; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0005369 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0005369
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr08:6705488..6707240
RNA-Seq ExpressionPI0005369
SyntenyPI0005369
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0057475.1 uncharacterized protein E6C27_scaffold280G003560 [Cucumis melo var. makuwa]1.5e-1050Show/hide
Query:  SFAHSETITDPNWYANSEASSHVTSDYNNLTNLTEYSGNELVIVEDENELAIIHVGSSTLHHDNGSLKLQNVLCVPAITKNL
        S A  ET+ D N Y +S A++HVTSD++NL N+ +YSGNE V+V +EN+L I  VG ++L      L+L  +LCVP I KNL
Subjt:  SFAHSETITDPNWYANSEASSHVTSDYNNLTNLTEYSGNELVIVEDENELAIIHVGSSTLHHDNGSLKLQNVLCVPAITKNL

TYK05754.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]1.2e-1043.01Show/hide
Query:  FAHSETITDPNWYANSEASSHVTSDYNNLTNLTEYSGNELVIVEDENELAIIHVGSSTLHHDNGSLKLQNVLCVPAITKNLVAPSSLLHHHSL
        FA ++T+ + NWY +S A++H+T +Y+NL+N +EYSG E ++V + + L I ++G++ L      L L+NVLCVP ITKNLV+ S L   +++
Subjt:  FAHSETITDPNWYANSEASSHVTSDYNNLTNLTEYSGNELVIVEDENELAIIHVGSSTLHHDNGSLKLQNVLCVPAITKNLVAPSSLLHHHSL

XP_016901889.1 PREDICTED: uncharacterized protein LOC107991455 [Cucumis melo]1.3e-1250.51Show/hide
Query:  QNNYQSFAHSETITDPNWYANSEASSHVTSDYNNLTNLTEYSGNELVIVEDENELAIIHVGSSTLHHDNGSLKLQNVLCVPAITKNLVAPSSLLHHHSL
        QNN   FA  E + D NWY +S A+++VT DY NL+N+TEYS  E   V + N+L I  VG+  L   N SLKL+NVLCVP ITKNLV+ S L   +++
Subjt:  QNNYQSFAHSETITDPNWYANSEASSHVTSDYNNLTNLTEYSGNELVIVEDENELAIIHVGSSTLHHDNGSLKLQNVLCVPAITKNLVAPSSLLHHHSL

XP_016902197.1 PREDICTED: uncharacterized protein LOC107991581 isoform X1 [Cucumis melo]1.3e-1249.45Show/hide
Query:  NYQSFAHSETITDPNWYANSEASSHVTSDYNNLTNLTEYSGNELVIVEDENELAIIHVGSSTLHHDNGSLKLQNVLCVPAITKNLVAPSSL
        N   FA  +T+ DPNWY +S A++HVT + +N+TN TEYSG E V V + N L I +VG++ L   + SL L+N+LCVP I KNL++ S L
Subjt:  NYQSFAHSETITDPNWYANSEASSHVTSDYNNLTNLTEYSGNELVIVEDENELAIIHVGSSTLHHDNGSLKLQNVLCVPAITKNLVAPSSL

XP_022151683.1 uncharacterized protein LOC111019598 [Momordica charantia]5.6e-1354.55Show/hide
Query:  ETITDPNWYANSEASSHVTSDYNNLTNLTEYSGNELVIVEDENELAIIHVGSSTLHHDNGSLKLQNVLCVPAITKNL
        ET+ DP+WYA+S A+SHVT++ NN+    +YSG E VIV + N+L+I H+GS+ +H   GSLKL++VL VP I KNL
Subjt:  ETITDPNWYANSEASSHVTSDYNNLTNLTEYSGNELVIVEDENELAIIHVGSSTLHHDNGSLKLQNVLCVPAITKNL

TrEMBL top hitse value%identityAlignment
A0A1S4E0Z3 uncharacterized protein LOC1079914556.1e-1350.51Show/hide
Query:  QNNYQSFAHSETITDPNWYANSEASSHVTSDYNNLTNLTEYSGNELVIVEDENELAIIHVGSSTLHHDNGSLKLQNVLCVPAITKNLVAPSSLLHHHSL
        QNN   FA  E + D NWY +S A+++VT DY NL+N+TEYS  E   V + N+L I  VG+  L   N SLKL+NVLCVP ITKNLV+ S L   +++
Subjt:  QNNYQSFAHSETITDPNWYANSEASSHVTSDYNNLTNLTEYSGNELVIVEDENELAIIHVGSSTLHHDNGSLKLQNVLCVPAITKNLVAPSSLLHHHSL

A0A1S4E1U6 uncharacterized protein LOC107991581 isoform X16.1e-1349.45Show/hide
Query:  NYQSFAHSETITDPNWYANSEASSHVTSDYNNLTNLTEYSGNELVIVEDENELAIIHVGSSTLHHDNGSLKLQNVLCVPAITKNLVAPSSL
        N   FA  +T+ DPNWY +S A++HVT + +N+TN TEYSG E V V + N L I +VG++ L   + SL L+N+LCVP I KNL++ S L
Subjt:  NYQSFAHSETITDPNWYANSEASSHVTSDYNNLTNLTEYSGNELVIVEDENELAIIHVGSSTLHHDNGSLKLQNVLCVPAITKNLVAPSSL

A0A6J1DCW4 uncharacterized protein LOC1110195982.7e-1354.55Show/hide
Query:  ETITDPNWYANSEASSHVTSDYNNLTNLTEYSGNELVIVEDENELAIIHVGSSTLHHDNGSLKLQNVLCVPAITKNL
        ET+ DP+WYA+S A+SHVT++ NN+    +YSG E VIV + N+L+I H+GS+ +H   GSLKL++VL VP I KNL
Subjt:  ETITDPNWYANSEASSHVTSDYNNLTNLTEYSGNELVIVEDENELAIIHVGSSTLHHDNGSLKLQNVLCVPAITKNL

A0A6N2L1Z6 gag_pre-integrs domain-containing protein2.6e-1135.54Show/hide
Query:  ETITDPNWYANSEASSHVTSDYNNLTNLTEYSGNELVIVEDENELAIIHVGSSTLHHDNGSLKLQNVLCVPAITKNLVAPSSLL----------------
        + + +P W+ +S A+SH+T+    L +  EY+GNE V+V +   L I H+GS +    + S+ L NVL VP I KNL++ S L                 
Subjt:  ETITDPNWYANSEASSHVTSDYNNLTNLTEYSGNELVIVEDENELAIIHVGSSTLHHDNGSLKLQNVLCVPAITKNLVAPSSLL----------------

Query:  ------------HHHSLSPQSPTCSSHPDASIILVEIPLTPPPIFHAPPLS--HPMVTRGKAGIFK
                    HHH+L P+ P  SS   AS     +P   P   H P  S  HPM+TRGKAGI K
Subjt:  ------------HHHSLSPQSPTCSSHPDASIILVEIPLTPPPIFHAPPLS--HPMVTRGKAGIFK

A0A803NYU4 Uncharacterized protein2.6e-1144.94Show/hide
Query:  FAHSETITDPNWYANSEASSHVTSDYNNLTNLTEYSGNELVIVEDENELAIIHVGSSTL--HHDNGSLKLQNVLCVPAITKNLVAPSSL
        FA  ET+ DP WYA+S A+ H+T+D+NNLT   +Y G++  +V ++  + I H GS++L  HH   ++ L NVLCVP I K+L++ S L
Subjt:  FAHSETITDPNWYANSEASSHVTSDYNNLTNLTEYSGNELVIVEDENELAIIHVGSSTL--HHDNGSLKLQNVLCVPAITKNLVAPSSL

SwissProt top hitse value%identityAlignment
Q94HW2 Retrovirus-related Pol polyprotein from transposon RE12.0e-0839.29Show/hide
Query:  NWYANSEASSHVTSDYNNLTNLTEYSGNELVIVEDENELAIIHVGSSTLHHDNGSLKLQNVLCVPAITKNLVAPSSLLHHHSLS
        NW  +S A+ H+TSD+NNL+    Y+G + V+V D + + I H GS++L   +  L L N+L VP I KNL++   L + + +S
Subjt:  NWYANSEASSHVTSDYNNLTNLTEYSGNELVIVEDENELAIIHVGSSTLHHDNGSLKLQNVLCVPAITKNLVAPSSLLHHHSLS

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE23.3e-0839.29Show/hide
Query:  NWYANSEASSHVTSDYNNLTNLTEYSGNELVIVEDENELAIIHVGSSTLHHDNGSLKLQNVLCVPAITKNLVAPSSLLHHHSLS
        NW  +S A+ H+TSD+NNL+    Y+G + V++ D + + I H GS++L   + SL L  VL VP I KNL++   L + + +S
Subjt:  NWYANSEASSHVTSDYNNLTNLTEYSGNELVIVEDENELAIIHVGSSTLHHDNGSLKLQNVLCVPAITKNLVAPSSLLHHHSLS

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTCATCAGAACAACTATCAGTCATTTGCACATTCTGAAACCATAACTGACCCCAACTGGTATGCTAATAGTGAAGCATCAAGTCATGTTACCTCAGATTATAACAA
CCTGACCAATTTAACTGAATATTCAGGTAATGAGTTAGTTATTGTGGAAGATGAAAATGAATTGGCTATAATTCATGTTGGTAGCTCTACATTACACCATGACAATGGTT
CTTTAAAACTTCAAAATGTCCTCTGTGTACCTGCTATAACTAAGAACTTGGTTGCCCCTTCATCCTTACTTCACCATCACTCTCTTTCCCCCCAATCTCCCACATGCTCA
TCACATCCAGATGCCTCAATCATTCTAGTCGAAATACCCCTAACCCCACCACCTATTTTCCATGCTCCTCCGCTATCTCATCCGATGGTAACTCGAGGCAAAGCTGGAAT
ATTCAAGCAAAAGGCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCTCATCAGAACAACTATCAGTCATTTGCACATTCTGAAACCATAACTGACCCCAACTGGTATGCTAATAGTGAAGCATCAAGTCATGTTACCTCAGATTATAACAA
CCTGACCAATTTAACTGAATATTCAGGTAATGAGTTAGTTATTGTGGAAGATGAAAATGAATTGGCTATAATTCATGTTGGTAGCTCTACATTACACCATGACAATGGTT
CTTTAAAACTTCAAAATGTCCTCTGTGTACCTGCTATAACTAAGAACTTGGTTGCCCCTTCATCCTTACTTCACCATCACTCTCTTTCCCCCCAATCTCCCACATGCTCA
TCACATCCAGATGCCTCAATCATTCTAGTCGAAATACCCCTAACCCCACCACCTATTTTCCATGCTCCTCCGCTATCTCATCCGATGGTAACTCGAGGCAAAGCTGGAAT
ATTCAAGCAAAAGGCCTAG
Protein sequenceShow/hide protein sequence
MAHQNNYQSFAHSETITDPNWYANSEASSHVTSDYNNLTNLTEYSGNELVIVEDENELAIIHVGSSTLHHDNGSLKLQNVLCVPAITKNLVAPSSLLHHHSLSPQSPTCS
SHPDASIILVEIPLTPPPIFHAPPLSHPMVTRGKAGIFKQKA