CuGenDBv2

Gene ID	PI0005298
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Ribonuclease H
Genome location	chr12:8291780..8292449
RNA-Seq Expression	PI0005298
Synteny	PI0005298
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006310 - DNA recombination (biological process) GO:0015074 - DNA integration (biological process) GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process) GO:0005634 - nucleus (cellular component) GO:0030430 - host cell cytoplasm (cellular component) GO:0003723 - RNA binding (molecular function) GO:0003887 - DNA-directed DNA polymerase activity (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0036950.1 uncharacterized protein E6C27_scaffold86G00300 [Cucumis melo var. makuwa]

4.5e-76

84.48

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Query:  EHCKEQDVEMPIIAKDVEYKKPVTDEEANKFLKLVKQSEYKIIEQMHHTPARVSLLSLFLNSKPYRKVLLDTLNKAHVG------KFSGIIGNITSSNSI
        EHCK+QDVEMPIIAKD+EYKK VTDEEAN+FLK+VKQSEYKIIEQMH+TPAR+SLLSLFLNS+P+RK+LLD LNKAHVG      KFSGIIGNITSSNSI
Subjt:  EHCKEQDVEMPIIAKDVEYKKPVTDEEANKFLKLVKQSEYKIIEQMHHTPARVSLLSLFLNSKPYRKVLLDTLNKAHVG------KFSGIIGNITSSNSI

Query:  VFMDDEIPPKGLGHTKALHIQVKCRDYVVARVLVDNGSTLNIMPKSTLLKLPVDMSHIKSNTMVVRAFDGSHRE
        VF DDEIPP+GLGHTKALHIQ+KC+DYV+ARVLVDNGS LNIMPKSTLL LPVDMSHIKS+TMVV+AFDGS RE
Subjt:  VFMDDEIPPKGLGHTKALHIQVKCRDYVVARVLVDNGSTLNIMPKSTLLKLPVDMSHIKSNTMVVRAFDGSHRE

KAA0037621.1 uncharacterized protein E6C27_scaffold277G002820 [Cucumis melo var. makuwa]

5.3e-77

84.66

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Query:  VNEHCKEQDVEMPIIAKDVEYKKPVTDEEANKFLKLVKQSEYKIIEQMHHTPARVSLLSLFLNSKPYRKVLLDTLNKAHVG------KFSGIIGNITSSN
        V EHCK+QDVEMPIIAKD+EYKK VTDEEAN+FLK+VKQSEYKIIEQMHHTPAR+SLLSLFLNS+P+RKVLLD LNKAHVG      KFSGIIGNIT  N
Subjt:  VNEHCKEQDVEMPIIAKDVEYKKPVTDEEANKFLKLVKQSEYKIIEQMHHTPARVSLLSLFLNSKPYRKVLLDTLNKAHVG------KFSGIIGNITSSN

Query:  SIVFMDDEIPPKGLGHTKALHIQVKCRDYVVARVLVDNGSTLNIMPKSTLLKLPVDMSHIKSNTMVVRAFDGSHRE
        SIVF DDEIPP+GLGHTKALHIQVKC+DYV+ARVLVDNGS LNIMPKSTLLKLPVDMSHIKS+TMVV+ FDGS RE
Subjt:  SIVFMDDEIPPKGLGHTKALHIQVKCRDYVVARVLVDNGSTLNIMPKSTLLKLPVDMSHIKSNTMVVRAFDGSHRE

KAA0046213.1 uncharacterized protein E6C27_scaffold284G00010 [Cucumis melo var. makuwa]

1.4e-77

85.23

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Query:  VNEHCKEQDVEMPIIAKDVEYKKPVTDEEANKFLKLVKQSEYKIIEQMHHTPARVSLLSLFLNSKPYRKVLLDTLNKAHVG------KFSGIIGNITSSN
        V EHCK+QDVEMPIIAKD+EYK  VTDEEAN+FLK+VKQSEYKIIEQMHHTPAR+SLLSLFLNS+P+RKVLLD LNKAHVG      KFSGIIGNITSSN
Subjt:  VNEHCKEQDVEMPIIAKDVEYKKPVTDEEANKFLKLVKQSEYKIIEQMHHTPARVSLLSLFLNSKPYRKVLLDTLNKAHVG------KFSGIIGNITSSN

Query:  SIVFMDDEIPPKGLGHTKALHIQVKCRDYVVARVLVDNGSTLNIMPKSTLLKLPVDMSHIKSNTMVVRAFDGSHRE
        SIVF DD+IPP+GLGHTKALHIQVKC+DYV+ARVLVDNGS LNIMPKSTLLKLPVDMSHIKS+TMVV+AFDGS RE
Subjt:  SIVFMDDEIPPKGLGHTKALHIQVKCRDYVVARVLVDNGSTLNIMPKSTLLKLPVDMSHIKSNTMVVRAFDGSHRE

KAA0067953.1 RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein [Cucumis melo var. makuwa]

3.4e-76

84.09

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Query:  VNEHCKEQDVEMPIIAKDVEYKKPVTDEEANKFLKLVKQSEYKIIEQMHHTPARVSLLSLFLNSKPYRKVLLDTLNKAHVG------KFSGIIGNITSSN
        V EHCK+QDVEMPIIAKD+EYKK VTDEEAN+FLK+VKQSEYKIIEQMHHTPAR+SLLSLFLNS+P+RKVLLD LNKAHVG      KFSGIIGNITSSN
Subjt:  VNEHCKEQDVEMPIIAKDVEYKKPVTDEEANKFLKLVKQSEYKIIEQMHHTPARVSLLSLFLNSKPYRKVLLDTLNKAHVG------KFSGIIGNITSSN

Query:  SIVFMDDEIPPKGLGHTKALHIQVKCRDYVVARVLVDNGSTLNIMPKSTLLKLPVDMSHIKSNTMVVRAFDGSHRE
         IVF DD+IPP+GLGHTKALHIQVKC+DYV+ARVLVDNGS LNIMPKSTLLKLPVDMSHIKS+TMVV+ F+GS RE
Subjt:  SIVFMDDEIPPKGLGHTKALHIQVKCRDYVVARVLVDNGSTLNIMPKSTLLKLPVDMSHIKSNTMVVRAFDGSHRE

TYK21788.1 uncharacterized protein E5676_scaffold1721G00440 [Cucumis melo var. makuwa]

1.3e-78

86.36

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Query:  VNEHCKEQDVEMPIIAKDVEYKKPVTDEEANKFLKLVKQSEYKIIEQMHHTPARVSLLSLFLNSKPYRKVLLDTLNKAHVG------KFSGIIGNITSSN
        V EHCK+QDVEMPIIAKD+EYKK VTDEEAN+FLK+VKQSEYKIIEQMHHTPAR+SLLSLFLNS+P+RKVLLD LNKAHVG      KFSGIIGNITSSN
Subjt:  VNEHCKEQDVEMPIIAKDVEYKKPVTDEEANKFLKLVKQSEYKIIEQMHHTPARVSLLSLFLNSKPYRKVLLDTLNKAHVG------KFSGIIGNITSSN

Query:  SIVFMDDEIPPKGLGHTKALHIQVKCRDYVVARVLVDNGSTLNIMPKSTLLKLPVDMSHIKSNTMVVRAFDGSHRE
        SIVF DDEIPP+GLGHTKALHIQVKC+DYV+ARVLVDNGS LNIMPKSTLLKLPVDMSHIKS+TMVV+AFDGS RE
Subjt:  SIVFMDDEIPPKGLGHTKALHIQVKCRDYVVARVLVDNGSTLNIMPKSTLLKLPVDMSHIKSNTMVVRAFDGSHRE

TrEMBL top hits

e value

%identity

Alignment

A0A5A7T0R1 Uncharacterized protein

2.2e-76

84.48

Show/hide

Query:  EHCKEQDVEMPIIAKDVEYKKPVTDEEANKFLKLVKQSEYKIIEQMHHTPARVSLLSLFLNSKPYRKVLLDTLNKAHVG------KFSGIIGNITSSNSI
        EHCK+QDVEMPIIAKD+EYKK VTDEEAN+FLK+VKQSEYKIIEQMH+TPAR+SLLSLFLNS+P+RK+LLD LNKAHVG      KFSGIIGNITSSNSI
Subjt:  EHCKEQDVEMPIIAKDVEYKKPVTDEEANKFLKLVKQSEYKIIEQMHHTPARVSLLSLFLNSKPYRKVLLDTLNKAHVG------KFSGIIGNITSSNSI

Query:  VFMDDEIPPKGLGHTKALHIQVKCRDYVVARVLVDNGSTLNIMPKSTLLKLPVDMSHIKSNTMVVRAFDGSHRE
        VF DDEIPP+GLGHTKALHIQ+KC+DYV+ARVLVDNGS LNIMPKSTLL LPVDMSHIKS+TMVV+AFDGS RE
Subjt:  VFMDDEIPPKGLGHTKALHIQVKCRDYVVARVLVDNGSTLNIMPKSTLLKLPVDMSHIKSNTMVVRAFDGSHRE

A0A5A7T7R4 Ribonuclease H

2.6e-77

84.66

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Query:  VNEHCKEQDVEMPIIAKDVEYKKPVTDEEANKFLKLVKQSEYKIIEQMHHTPARVSLLSLFLNSKPYRKVLLDTLNKAHVG------KFSGIIGNITSSN
        V EHCK+QDVEMPIIAKD+EYKK VTDEEAN+FLK+VKQSEYKIIEQMHHTPAR+SLLSLFLNS+P+RKVLLD LNKAHVG      KFSGIIGNIT  N
Subjt:  VNEHCKEQDVEMPIIAKDVEYKKPVTDEEANKFLKLVKQSEYKIIEQMHHTPARVSLLSLFLNSKPYRKVLLDTLNKAHVG------KFSGIIGNITSSN

Query:  SIVFMDDEIPPKGLGHTKALHIQVKCRDYVVARVLVDNGSTLNIMPKSTLLKLPVDMSHIKSNTMVVRAFDGSHRE
        SIVF DDEIPP+GLGHTKALHIQVKC+DYV+ARVLVDNGS LNIMPKSTLLKLPVDMSHIKS+TMVV+ FDGS RE
Subjt:  SIVFMDDEIPPKGLGHTKALHIQVKCRDYVVARVLVDNGSTLNIMPKSTLLKLPVDMSHIKSNTMVVRAFDGSHRE

A0A5A7TRL7 Ribonuclease H

6.7e-78

85.23

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Query:  VNEHCKEQDVEMPIIAKDVEYKKPVTDEEANKFLKLVKQSEYKIIEQMHHTPARVSLLSLFLNSKPYRKVLLDTLNKAHVG------KFSGIIGNITSSN
        V EHCK+QDVEMPIIAKD+EYK  VTDEEAN+FLK+VKQSEYKIIEQMHHTPAR+SLLSLFLNS+P+RKVLLD LNKAHVG      KFSGIIGNITSSN
Subjt:  VNEHCKEQDVEMPIIAKDVEYKKPVTDEEANKFLKLVKQSEYKIIEQMHHTPARVSLLSLFLNSKPYRKVLLDTLNKAHVG------KFSGIIGNITSSN

Query:  SIVFMDDEIPPKGLGHTKALHIQVKCRDYVVARVLVDNGSTLNIMPKSTLLKLPVDMSHIKSNTMVVRAFDGSHRE
        SIVF DD+IPP+GLGHTKALHIQVKC+DYV+ARVLVDNGS LNIMPKSTLLKLPVDMSHIKS+TMVV+AFDGS RE
Subjt:  SIVFMDDEIPPKGLGHTKALHIQVKCRDYVVARVLVDNGSTLNIMPKSTLLKLPVDMSHIKSNTMVVRAFDGSHRE

A0A5A7VIM6 RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein

1.7e-76

84.09

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Query:  VNEHCKEQDVEMPIIAKDVEYKKPVTDEEANKFLKLVKQSEYKIIEQMHHTPARVSLLSLFLNSKPYRKVLLDTLNKAHVG------KFSGIIGNITSSN
        V EHCK+QDVEMPIIAKD+EYKK VTDEEAN+FLK+VKQSEYKIIEQMHHTPAR+SLLSLFLNS+P+RKVLLD LNKAHVG      KFSGIIGNITSSN
Subjt:  VNEHCKEQDVEMPIIAKDVEYKKPVTDEEANKFLKLVKQSEYKIIEQMHHTPARVSLLSLFLNSKPYRKVLLDTLNKAHVG------KFSGIIGNITSSN

Query:  SIVFMDDEIPPKGLGHTKALHIQVKCRDYVVARVLVDNGSTLNIMPKSTLLKLPVDMSHIKSNTMVVRAFDGSHRE
         IVF DD+IPP+GLGHTKALHIQVKC+DYV+ARVLVDNGS LNIMPKSTLLKLPVDMSHIKS+TMVV+ F+GS RE
Subjt:  SIVFMDDEIPPKGLGHTKALHIQVKCRDYVVARVLVDNGSTLNIMPKSTLLKLPVDMSHIKSNTMVVRAFDGSHRE

A0A5D3DEB3 Retrotrans_gag domain-containing protein

6.1e-79

86.36

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Query:  VNEHCKEQDVEMPIIAKDVEYKKPVTDEEANKFLKLVKQSEYKIIEQMHHTPARVSLLSLFLNSKPYRKVLLDTLNKAHVG------KFSGIIGNITSSN
        V EHCK+QDVEMPIIAKD+EYKK VTDEEAN+FLK+VKQSEYKIIEQMHHTPAR+SLLSLFLNS+P+RKVLLD LNKAHVG      KFSGIIGNITSSN
Subjt:  VNEHCKEQDVEMPIIAKDVEYKKPVTDEEANKFLKLVKQSEYKIIEQMHHTPARVSLLSLFLNSKPYRKVLLDTLNKAHVG------KFSGIIGNITSSN

Query:  SIVFMDDEIPPKGLGHTKALHIQVKCRDYVVARVLVDNGSTLNIMPKSTLLKLPVDMSHIKSNTMVVRAFDGSHRE
        SIVF DDEIPP+GLGHTKALHIQVKC+DYV+ARVLVDNGS LNIMPKSTLLKLPVDMSHIKS+TMVV+AFDGS RE
Subjt:  SIVFMDDEIPPKGLGHTKALHIQVKCRDYVVARVLVDNGSTLNIMPKSTLLKLPVDMSHIKSNTMVVRAFDGSHRE

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGTGAATGAACACTGCAAAGAGCAGGATGTGGAGATGCCCATCATAGCTAAGGATGTAGAATACAAAAAGCCTGTTACTGATGAGGAAGCAAACAAATTCTTGAAATT
AGTAAAACAAAGTGAATATAAGATCATAGAGCAAATGCATCATACTCCAGCTCGAGTTTCTTTATTATCTTTGTTTTTGAATTCAAAGCCTTATCGCAAAGTGCTATTAG
ATACTTTGAACAAGGCACATGTTGGAAAATTCAGTGGAATTATTGGAAACATTACATCTTCAAATTCCATAGTCTTTATGGATGATGAAATTCCTCCTAAAGGTTTAGGT
CATACAAAAGCACTGCATATTCAAGTAAAGTGCAGAGACTACGTTGTAGCAAGAGTTTTAGTGGATAATGGATCAACTCTTAATATAATGCCTAAATCTACACTATTGAA
GCTTCCAGTGGACATGTCACACATAAAATCAAACACTATGGTTGTAAGAGCCTTTGATGGGTCACATAGAGAAGACGTCTTTGGATTCATTCTGCAGAAGTGGGGCCATC
CACATTGCATCAAAAATTGA

mRNA sequence

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Protein sequence

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MVNEHCKEQDVEMPIIAKDVEYKKPVTDEEANKFLKLVKQSEYKIIEQMHHTPARVSLLSLFLNSKPYRKVLLDTLNKAHVGKFSGIIGNITSSNSIVFMDDEIPPKGLG
HTKALHIQVKCRDYVVARVLVDNGSTLNIMPKSTLLKLPVDMSHIKSNTMVVRAFDGSHREDVFGFILQKWGHPHCIKN

PI0005298 (gene) of Melon (PI 482460) v1 genome