CuGenDBv2

Gene ID	PI0005289
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Retrotransposon protein
Genome location	chr03:23696227..23696976
RNA-Seq Expression	PI0005289
Synteny	PI0005289
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0036771.1 retrotransposon protein [Cucumis melo var. makuwa]

2.3e-43

49.22

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Query:  MRGPSCSGFGWNDELKCIIVEKELFDNWVKSHHVAKYLLNRSFPHYDDLCYVFGKDCATRGHAETFVDVGSNVPRGYDGFLADDGNDMEIPTMYNQGLDM
        MRGP+CSGFGWNDE KCI+ EKE+FDNWVKSH  AK LLN+ FP+YD+L YVF KD AT G AE+F DVGSN P GY+ F A+   DM+   MY+QGL+M
Subjt:  MRGPSCSGFGWNDELKCIIVEKELFDNWVKSHHVAKYLLNRSFPHYDDLCYVFGKDCATRGHAETFVDVGSNVPRGYDGFLADDGNDMEIPTMYNQGLDM

Query:  SPD-------------------------------------------DGIPKLSRLDRVPCMRILMRNVEDMKAFLDAPDELKLDYCTVILQDN
        SPD                                           + I +L+ +DR   MRILMRNV+DMKAFL+ PD +K  Y  +ILQ+N
Subjt:  SPD-------------------------------------------DGIPKLSRLDRVPCMRILMRNVEDMKAFLDAPDELKLDYCTVILQDN

KAA0047509.1 retrotransposon protein [Cucumis melo var. makuwa]

1.4e-43

48.24

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Query:  MRGPSCSGFGWNDELKCIIVEKELFDNWVKSHHVAKYLLNRSFPHYDDLCYVFGKDCATRGHAETFVDVGSNVPRGYDGFLADDGNDMEIPTMYNQGLDM
        MRGP+CSGFGWNDE KCII EKE+FD+W  SH  AK LLN+SF HYD+L YVFGKD AT G AE+F D+GSN P GYD F AD   D + P MY+ GL+M
Subjt:  MRGPSCSGFGWNDELKCIIVEKELFDNWVKSHHVAKYLLNRSFPHYDDLCYVFGKDCATRGHAETFVDVGSNVPRGYDGFLADDGNDMEIPTMYNQGLDM

Query:  SPDD-------------------------------------------------GIPKLSRLDRVPCMRILMRNVEDMKAFLDAPDELKLDYCTVILQDN
        SPDD                                                  IP+L+ +DR   MRI+MRNV+DMKAFL+ PD +   YC++ILQ+N
Subjt:  SPDD-------------------------------------------------GIPKLSRLDRVPCMRILMRNVEDMKAFLDAPDELKLDYCTVILQDN

KAA0054019.1 retrotransposon protein [Cucumis melo var. makuwa]

2.1e-44

51.69

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Query:  MRGPSCSGFGWNDELKCIIVEKELFDNWVKSHHVAKYLLNRSFPHYDDLCYVFGKDCATRGHAETFVDVGSNVPRGYDGFLADDGNDMEIPTMYNQGLDM
        MRGPSCS FGWNDE KCII E +L DNWV+ H VAK LLN+SFP+YD+L YVF KD AT    ETF D+GSN P  Y+GF   DGNDMEIPT+Y+QG +M
Subjt:  MRGPSCSGFGWNDELKCIIVEKELFDNWVKSHHVAKYLLNRSFPHYDDLCYVFGKDCATRGHAETFVDVGSNVPRGYDGFLADDGNDMEIPTMYNQGLDM

Query:  SPDD---------------------------GIPKLSRLDRVPCMRILMRNVEDMKAFLDAPDELKLDYCTVILQDNA
        S +D                            IPKLSRLDR  C++IL R+++DMK FL+ P   K+D+ T++L++ +
Subjt:  SPDD---------------------------GIPKLSRLDRVPCMRILMRNVEDMKAFLDAPDELKLDYCTVILQDNA

TYK05687.1 retrotransposon protein [Cucumis melo var. makuwa]

2.8e-44

53.14

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Query:  MRGPSCSGFGWNDELKCIIVEKELFDNWVKSHHVAKYLLNRSFPHYDDLCYVFGKDCATRGHAETFVDVGSNVPRGYDGFLADDGNDMEIPTMYNQGLDM
        MRGP+CSGFGWNDE KCI+VEKE+FD+WVKSH  AK LLN+SFPHYD+L Y+FGKD A  G  ++F DVGSN    Y+ F AD  +D     MY+QGL M
Subjt:  MRGPSCSGFGWNDELKCIIVEKELFDNWVKSHHVAKYLLNRSFPHYDDLCYVFGKDCATRGHAETFVDVGSNVPRGYDGFLADDGNDMEIPTMYNQGLDM

Query:  SPD-------------------------DGIPKLSRLDRVPCMRILMRNVEDMKAFLDAPDELKLDYCTVILQDN
        S D                         + IP+L+ +DR   MRILMRNV+DMKAFL+ PD +K  YC+ ILQ+N
Subjt:  SPD-------------------------DGIPKLSRLDRVPCMRILMRNVEDMKAFLDAPDELKLDYCTVILQDN

TYK19659.1 retrotransposon protein [Cucumis melo var. makuwa]

1.8e-43

53.45

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Query:  MRGPSCSGFGWNDELKCIIVEKELFDNWVKSHHVAKYLLNRSFPHYDDLCYVFGKDCATRGHAETFVDVGSNVPRGYDGFLADDGNDMEIPTMYNQGLDM
        M GP CSGFG NDE KCI+ EKE+FD+WVKSH   K LLN+SF HYD L YVFGKD AT G AE+F DVGSN   GYD F  D   D + P MY+QGL+M
Subjt:  MRGPSCSGFGWNDELKCIIVEKELFDNWVKSHHVAKYLLNRSFPHYDDLCYVFGKDCATRGHAETFVDVGSNVPRGYDGFLADDGNDMEIPTMYNQGLDM

Query:  SPDD------------------------GIPKLSRLDRVPCMRILMRNVEDMKAFLDAPDELKLDYCTVILQDN
          DD                         IP+L+ +DR   MRILMRNV+DMKAFL+ PD +K  YC++I Q+N
Subjt:  SPDD------------------------GIPKLSRLDRVPCMRILMRNVEDMKAFLDAPDELKLDYCTVILQDN

TrEMBL top hits

e value

%identity

Alignment

A0A5A7U216 Retrotransposon protein

6.6e-44

48.24

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Query:  MRGPSCSGFGWNDELKCIIVEKELFDNWVKSHHVAKYLLNRSFPHYDDLCYVFGKDCATRGHAETFVDVGSNVPRGYDGFLADDGNDMEIPTMYNQGLDM
        MRGP+CSGFGWNDE KCII EKE+FD+W  SH  AK LLN+SF HYD+L YVFGKD AT G AE+F D+GSN P GYD F AD   D + P MY+ GL+M
Subjt:  MRGPSCSGFGWNDELKCIIVEKELFDNWVKSHHVAKYLLNRSFPHYDDLCYVFGKDCATRGHAETFVDVGSNVPRGYDGFLADDGNDMEIPTMYNQGLDM

Query:  SPDD-------------------------------------------------GIPKLSRLDRVPCMRILMRNVEDMKAFLDAPDELKLDYCTVILQDN
        SPDD                                                  IP+L+ +DR   MRI+MRNV+DMKAFL+ PD +   YC++ILQ+N
Subjt:  SPDD-------------------------------------------------GIPKLSRLDRVPCMRILMRNVEDMKAFLDAPDELKLDYCTVILQDN

A0A5D3C1J4 Retrotransposon protein

1.3e-44

53.14

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Query:  MRGPSCSGFGWNDELKCIIVEKELFDNWVKSHHVAKYLLNRSFPHYDDLCYVFGKDCATRGHAETFVDVGSNVPRGYDGFLADDGNDMEIPTMYNQGLDM
        MRGP+CSGFGWNDE KCI+VEKE+FD+WVKSH  AK LLN+SFPHYD+L Y+FGKD A  G  ++F DVGSN    Y+ F AD  +D     MY+QGL M
Subjt:  MRGPSCSGFGWNDELKCIIVEKELFDNWVKSHHVAKYLLNRSFPHYDDLCYVFGKDCATRGHAETFVDVGSNVPRGYDGFLADDGNDMEIPTMYNQGLDM

Query:  SPD-------------------------DGIPKLSRLDRVPCMRILMRNVEDMKAFLDAPDELKLDYCTVILQDN
        S D                         + IP+L+ +DR   MRILMRNV+DMKAFL+ PD +K  YC+ ILQ+N
Subjt:  SPD-------------------------DGIPKLSRLDRVPCMRILMRNVEDMKAFLDAPDELKLDYCTVILQDN

A0A5D3CHG6 Retrotransposon protein

1.1e-43

48.19

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Query:  MRGPSCSGFGWNDELKCIIVEKELFDNWVKSHHVAKYLLNRSFPHYDDLCYVFGKDCATRGHAETFVDVGSNVPRGYDGFLADDGNDMEIPTMYNQGLDM
        MRGP+C GFGWNDE KCI+ EKE+FD+WVKSH VAK LLN+ FPHYD+L YVFGKD    G  ETF +VGSN   GY+ F+AD  +D +   MY+QGL+M
Subjt:  MRGPSCSGFGWNDELKCIIVEKELFDNWVKSHHVAKYLLNRSFPHYDDLCYVFGKDCATRGHAETFVDVGSNVPRGYDGFLADDGNDMEIPTMYNQGLDM

Query:  SPD-------------------------------------------DGIPKLSRLDRVPCMRILMRNVEDMKAFLDAPDELKLDYCTVILQDN
        S D                                           + IP+L+ +DR   MRILMRNV++MKAFLD PD +K  YC +ILQ+N
Subjt:  SPD-------------------------------------------DGIPKLSRLDRVPCMRILMRNVEDMKAFLDAPDELKLDYCTVILQDN

A0A5D3D7X4 Retrotransposon protein

8.6e-44

53.45

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Query:  MRGPSCSGFGWNDELKCIIVEKELFDNWVKSHHVAKYLLNRSFPHYDDLCYVFGKDCATRGHAETFVDVGSNVPRGYDGFLADDGNDMEIPTMYNQGLDM
        M GP CSGFG NDE KCI+ EKE+FD+WVKSH   K LLN+SF HYD L YVFGKD AT G AE+F DVGSN   GYD F  D   D + P MY+QGL+M
Subjt:  MRGPSCSGFGWNDELKCIIVEKELFDNWVKSHHVAKYLLNRSFPHYDDLCYVFGKDCATRGHAETFVDVGSNVPRGYDGFLADDGNDMEIPTMYNQGLDM

Query:  SPDD------------------------GIPKLSRLDRVPCMRILMRNVEDMKAFLDAPDELKLDYCTVILQDN
          DD                         IP+L+ +DR   MRILMRNV+DMKAFL+ PD +K  YC++I Q+N
Subjt:  SPDD------------------------GIPKLSRLDRVPCMRILMRNVEDMKAFLDAPDELKLDYCTVILQDN

A0A5D3DB07 Retrotransposon protein

1.0e-44

51.69

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Query:  MRGPSCSGFGWNDELKCIIVEKELFDNWVKSHHVAKYLLNRSFPHYDDLCYVFGKDCATRGHAETFVDVGSNVPRGYDGFLADDGNDMEIPTMYNQGLDM
        MRGPSCS FGWNDE KCII E +L DNWV+ H VAK LLN+SFP+YD+L YVF KD AT    ETF D+GSN P  Y+GF   DGNDMEIPT+Y+QG +M
Subjt:  MRGPSCSGFGWNDELKCIIVEKELFDNWVKSHHVAKYLLNRSFPHYDDLCYVFGKDCATRGHAETFVDVGSNVPRGYDGFLADDGNDMEIPTMYNQGLDM

Query:  SPDD---------------------------GIPKLSRLDRVPCMRILMRNVEDMKAFLDAPDELKLDYCTVILQDNA
        S +D                            IPKLSRLDR  C++IL R+++DMK FL+ P   K+D+ T++L++ +
Subjt:  SPDD---------------------------GIPKLSRLDRVPCMRILMRNVEDMKAFLDAPDELKLDYCTVILQDNA

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT4G02210.1 unknown protein

4.9e-07

25.64

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Query:  GFGWNDELKCIIVEKELFDNWVKSHHVAKYLLNRSFPHYDDLCYVFGKDCATRGHAETFVDVGSNVPR-GYDGFLADDGNDMEIPTMYNQ----------
        GF W++E + +  +  ++ +++K+H  A+  + R  P+Y DLC + G         E FV +    P   +  F +    D+ I                
Subjt:  GFGWNDELKCIIVEKELFDNWVKSHHVAKYLLNRSFPHYDDLCYVFGKDCATRGHAETFVDVGSNVPR-GYDGFLADDGNDMEIPTMYNQ----------

Query:  ------GLDMSPDDGIPKLSRLDRVPCMRILMRNVEDMKAFLDAPDELKLDYCTVI
                D SP +  PK  R+D    M I    VE ++A  D  DEL LD C ++
Subjt:  ------GLDMSPDDGIPKLSRLDRVPCMRILMRNVEDMKAFLDAPDELKLDYCTVI

AT4G02210.2 unknown protein

4.9e-07

25.64

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Query:  GFGWNDELKCIIVEKELFDNWVKSHHVAKYLLNRSFPHYDDLCYVFGKDCATRGHAETFVDVGSNVPR-GYDGFLADDGNDMEIPTMYNQ----------
        GF W++E + +  +  ++ +++K+H  A+  + R  P+Y DLC + G         E FV +    P   +  F +    D+ I                
Subjt:  GFGWNDELKCIIVEKELFDNWVKSHHVAKYLLNRSFPHYDDLCYVFGKDCATRGHAETFVDVGSNVPR-GYDGFLADDGNDMEIPTMYNQ----------

Query:  ------GLDMSPDDGIPKLSRLDRVPCMRILMRNVEDMKAFLDAPDELKLDYCTVI
                D SP +  PK  R+D    M I    VE ++A  D  DEL LD C ++
Subjt:  ------GLDMSPDDGIPKLSRLDRVPCMRILMRNVEDMKAFLDAPDELKLDYCTVI

Sequences

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CDS sequence

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ATGAGGGGTCCATCTTGCAGTGGGTTTGGTTGGAACGATGAACTCAAGTGCATTATAGTAGAGAAGGAATTGTTTGATAATTGGGTGAAGAGTCATCATGTTGCCAAATA
CCTCCTCAACAGATCCTTTCCCCATTACGACGACCTATGCTACGTGTTTGGAAAAGATTGTGCAACGAGAGGGCACGCTGAAACCTTTGTCGATGTTGGGTCCAATGTGC
CTAGAGGGTACGATGGATTCCTCGCTGATGACGGGAACGACATGGAGATCCCCACGATGTACAATCAGGGACTGGACATGTCACCTGACGATGGAATCCCAAAGCTTAGT
AGACTCGACAGGGTTCCTTGTATGCGTATATTGATGCGCAATGTGGAAGACATGAAAGCATTTCTAGACGCCCCGGACGAGCTTAAATTAGATTATTGCACAGTCATTCT
CCAAGATAACGCTTGA

mRNA sequence

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Protein sequence

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MRGPSCSGFGWNDELKCIIVEKELFDNWVKSHHVAKYLLNRSFPHYDDLCYVFGKDCATRGHAETFVDVGSNVPRGYDGFLADDGNDMEIPTMYNQGLDMSPDDGIPKLS
RLDRVPCMRILMRNVEDMKAFLDAPDELKLDYCTVILQDNA

PI0005289 (gene) of Melon (PI 482460) v1 genome