CuGenDBv2

Gene ID	PI0005354
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Lipoxygenase
Genome location	chr05:22373258..22374012
RNA-Seq Expression	PI0005354
Synteny	PI0005354
Gene Ontology terms	GO:0006289 - nucleotide-excision repair (biological process) GO:0006360 - transcription by RNA polymerase I (biological process) GO:0006633 - fatty acid biosynthetic process (biological process) GO:0031408 - oxylipin biosynthetic process (biological process) GO:0070816 - phosphorylation of RNA polymerase II C-terminal domain (biological process) GO:0000439 - transcription factor TFIIH core complex (cellular component) GO:0005675 - transcription factor TFIIH holo complex (cellular component) GO:0005737 - cytoplasm (cellular component) GO:0016702 - oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen (molecular function) GO:0046872 - metal ion binding (molecular function)
InterPro domains	IPR000907 - Lipoxygenase IPR013819 - Lipoxygenase, C-terminal IPR036226 - Lipoxigenase, C-terminal domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0041373.1 lipoxygenase 2 [Cucumis melo var. makuwa]

1.2e-21

85.94

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Query:  EPSISDAFEEFKANLKDLEKEIDKLNENKDLKNRYGAGIIPYEVMKPHSKPGITGSGVPYSVSI
        +PSIS+AFE+FKANL  LEK+ID+LN+NKDLKNRYGAGIIPYEVMKP SKPGITGSGVPYSVSI
Subjt:  EPSISDAFEEFKANLKDLEKEIDKLNENKDLKNRYGAGIIPYEVMKPHSKPGITGSGVPYSVSI

KGN54487.2 hypothetical protein Csa_017864 [Cucumis sativus]

3.1e-20

82.81

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Query:  EPSISDAFEEFKANLKDLEKEIDKLNENKDLKNRYGAGIIPYEVMKPHSKPGITGSGVPYSVSI
        + SIS AFE+FKA L DLEK+ID+LNENKDLKNRYGAGIIPYEVMKP SKPG+TG GVPYSVSI
Subjt:  EPSISDAFEEFKANLKDLEKEIDKLNENKDLKNRYGAGIIPYEVMKPHSKPGITGSGVPYSVSI

TYK21644.1 lipoxygenase 2 [Cucumis melo var. makuwa]

1.2e-21

85.94

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Query:  EPSISDAFEEFKANLKDLEKEIDKLNENKDLKNRYGAGIIPYEVMKPHSKPGITGSGVPYSVSI
        +PSIS+AFE+FKANL  LEK+ID+LN+NKDLKNRYGAGIIPYEVMKP SKPGITGSGVPYSVSI
Subjt:  EPSISDAFEEFKANLKDLEKEIDKLNENKDLKNRYGAGIIPYEVMKPHSKPGITGSGVPYSVSI

XP_004142238.3 lipoxygenase 2, chloroplastic [Cucumis sativus]

2.1e-21

84.38

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Query:  EPSISDAFEEFKANLKDLEKEIDKLNENKDLKNRYGAGIIPYEVMKPHSKPGITGSGVPYSVSI
        +PSIS+AFE+FKANL DLEK+ID+LN+NKDLKNRYGA IIPYE MKP SKPGITGSGVPYSVSI
Subjt:  EPSISDAFEEFKANLKDLEKEIDKLNENKDLKNRYGAGIIPYEVMKPHSKPGITGSGVPYSVSI

XP_008449947.1 PREDICTED: lipoxygenase 2, chloroplastic-like, partial [Cucumis melo]

1.2e-21

85.94

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Query:  EPSISDAFEEFKANLKDLEKEIDKLNENKDLKNRYGAGIIPYEVMKPHSKPGITGSGVPYSVSI
        +PSIS+AFE+FKANL  LEK+ID+LN+NKDLKNRYGAGIIPYEVMKP SKPGITGSGVPYSVSI
Subjt:  EPSISDAFEEFKANLKDLEKEIDKLNENKDLKNRYGAGIIPYEVMKPHSKPGITGSGVPYSVSI

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KWY1 Lipoxygenase domain-containing protein

1.0e-21

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Query:  MAKRKTDSQGREPSISDAFEEFKANLKDLEKEIDKLNENKDLKNRYGAGIIPYEVMKPHSKPGITGSGVPYSVSI
        MA+ K D++  EP IS AFE FKA L DLEK I++LNENKDLKNR GAGIIPYE MKP SKPGITGSGVPYSVSI
Subjt:  MAKRKTDSQGREPSISDAFEEFKANLKDLEKEIDKLNENKDLKNRYGAGIIPYEVMKPHSKPGITGSGVPYSVSI

A0A0A0KZ93 Lipoxygenase domain-containing protein

3.0e-21

84.38

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Query:  EPSISDAFEEFKANLKDLEKEIDKLNENKDLKNRYGAGIIPYEVMKPHSKPGITGSGVPYSVSI
        + SIS AFE+FKANL DLEK+ID+LNENKDLKNRYGAGIIPYEVMKP SKPG+TG GVPYSVSI
Subjt:  EPSISDAFEEFKANLKDLEKEIDKLNENKDLKNRYGAGIIPYEVMKPHSKPGITGSGVPYSVSI

A0A1S3BNU6 lipoxygenase 2, chloroplastic-like

6.0e-22

85.94

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Query:  EPSISDAFEEFKANLKDLEKEIDKLNENKDLKNRYGAGIIPYEVMKPHSKPGITGSGVPYSVSI
        +PSIS+AFE+FKANL  LEK+ID+LN+NKDLKNRYGAGIIPYEVMKP SKPGITGSGVPYSVSI
Subjt:  EPSISDAFEEFKANLKDLEKEIDKLNENKDLKNRYGAGIIPYEVMKPHSKPGITGSGVPYSVSI

A0A5A7TDY8 Lipoxygenase

6.0e-22

85.94

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Query:  EPSISDAFEEFKANLKDLEKEIDKLNENKDLKNRYGAGIIPYEVMKPHSKPGITGSGVPYSVSI
        +PSIS+AFE+FKANL  LEK+ID+LN+NKDLKNRYGAGIIPYEVMKP SKPGITGSGVPYSVSI
Subjt:  EPSISDAFEEFKANLKDLEKEIDKLNENKDLKNRYGAGIIPYEVMKPHSKPGITGSGVPYSVSI

A0A5D3DDH6 Lipoxygenase 2

6.0e-22

85.94

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Query:  EPSISDAFEEFKANLKDLEKEIDKLNENKDLKNRYGAGIIPYEVMKPHSKPGITGSGVPYSVSI
        +PSIS+AFE+FKANL  LEK+ID+LN+NKDLKNRYGAGIIPYEVMKP SKPGITGSGVPYSVSI
Subjt:  EPSISDAFEEFKANLKDLEKEIDKLNENKDLKNRYGAGIIPYEVMKPHSKPGITGSGVPYSVSI

SwissProt top hits

e value

%identity

Alignment

O24370 Linoleate 13S-lipoxygenase 2-1, chloroplastic

4.5e-14

56.25

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Query:  EPSISDAFEEFKANLKDLEKEIDKLNENKDLKNRYGAGIIPYEVMKPHSKPGITGSGVPYSVSI
        +P I+ AFE F   LK+LE  ID  N +  L NR GAG++PYE++KP+S+PG+TG GVPYS+SI
Subjt:  EPSISDAFEEFKANLKDLEKEIDKLNENKDLKNRYGAGIIPYEVMKPHSKPGITGSGVPYSVSI

P38418 Lipoxygenase 2, chloroplastic

6.4e-13

50.67

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Query:  MAKRKTDSQGREPSISDAFEEFKANLKDLEKEIDKLNENKDLKNRYGAGIIPYEVMKPHSKPGITGSGVPYSVSI
        + +++  S   EP I+ AFE FK  L+ LE  ID+ N N  LKNR GAG++ YE++KP S+ G+TG GVPYS+SI
Subjt:  MAKRKTDSQGREPSISDAFEEFKANLKDLEKEIDKLNENKDLKNRYGAGIIPYEVMKPHSKPGITGSGVPYSVSI

Q8GSM2 Lipoxygenase 2.3, chloroplastic

1.3e-13

54.69

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Query:  EPSISDAFEEFKANLKDLEKEIDKLNENKDLKNRYGAGIIPYEVMKPHSKPGITGSGVPYSVSI
        EP +  AFE+F   LK+ E  ID  N N + KNR GAGI+PYE++KP S+PG+TG G+P S+SI
Subjt:  EPSISDAFEEFKANLKDLEKEIDKLNENKDLKNRYGAGIIPYEVMKPHSKPGITGSGVPYSVSI

R9WS04 Lipoxygenase 2, chloroplastic

7.1e-12

53.12

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Query:  EPSISDAFEEFKANLKDLEKEIDKLNENKDLKNRYGAGIIPYEVMKPHSKPGITGSGVPYSVSI
        EP+I  AFEEF   LK L+  ID  N +  L+NR GAG++ Y+++KP S  G+TG GVPYS+SI
Subjt:  EPSISDAFEEFKANLKDLEKEIDKLNENKDLKNRYGAGIIPYEVMKPHSKPGITGSGVPYSVSI

R9WTS6 Lipoxygenase 1, chloroplastic

1.6e-11

46.58

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Query:  KRKTDSQGREPSISDAFEEFKANLKDLEKEIDKLNENKDLKNRYGAGIIPYEVMKPHSKPGITGSGVPYSVSI
        +++TD+   +  I +AF  F A ++ +EKEI+K N +  LKNR GAG++PYE++ P S PG T  GVP S+SI
Subjt:  KRKTDSQGREPSISDAFEEFKANLKDLEKEIDKLNENKDLKNRYGAGIIPYEVMKPHSKPGITGSGVPYSVSI

Arabidopsis top hits

e value

%identity

Alignment

AT1G17420.1 lipoxygenase 3

2.1e-11

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Query:  EPSISDAFEEFKANLKDLEKEIDKLNENKDLKNRYGAGIIPYEVMKPHSKPGITGSGVPYSVSI
        +  I +AF  F A +  +EKEI+K N + D +NR GAG++PYE++ P S+PG+T  GVP SVSI
Subjt:  EPSISDAFEEFKANLKDLEKEIDKLNENKDLKNRYGAGIIPYEVMKPHSKPGITGSGVPYSVSI

AT1G55020.1 lipoxygenase 1

6.8e-10

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Query:  MAKRKTDSQGREPSISDAFEEFKANLKDLEKEIDKLNENKDLKNRYGAGIIPYEVMKPHSKPGITGSGVPYSVSI
        + +R +     E    +AFE+F   +K++EK ID+ N+++ LKNR G   +PY ++ P S+ G+TG G+P SVSI
Subjt:  MAKRKTDSQGREPSISDAFEEFKANLKDLEKEIDKLNENKDLKNRYGAGIIPYEVMKPHSKPGITGSGVPYSVSI

AT1G67560.1 PLAT/LH2 domain-containing lipoxygenase family protein

2.0e-09

49.12

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Query:  FEEFKANLKDLEKEIDKLNENKDLKNRYGAGIIPYEVMKPHSKPGITGSGVPYSVSI
        F +F   L  +EK I++ N++K LKNR GAG+ PYE++ P S  G+TG G+P S+SI
Subjt:  FEEFKANLKDLEKEIDKLNENKDLKNRYGAGIIPYEVMKPHSKPGITGSGVPYSVSI

AT1G72520.1 PLAT/LH2 domain-containing lipoxygenase family protein

2.5e-12

53.12

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Query:  EPSISDAFEEFKANLKDLEKEIDKLNENKDLKNRYGAGIIPYEVMKPHSKPGITGSGVPYSVSI
        +  I DAF  F A +  +EKEIDK N +   +NR GAG++PYE+M P S+PG+T  GVP SVSI
Subjt:  EPSISDAFEEFKANLKDLEKEIDKLNENKDLKNRYGAGIIPYEVMKPHSKPGITGSGVPYSVSI

AT3G45140.1 lipoxygenase 2

4.6e-14

50.67

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Query:  MAKRKTDSQGREPSISDAFEEFKANLKDLEKEIDKLNENKDLKNRYGAGIIPYEVMKPHSKPGITGSGVPYSVSI
        + +++  S   EP I+ AFE FK  L+ LE  ID+ N N  LKNR GAG++ YE++KP S+ G+TG GVPYS+SI
Subjt:  MAKRKTDSQGREPSISDAFEEFKANLKDLEKEIDKLNENKDLKNRYGAGIIPYEVMKPHSKPGITGSGVPYSVSI

Sequences

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CDS sequence

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ATGGCGAAAAGAAAAACAGATTCACAAGGTCGTGAGCCCTCCATAAGTGATGCCTTCGAAGAGTTTAAAGCCAACTTGAAGGATCTAGAAAAGGAGATTGACAAACTTAA
TGAGAATAAAGATTTGAAGAATAGGTATGGAGCTGGGATTATACCTTACGAAGTTATGAAACCACATTCAAAGCCTGGGATCACTGGAAGTGGAGTTCCATACAGCGTCT
CCATTTAA

mRNA sequence

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Protein sequence

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MAKRKTDSQGREPSISDAFEEFKANLKDLEKEIDKLNENKDLKNRYGAGIIPYEVMKPHSKPGITGSGVPYSVSI

PI0005354 (gene) of Melon (PI 482460) v1 genome