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PI0005276 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0005276
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr03:24394745..24395128
RNA-Seq ExpressionPI0005276
SyntenyPI0005276
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0063883.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]9.8e-3581.91Show/hide
Query:  MTQEDKETTENAVYGSIVLNLSDNVLKEVIDKETTYGMWKKLDELYQSKDLPNRAYMRERFFTFKMDNNKSLTENLREFKKLSIDFKDLRDKIG
        MT E+KET ENA YG+IVLNLSDNVL+EVI ++TTYGMWKKL+ELYQSKDLPNRAY+RERFFTFKMD NKSLTENL EFKKLS DF++L DKIG
Subjt:  MTQEDKETTENAVYGSIVLNLSDNVLKEVIDKETTYGMWKKLDELYQSKDLPNRAYMRERFFTFKMDNNKSLTENLREFKKLSIDFKDLRDKIG

TYJ96960.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]7.2e-3882.65Show/hide
Query:  MTQEDKETTENAVYGSIVLNLSDNVLKEVIDKETTYGMWKKLDELYQSKDLPNRAYMRERFFTFKMDNNKSLTENLREFKKLSIDFKDLRDKIGDENE
        MTQE+KET EN  YG+IVLNLSDNVLKEVI +ETTYGMWKKL+ELYQSKDLPNRAYMRERF T+KMD+NKSL ENL EFKKLS+DF++L+DKIGDENE
Subjt:  MTQEDKETTENAVYGSIVLNLSDNVLKEVIDKETTYGMWKKLDELYQSKDLPNRAYMRERFFTFKMDNNKSLTENLREFKKLSIDFKDLRDKIGDENE

TYK28110.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]1.0e-3181.61Show/hide
Query:  ENAVYGSIVLNLSDNVLKEVIDKETTYGMWKKLDELYQSKDLPNRAYMRERFFTFKMDNNKSLTENLREFKKLSIDFKDLRDKIGDE
        ENAVYG+IVLNLSDNVL+EVI +ETTYGMWKKL+ELYQ KDLPNRA++RERFFTFKMD+NK + ENL EFKKLS +FK+LRDKIGDE
Subjt:  ENAVYGSIVLNLSDNVLKEVIDKETTYGMWKKLDELYQSKDLPNRAYMRERFFTFKMDNNKSLTENLREFKKLSIDFKDLRDKIGDE

XP_038880370.1 uncharacterized protein LOC120072018 [Benincasa hispida]7.2e-3054.39Show/hide
Query:  MTQEDKETTENAVYGSIVLNLSDNVLKEVIDKETTYGMWKKLDELYQSKDLPNRAYMRERFFTFKMDNNKSLTENLREFKKLSIDFKDLRDKIGDENELF
        +++ DKET E   YG+I+LN++D++L++++D+ T Y +W KL+E+Y +KDLPN+A+ RERFFT+K+D  KSLT+NL EFK+LS +F+ +RD I +ENE F
Subjt:  MTQEDKETTENAVYGSIVLNLSDNVLKEVIDKETTYGMWKKLDELYQSKDLPNRAYMRERFFTFKMDNNKSLTENLREFKKLSIDFKDLRDKIGDENELF

Query:  ILLKSLPDAYKKVK
        ILL SLP+++K VK
Subjt:  ILLKSLPDAYKKVK

XP_038885928.1 uncharacterized protein LOC120076236 [Benincasa hispida]7.2e-3053.78Show/hide
Query:  DKETTENAVYGSIVLNLSDNVLKEVIDKETTYGMWKKLDELYQSKDLPNRAYMRERFFTFKMDNNKSLTENLREFKKLSIDFKDLRDKIGDENELFILLK
        +KET E+  YG+IVLN+ D+VL++++D+ T Y +W KL+++Y +KDLPN+A++RERFFT+KMD  KSLT+NL EFK LS DF+ + D IG+ENE FILL 
Subjt:  DKETTENAVYGSIVLNLSDNVLKEVIDKETTYGMWKKLDELYQSKDLPNRAYMRERFFTFKMDNNKSLTENLREFKKLSIDFKDLRDKIGDENELFILLK

Query:  SLPDAYKKVKNGSQIWKKK
        SLP+ +K VK   +  +++
Subjt:  SLPDAYKKVKNGSQIWKKK

TrEMBL top hitse value%identityAlignment
A0A5A7V1L8 Retrovirus-related Pol polyprotein from transposon TNT 1-944.6e-3080.46Show/hide
Query:  MTQEDKETTENAVYGSIVLNLSDNVLKEVIDKETTYGMWKKLDELYQSKDLPNRAYMRERFFTFKMDNNKSLTENLREFKKLSIDFK
        MTQEDKET E A YG+IVLNLSDNV++EVID+E  YGMWKKLDELYQSKDL N AY+RERFFTFKMD+N SL ENL EFKKLS DFK
Subjt:  MTQEDKETTENAVYGSIVLNLSDNVLKEVIDKETTYGMWKKLDELYQSKDLPNRAYMRERFFTFKMDNNKSLTENLREFKKLSIDFK

A0A5A7V269 Putative gag protein5.1e-2959.29Show/hide
Query:  MTQEDKETTENAVYGSIVLNLSDNVLKEVIDKETTYGMWKKLDELYQSKDLPNRAYMRERFFTFKMDNNKSLTENLREFKKLSIDFKDLRDKIGDENELF
        +T+E  E  E+A YG+IVL LSDNVL E+IDKETTY +W KL+E+Y ++DL NRAY+ E+FFT+ MD+N+SLT+ L EFKKLS +F+ L D+I +ENE F
Subjt:  MTQEDKETTENAVYGSIVLNLSDNVLKEVIDKETTYGMWKKLDELYQSKDLPNRAYMRERFFTFKMDNNKSLTENLREFKKLSIDFKDLRDKIGDENELF

Query:  ILLKSLPDAYKKV
         LL SL D Y++V
Subjt:  ILLKSLPDAYKKV

A0A5A7V6Z9 Retrovirus-related Pol polyprotein from transposon TNT 1-944.7e-3581.91Show/hide
Query:  MTQEDKETTENAVYGSIVLNLSDNVLKEVIDKETTYGMWKKLDELYQSKDLPNRAYMRERFFTFKMDNNKSLTENLREFKKLSIDFKDLRDKIG
        MT E+KET ENA YG+IVLNLSDNVL+EVI ++TTYGMWKKL+ELYQSKDLPNRAY+RERFFTFKMD NKSLTENL EFKKLS DF++L DKIG
Subjt:  MTQEDKETTENAVYGSIVLNLSDNVLKEVIDKETTYGMWKKLDELYQSKDLPNRAYMRERFFTFKMDNNKSLTENLREFKKLSIDFKDLRDKIG

A0A5D3BAU2 Retrovirus-related Pol polyprotein from transposon TNT 1-943.5e-3882.65Show/hide
Query:  MTQEDKETTENAVYGSIVLNLSDNVLKEVIDKETTYGMWKKLDELYQSKDLPNRAYMRERFFTFKMDNNKSLTENLREFKKLSIDFKDLRDKIGDENE
        MTQE+KET EN  YG+IVLNLSDNVLKEVI +ETTYGMWKKL+ELYQSKDLPNRAYMRERF T+KMD+NKSL ENL EFKKLS+DF++L+DKIGDENE
Subjt:  MTQEDKETTENAVYGSIVLNLSDNVLKEVIDKETTYGMWKKLDELYQSKDLPNRAYMRERFFTFKMDNNKSLTENLREFKKLSIDFKDLRDKIGDENE

A0A5D3DXZ1 Retrovirus-related Pol polyprotein from transposon TNT 1-944.9e-3281.61Show/hide
Query:  ENAVYGSIVLNLSDNVLKEVIDKETTYGMWKKLDELYQSKDLPNRAYMRERFFTFKMDNNKSLTENLREFKKLSIDFKDLRDKIGDE
        ENAVYG+IVLNLSDNVL+EVI +ETTYGMWKKL+ELYQ KDLPNRA++RERFFTFKMD+NK + ENL EFKKLS +FK+LRDKIGDE
Subjt:  ENAVYGSIVLNLSDNVLKEVIDKETTYGMWKKLDELYQSKDLPNRAYMRERFFTFKMDNNKSLTENLREFKKLSIDFKDLRDKIGDE

SwissProt top hitse value%identityAlignment
P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-949.2e-1232.73Show/hide
Query:  MTQEDKETTENAVYGSIVLNLSDNVLKEVIDKETTYGMWKKLDELYQSKDLPNRAYMRERFFTFKMDNNKSLTENLREFKKLSIDFKDLRDKIGDENELF
        M  ED    +     +I L+LSD+V+  +ID++T  G+W +L+ LY SK L N+ Y++++ +   M    +   +L  F  L     +L  KI +E++  
Subjt:  MTQEDKETTENAVYGSIVLNLSDNVLKEVIDKETTYGMWKKLDELYQSKDLPNRAYMRERFFTFKMDNNKSLTENLREFKKLSIDFKDLRDKIGDENELF

Query:  ILLKSLPDAY
        +LL SLP +Y
Subjt:  ILLKSLPDAY

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTCAAGAAGACAAAGAAACTACGGAAAATGCAGTTTATGGTTCTATAGTTCTAAACCTAAGTGACAATGTCCTTAAGGAGGTCATTGATAAAGAAACAACTTATGG
AATGTGGAAGAAGTTGGATGAACTTTATCAATCGAAAGACTTACCAAACCGTGCATACATGAGGGAAAGATTCTTTACCTTCAAGATGGACAACAACAAGTCATTGACAG
AGAATCTTAGAGAATTCAAGAAGTTGTCAATTGATTTCAAGGACTTGAGAGACAAGATTGGTGATGAAAATGAATTATTCATTTTGCTAAAGTCACTTCCAGATGCATAT
AAAAAAGTCAAAAATGGCTCTCAAATATGGAAGAAAAAAAATCACCACCAATGA
mRNA sequenceShow/hide mRNA sequence
ATGACTCAAGAAGACAAAGAAACTACGGAAAATGCAGTTTATGGTTCTATAGTTCTAAACCTAAGTGACAATGTCCTTAAGGAGGTCATTGATAAAGAAACAACTTATGG
AATGTGGAAGAAGTTGGATGAACTTTATCAATCGAAAGACTTACCAAACCGTGCATACATGAGGGAAAGATTCTTTACCTTCAAGATGGACAACAACAAGTCATTGACAG
AGAATCTTAGAGAATTCAAGAAGTTGTCAATTGATTTCAAGGACTTGAGAGACAAGATTGGTGATGAAAATGAATTATTCATTTTGCTAAAGTCACTTCCAGATGCATAT
AAAAAAGTCAAAAATGGCTCTCAAATATGGAAGAAAAAAAATCACCACCAATGA
Protein sequenceShow/hide protein sequence
MTQEDKETTENAVYGSIVLNLSDNVLKEVIDKETTYGMWKKLDELYQSKDLPNRAYMRERFFTFKMDNNKSLTENLREFKKLSIDFKDLRDKIGDENELFILLKSLPDAY
KKVKNGSQIWKKKNHHQ