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PI0005304 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0005304
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr03:8901725..8901934
RNA-Seq ExpressionPI0005304
SyntenyPI0005304
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025278.1 retrotransposon protein [Cucumis melo var. makuwa]3.0e-0655.56Show/hide
Query:  MTSSLRAPKHTWTREEESTLVECLVELVSEGDGNRTTAHSDPITW
        M++S RAP+H WT+EEE T VECL++LVS G+GN     S  +TW
Subjt:  MTSSLRAPKHTWTREEESTLVECLVELVSEGDGNRTTAHSDPITW

KAA0035633.1 retrotransposon protein [Cucumis melo var. makuwa]2.3e-0662.22Show/hide
Query:  MTSSLRAPKHTWTREEESTLVECLVELVSEGDGNRTTAHSDPITW
        M +S RAP H WT++EE TLVECLV+LV   DGN T   SD ITW
Subjt:  MTSSLRAPKHTWTREEESTLVECLVELVSEGDGNRTTAHSDPITW

KAA0037606.1 retrotransposon protein [Cucumis melo var. makuwa]5.2e-0669.23Show/hide
Query:  MTSSLRAPKHTWTREEESTLVECLVELVSEGDGNRTTAH
        MT+S RAPKH WT+EEE TLVECLV+LVS   GN+T +H
Subjt:  MTSSLRAPKHTWTREEESTLVECLVELVSEGDGNRTTAH

KAA0042386.1 retrotransposon protein [Cucumis melo var. makuwa]5.2e-0679.41Show/hide
Query:  MTSSLRAPKHTWTREEESTLVECLVELVSEGDGN
        MT+S R PKH WT+EEE TLVECLVELVS GDGN
Subjt:  MTSSLRAPKHTWTREEESTLVECLVELVSEGDGN

KAA0056508.1 retrotransposon protein [Cucumis melo var. makuwa]2.0e-1071.11Show/hide
Query:  MTSSLRAPKHTWTREEESTLVECLVELVSEGDGNRTTAHSDPITW
        M++S RAP+H WT+EEE TL+ECLVELVS GDGNR  AHSD +TW
Subjt:  MTSSLRAPKHTWTREEESTLVECLVELVSEGDGNRTTAHSDPITW

TrEMBL top hitse value%identityAlignment
A0A5A7T630 Retrotransposon protein2.5e-0669.23Show/hide
Query:  MTSSLRAPKHTWTREEESTLVECLVELVSEGDGNRTTAH
        MT+S RAPKH WT+EEE TLVECLV+LVS   GN+T +H
Subjt:  MTSSLRAPKHTWTREEESTLVECLVELVSEGDGNRTTAH

A0A5D3CAP9 Retrotransposon protein1.5e-0655.56Show/hide
Query:  MTSSLRAPKHTWTREEESTLVECLVELVSEGDGNRTTAHSDPITW
        M++S RAP+H WT+EEE T VECL++LVS G+GN     S  +TW
Subjt:  MTSSLRAPKHTWTREEESTLVECLVELVSEGDGNRTTAHSDPITW

A0A5D3CLR3 Retrotransposon protein9.8e-1171.11Show/hide
Query:  MTSSLRAPKHTWTREEESTLVECLVELVSEGDGNRTTAHSDPITW
        M++S RAP+H WT+EEE TL+ECLVELVS GDGNR  AHSD +TW
Subjt:  MTSSLRAPKHTWTREEESTLVECLVELVSEGDGNRTTAHSDPITW

A0A5D3CX40 Retrotransposon protein2.5e-0679.41Show/hide
Query:  MTSSLRAPKHTWTREEESTLVECLVELVSEGDGN
        MT+S R PKH WT+EEE TLVECLVELVS GDGN
Subjt:  MTSSLRAPKHTWTREEESTLVECLVELVSEGDGN

A0A5D3E4X9 Retrotransposon protein1.1e-0662.22Show/hide
Query:  MTSSLRAPKHTWTREEESTLVECLVELVSEGDGNRTTAHSDPITW
        M +S RAP H WT++EE TLVECLV+LV   DGN T   SD ITW
Subjt:  MTSSLRAPKHTWTREEESTLVECLVELVSEGDGNRTTAHSDPITW

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACGTGCATTTATATTTTCTGTATATAGTTTGCTTAATATCCATCTTATGTTTCCTATTTGTTAGAATGACAAGTTCGTTGAGGGCCCCGAAGCATACATGGACCAG
AGAAGAAGAGTCAACCCTCGTGGAATGTCTGGTGGAGTTGGTCTCCGAGGGGGATGGAAATCGAACAACGGCACATTCCGACCCGATTACTTGGCAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGACGTGCATTTATATTTTCTGTATATAGTTTGCTTAATATCCATCTTATGTTTCCTATTTGTTAGAATGACAAGTTCGTTGAGGGCCCCGAAGCATACATGGACCAG
AGAAGAAGAGTCAACCCTCGTGGAATGTCTGGTGGAGTTGGTCTCCGAGGGGGATGGAAATCGAACAACGGCACATTCCGACCCGATTACTTGGCAATGA
Protein sequenceShow/hide protein sequence
MDVHLYFLYIVCLISILCFLFVRMTSSLRAPKHTWTREEESTLVECLVELVSEGDGNRTTAHSDPITWQ