSISKLEGKGKLLAQPDHANVSAISLRSCKLLETPSS-EEKVTSTPTLLENKDEKKEEKLETSTLSSSSK

TrEMBL top hitse value%identityAlignment
A0A1S3CQU8 uncharacterized protein LOC1035032911.7e-6267.93Show/hide
Query:  MLNMTTLLTSFVQSGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNTGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALTTNTI
        MLNMTTLLTSFVQ  ++KV KCGVCGLVG+PNDKCP ++E+ N++R+YDPH NTYN GWRDNPNLRWGNDNQ+ +QA  +S+NQGTNLED++KAL TNT+
Subjt:  MLNMTTLLTSFVQSGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNTGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALTTNTI

Query:  YFQNEMKQQMSHLTNSISKLEGKGKLLAQPDHANVSAISLRSCKLLETPSS-EEKVTSTPTLLENKDEKKEEKLETSTLSSSSK
         FQ +MKQQM+ LT  ISK++GKGKL AQPDH NVSAISLRS K+L+TP++ E+KVTS    L +K++ KEEK+ET++ SS+SK
Subjt:  YFQNEMKQQMSHLTNSISKLEGKGKLLAQPDHANVSAISLRSCKLLETPSS-EEKVTSTPTLLENKDEKKEEKLETSTLSSSSK

A0A1S4E3R2 uncharacterized protein LOC1079919101.7e-6269.06Show/hide
Query:  MTTLLTSFVQSGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNTGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALTTNTIYFQ
        MT LLTSFVQ   +KV KCGVCGLVGHPNDKCP+++E+ N+++KYDPH NTYN+GWRDNPNLRWGNDNQ+ +QA  +S+NQGTNLED++KAL TNT+ FQ
Subjt:  MTTLLTSFVQSGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNTGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALTTNTIYFQ

Query:  NEMKQQMSHLTNSISKLEGKGKLLAQPDHANVSAISLRSCKLLETPSS-EEKVTSTPTLLENKDEKKEEKLETSTLSSSSK
         EMKQQM+ LT  ISK++GKGKLLAQPDHANVS ISLRS K+L+TP++ E+KVTS P  L +K+E KEEK ET+   S+SK
Subjt:  NEMKQQMSHLTNSISKLEGKGKLLAQPDHANVSAISLRSCKLLETPSS-EEKVTSTPTLLENKDEKKEEKLETSTLSSSSK

A0A5A7VQ60 Retrotransposon gag protein2.2e-6269.19Show/hide
Query:  MLNM-TTLLTSFVQSGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNTGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALTTNT
        MLNM TTLLTSFVQ   +KV KCGVCGLVGH N+KCP+++E+ N++R+YDPHSNTYN+GWRDNPNLRWGNDNQ+ +QA S+S+NQGTNLED++KAL TNT
Subjt:  MLNM-TTLLTSFVQSGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNTGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALTTNT

Query:  IYFQNEMKQQMSHLTNSISKLEGKGKLLAQPDHANVSAISLRSCKLLETPSS-EEKVTSTPTLLENKDEKKEEKLETSTLSSSSK
        + FQ EMKQQM+ LT +ISK++GKGKL AQ DHANVSAISLRS K+L+TP++ E+KVTS P  L +K+E KEEK+ET+   S+SK
Subjt:  IYFQNEMKQQMSHLTNSISKLEGKGKLLAQPDHANVSAISLRSCKLLETPSS-EEKVTSTPTLLENKDEKKEEKLETSTLSSSSK

A0A5D3CRR8 Retrotransposon gag protein9.9e-6367.93Show/hide
Query:  MLNMTTLLTSFVQSGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNTGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALTTNTI
        MLNMTTLLTSFVQ   +KV KCGVCGLVGHPNDKCP+++E+ N++RKYDPH NTYN+GWRDNPNLRWGNDNQ+ +QA S+S+NQGTNLED++KAL TNT+
Subjt:  MLNMTTLLTSFVQSGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNTGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALTTNTI

Query:  YFQNEMKQQMSHLTNSISKLEGKGKLLAQPDHANVSAISLRSCKLLETPSS-EEKVTSTPTLLENKDEKKEEKLETSTLSSSSK
         FQ EMKQQM+ LT +ISK++GKGKL AQ ++ANVSA+SLRS K+L+TP++ E+K TS P  L  K+E KEEK+ET+    +SK
Subjt:  YFQNEMKQQMSHLTNSISKLEGKGKLLAQPDHANVSAISLRSCKLLETPSS-EEKVTSTPTLLENKDEKKEEKLETSTLSSSSK

A0A5D3DCG3 Retrotransposon gag protein1.7e-6269.06Show/hide
Query:  MTTLLTSFVQSGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNTGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALTTNTIYFQ
        MT LLTSFVQ   +KV KCGVCGLVGHPNDKCP+++E+ N+++KYDPH NTYN+GWRDNPNLRWGNDNQ+ +QA  +S+NQGTNLED++KAL TNT+ FQ
Subjt:  MTTLLTSFVQSGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNTGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALTTNTIYFQ

Query:  NEMKQQMSHLTNSISKLEGKGKLLAQPDHANVSAISLRSCKLLETPSS-EEKVTSTPTLLENKDEKKEEKLETSTLSSSSK
         EMKQQM+ LT  ISK++GKGKLLAQPDHANVS ISLRS K+L+TP++ E+KVTS P  L +K+E KEEK ET+   S+SK
Subjt:  NEMKQQMSHLTNSISKLEGKGKLLAQPDHANVSAISLRSCKLLETPSS-EEKVTSTPTLLENKDEKKEEKLETSTLSSSSK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTAATATGACTACTTTACTAACTTCCTTTGTGCAAAGTGGATCTGTTAAAGTTGCTAAGTGCGGGGTTTGCGGTCTAGTCGGACATCCTAATGACAAGTGCCCAGA
CTTAGTTGAAGAGGCAAATGTCATTAGGAAGTACGATCCTCATAGCAATACTTACAATACCGGTTGGAGAGACAACCCTAATCTAAGATGGGGAAATGACAACCAAAGAC
CTTCACAAGCGACTTCCTCTTCAAACAATCAAGGTACGAATTTGGAAGATTTAGTTAAAGCTCTTACTACTAATACCATCTATTTTCAAAATGAAATGAAGCAACAAATG
TCTCATCTGACTAACTCAATAAGCAAGCTAGAAGGTAAAGGCAAACTTCTGGCTCAGCCAGATCATGCTAATGTAAGTGCCATCTCGCTTAGAAGCTGTAAACTTCTGGA
AACCCCTTCAAGTGAAGAAAAGGTAACTTCTACTCCAACCCTTCTAGAAAATAAAGATGAGAAAAAGGAAGAAAAATTAGAAACTAGTACTTTATCATCTAGTTCTAAAG
AATTGCATGATGAATTAGAAGAATTGCCTATTGATATTGAATTTTCTAAACAAGAATTAGATGAAATTGATGATGATAAAAAGATGGTAGAAGTAGAAATGGATGAAAAT
TTTAATAATCTTGAGAATGATTCTGACAATCTTTTCTTTTCTCCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGCTTAATATGACTACTTTACTAACTTCCTTTGTGCAAAGTGGATCTGTTAAAGTTGCTAAGTGCGGGGTTTGCGGTCTAGTCGGACATCCTAATGACAAGTGCCCAGA
CTTAGTTGAAGAGGCAAATGTCATTAGGAAGTACGATCCTCATAGCAATACTTACAATACCGGTTGGAGAGACAACCCTAATCTAAGATGGGGAAATGACAACCAAAGAC
CTTCACAAGCGACTTCCTCTTCAAACAATCAAGGTACGAATTTGGAAGATTTAGTTAAAGCTCTTACTACTAATACCATCTATTTTCAAAATGAAATGAAGCAACAAATG
TCTCATCTGACTAACTCAATAAGCAAGCTAGAAGGTAAAGGCAAACTTCTGGCTCAGCCAGATCATGCTAATGTAAGTGCCATCTCGCTTAGAAGCTGTAAACTTCTGGA
AACCCCTTCAAGTGAAGAAAAGGTAACTTCTACTCCAACCCTTCTAGAAAATAAAGATGAGAAAAAGGAAGAAAAATTAGAAACTAGTACTTTATCATCTAGTTCTAAAG
AATTGCATGATGAATTAGAAGAATTGCCTATTGATATTGAATTTTCTAAACAAGAATTAGATGAAATTGATGATGATAAAAAGATGGTAGAAGTAGAAATGGATGAAAAT
TTTAATAATCTTGAGAATGATTCTGACAATCTTTTCTTTTCTCCCTAG
Protein sequenceShow/hide protein sequence
MLNMTTLLTSFVQSGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNTGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALTTNTIYFQNEMKQQM
SHLTNSISKLEGKGKLLAQPDHANVSAISLRSCKLLETPSSEEKVTSTPTLLENKDEKKEEKLETSTLSSSSKELHDELEELPIDIEFSKQELDEIDDDKKMVEVEMDEN
FNNLENDSDNLFFSP