; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0005378 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0005378
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionGag/pol protein
Genome locationchr07:7613983..7614567
RNA-Seq ExpressionPI0005378
SyntenyPI0005378
Gene Ontology termsGO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008234 - cysteine-type peptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026233.1 gag/pol protein [Cucumis melo var. makuwa]1.3e-5966Show/hide
Query:  MEECPPSPSQNASQTVRDAYDRWTKANDKARVYILASMSDVLIKKHETMVTARQIMDSLQEMFGQPSTQIWQEAIKHVYNARLNEGQSIREHVLDLIVHF
        +E+CP  P+ NA++TVR+ Y+RW KAN+KAR YILAS+S+VL KKHE+M+TAR+IMDSLQEMFGQ S QI  +A+K++YNAR+NEG S+REHVL+++VHF
Subjt:  MEECPPSPSQNASQTVRDAYDRWTKANDKARVYILASMSDVLIKKHETMVTARQIMDSLQEMFGQPSTQIWQEAIKHVYNARLNEGQSIREHVLDLIVHF

Query:  -----NEAVFDEKSQVSFILKSLLKSFLQFCSNTVMNKIEYNMTSLLNELQIFQSLMNNEGQKEGEANVAHS-RRFQKDSSSGTKSAPSFSGTKKIQKKK
             NEAV DE SQVSFIL+SL +SFLQF SN VMNKI Y +T+LLNELQ F+SLM  +GQK GEANVA S R+F + S+SGTKS PS SG KK +KKK
Subjt:  -----NEAVFDEKSQVSFILKSLLKSFLQFCSNTVMNKIEYNMTSLLNELQIFQSLMNNEGQKEGEANVAHS-RRFQKDSSSGTKSAPSFSGTKKIQKKK
KAA0061339.1 gag/pol protein [Cucumis melo var. makuwa]1.3e-5966.5Show/hide
Query:  MEECPPSPSQNASQTVRDAYDRWTKANDKARVYILASMSDVLIKKHETMVTARQIMDSLQEMFGQPSTQIWQEAIKHVYNARLNEGQSIREHVLDLIVHF
        +EECP  P+ NA+QTVR+ Y+RW KAN+KAR YILAS+S+VL KKHE+M+TAR+IMDSLQEMFGQ S QI  +A+K++YNAR+NEG S+REHVL+++VHF
Subjt:  MEECPPSPSQNASQTVRDAYDRWTKANDKARVYILASMSDVLIKKHETMVTARQIMDSLQEMFGQPSTQIWQEAIKHVYNARLNEGQSIREHVLDLIVHF

Query:  -----NEAVFDEKSQVSFILKSLLKSFLQFCSNTVMNKIEYNMTSLLNELQIFQSLMNNEGQKEGEANVAHS-RRFQKDSSSGTKSAPSFSGTKKIQKKK
             N AV DE SQVSFIL+SL +SFLQF SN VMNKI Y +T+LLNELQ F+SLM  +GQK GEANVA S R+F + S+SGTKS PS SG KK +KKK
Subjt:  -----NEAVFDEKSQVSFILKSLLKSFLQFCSNTVMNKIEYNMTSLLNELQIFQSLMNNEGQKEGEANVAHS-RRFQKDSSSGTKSAPSFSGTKKIQKKK
KAA0063887.1 gag/pol protein [Cucumis melo var. makuwa]2.7e-6076.05Show/hide
Query:  MEECPPSPSQNASQTVRDAYDRWTKANDKARVYILASMSDVLIKKHETMVTARQIMDSLQEMFGQPSTQIWQEAIKHVYNARLNEGQSIREHVLDLIVHF
        MEECPP P+QNASQ+V+DAYD WTKANDKA +Y+LAS+SD+L KKHE MVTARQIMDSL+EMFGQPS QI QEAIK+VYNAR+ EGQS+REHVL +IV+F
Subjt:  MEECPPSPSQNASQTVRDAYDRWTKANDKARVYILASMSDVLIKKHETMVTARQIMDSLQEMFGQPSTQIWQEAIKHVYNARLNEGQSIREHVLDLIVHF

Query:  -----NEAVFDEKSQVSFILKSLLKSFLQFCSNTVMNKIEYNMTSLLNELQIFQSLMNNEGQKEGEA
             N+A+FDEKSQVS+ILKSL KSFLQFCSN  MNKIEYNMT+LL ELQ FQSL   +GQKEGEA
Subjt:  -----NEAVFDEKSQVSFILKSLLKSFLQFCSNTVMNKIEYNMTSLLNELQIFQSLMNNEGQKEGEA
TYK15919.1 gag/pol protein [Cucumis melo var. makuwa]2.7e-6076.05Show/hide
Query:  MEECPPSPSQNASQTVRDAYDRWTKANDKARVYILASMSDVLIKKHETMVTARQIMDSLQEMFGQPSTQIWQEAIKHVYNARLNEGQSIREHVLDLIVHF
        MEECPP P+QNASQ+V+DAYD WTKANDKA +Y+LAS+SD+L KKHE MVTARQIMDSL+EMFGQPS QI QEAIK+VYNAR+ EGQS+REHVL +IV+F
Subjt:  MEECPPSPSQNASQTVRDAYDRWTKANDKARVYILASMSDVLIKKHETMVTARQIMDSLQEMFGQPSTQIWQEAIKHVYNARLNEGQSIREHVLDLIVHF

Query:  -----NEAVFDEKSQVSFILKSLLKSFLQFCSNTVMNKIEYNMTSLLNELQIFQSLMNNEGQKEGEA
             N+A+FDEKSQVS+ILKSL KSFLQFCSN  MNKIEYNMT+LL ELQ FQSL   +GQKEGEA
Subjt:  -----NEAVFDEKSQVSFILKSLLKSFLQFCSNTVMNKIEYNMTSLLNELQIFQSLMNNEGQKEGEA
TYK21841.1 gag/pol protein [Cucumis melo var. makuwa]1.0e-5973.99Show/hide
Query:  MEECPPSPSQNASQTVRDAYDRWTKANDKARVYILASMSDVLIKKHETMVTARQIMDSLQEMFGQPSTQIWQEAIKHVYNARLNEGQSIREHVLDLIVHF
        M+ECPP P+QNASQ+V+D YDRWTKANDKARVYILASMSD+L KKHE MVTA QIMDSL+EMFGQ S QI Q+AIK+VYNA + EGQS+R+HV+D+IVHF
Subjt:  MEECPPSPSQNASQTVRDAYDRWTKANDKARVYILASMSDVLIKKHETMVTARQIMDSLQEMFGQPSTQIWQEAIKHVYNARLNEGQSIREHVLDLIVHF

Query:  NEA-----VFDEKSQVSFILKSLLKSFLQFCSNTVMNKIEYNMTSLLNELQIFQSLMNNEGQKEGEANVAHSR
        N A     VFDEKSQ+SFILKSL KSFLQF SN  MNKI YNMT+ L EL  FQSL   +GQKEGEANV HSR
Subjt:  NEA-----VFDEKSQVSFILKSLLKSFLQFCSNTVMNKIEYNMTSLLNELQIFQSLMNNEGQKEGEANVAHSR
TrEMBL top hitse value%identityAlignment
A0A5A7SNP8 Gag/pol protein6.5e-6066Show/hide
Query:  MEECPPSPSQNASQTVRDAYDRWTKANDKARVYILASMSDVLIKKHETMVTARQIMDSLQEMFGQPSTQIWQEAIKHVYNARLNEGQSIREHVLDLIVHF
        +E+CP  P+ NA++TVR+ Y+RW KAN+KAR YILAS+S+VL KKHE+M+TAR+IMDSLQEMFGQ S QI  +A+K++YNAR+NEG S+REHVL+++VHF
Subjt:  MEECPPSPSQNASQTVRDAYDRWTKANDKARVYILASMSDVLIKKHETMVTARQIMDSLQEMFGQPSTQIWQEAIKHVYNARLNEGQSIREHVLDLIVHF

Query:  -----NEAVFDEKSQVSFILKSLLKSFLQFCSNTVMNKIEYNMTSLLNELQIFQSLMNNEGQKEGEANVAHS-RRFQKDSSSGTKSAPSFSGTKKIQKKK
             NEAV DE SQVSFIL+SL +SFLQF SN VMNKI Y +T+LLNELQ F+SLM  +GQK GEANVA S R+F + S+SGTKS PS SG KK +KKK
Subjt:  -----NEAVFDEKSQVSFILKSLLKSFLQFCSNTVMNKIEYNMTSLLNELQIFQSLMNNEGQKEGEANVAHS-RRFQKDSSSGTKSAPSFSGTKKIQKKK
A0A5A7V6N0 Gag/pol protein6.5e-6066.5Show/hide
Query:  MEECPPSPSQNASQTVRDAYDRWTKANDKARVYILASMSDVLIKKHETMVTARQIMDSLQEMFGQPSTQIWQEAIKHVYNARLNEGQSIREHVLDLIVHF
        +EECP  P+ NA+QTVR+ Y+RW KAN+KAR YILAS+S+VL KKHE+M+TAR+IMDSLQEMFGQ S QI  +A+K++YNAR+NEG S+REHVL+++VHF
Subjt:  MEECPPSPSQNASQTVRDAYDRWTKANDKARVYILASMSDVLIKKHETMVTARQIMDSLQEMFGQPSTQIWQEAIKHVYNARLNEGQSIREHVLDLIVHF

Query:  -----NEAVFDEKSQVSFILKSLLKSFLQFCSNTVMNKIEYNMTSLLNELQIFQSLMNNEGQKEGEANVAHS-RRFQKDSSSGTKSAPSFSGTKKIQKKK
             N AV DE SQVSFIL+SL +SFLQF SN VMNKI Y +T+LLNELQ F+SLM  +GQK GEANVA S R+F + S+SGTKS PS SG KK +KKK
Subjt:  -----NEAVFDEKSQVSFILKSLLKSFLQFCSNTVMNKIEYNMTSLLNELQIFQSLMNNEGQKEGEANVAHS-RRFQKDSSSGTKSAPSFSGTKKIQKKK
A0A5A7VA67 Gag/pol protein1.3e-6076.05Show/hide
Query:  MEECPPSPSQNASQTVRDAYDRWTKANDKARVYILASMSDVLIKKHETMVTARQIMDSLQEMFGQPSTQIWQEAIKHVYNARLNEGQSIREHVLDLIVHF
        MEECPP P+QNASQ+V+DAYD WTKANDKA +Y+LAS+SD+L KKHE MVTARQIMDSL+EMFGQPS QI QEAIK+VYNAR+ EGQS+REHVL +IV+F
Subjt:  MEECPPSPSQNASQTVRDAYDRWTKANDKARVYILASMSDVLIKKHETMVTARQIMDSLQEMFGQPSTQIWQEAIKHVYNARLNEGQSIREHVLDLIVHF

Query:  -----NEAVFDEKSQVSFILKSLLKSFLQFCSNTVMNKIEYNMTSLLNELQIFQSLMNNEGQKEGEA
             N+A+FDEKSQVS+ILKSL KSFLQFCSN  MNKIEYNMT+LL ELQ FQSL   +GQKEGEA
Subjt:  -----NEAVFDEKSQVSFILKSLLKSFLQFCSNTVMNKIEYNMTSLLNELQIFQSLMNNEGQKEGEA
A0A5D3D0D9 Gag/pol protein1.3e-6076.05Show/hide
Query:  MEECPPSPSQNASQTVRDAYDRWTKANDKARVYILASMSDVLIKKHETMVTARQIMDSLQEMFGQPSTQIWQEAIKHVYNARLNEGQSIREHVLDLIVHF
        MEECPP P+QNASQ+V+DAYD WTKANDKA +Y+LAS+SD+L KKHE MVTARQIMDSL+EMFGQPS QI QEAIK+VYNAR+ EGQS+REHVL +IV+F
Subjt:  MEECPPSPSQNASQTVRDAYDRWTKANDKARVYILASMSDVLIKKHETMVTARQIMDSLQEMFGQPSTQIWQEAIKHVYNARLNEGQSIREHVLDLIVHF

Query:  -----NEAVFDEKSQVSFILKSLLKSFLQFCSNTVMNKIEYNMTSLLNELQIFQSLMNNEGQKEGEA
             N+A+FDEKSQVS+ILKSL KSFLQFCSN  MNKIEYNMT+LL ELQ FQSL   +GQKEGEA
Subjt:  -----NEAVFDEKSQVSFILKSLLKSFLQFCSNTVMNKIEYNMTSLLNELQIFQSLMNNEGQKEGEA
A0A5D3DDU7 Gag/pol protein5.0e-6073.99Show/hide
Query:  MEECPPSPSQNASQTVRDAYDRWTKANDKARVYILASMSDVLIKKHETMVTARQIMDSLQEMFGQPSTQIWQEAIKHVYNARLNEGQSIREHVLDLIVHF
        M+ECPP P+QNASQ+V+D YDRWTKANDKARVYILASMSD+L KKHE MVTA QIMDSL+EMFGQ S QI Q+AIK+VYNA + EGQS+R+HV+D+IVHF
Subjt:  MEECPPSPSQNASQTVRDAYDRWTKANDKARVYILASMSDVLIKKHETMVTARQIMDSLQEMFGQPSTQIWQEAIKHVYNARLNEGQSIREHVLDLIVHF

Query:  NEA-----VFDEKSQVSFILKSLLKSFLQFCSNTVMNKIEYNMTSLLNELQIFQSLMNNEGQKEGEANVAHSR
        N A     VFDEKSQ+SFILKSL KSFLQF SN  MNKI YNMT+ L EL  FQSL   +GQKEGEANV HSR
Subjt:  NEA-----VFDEKSQVSFILKSLLKSFLQFCSNTVMNKIEYNMTSLLNELQIFQSLMNNEGQKEGEANVAHSR
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGAATGTCCTCCTTCCCCTTCTCAAAATGCATCCCAGACTGTCAGGGATGCATATGACCGTTGGACAAAGGCCAATGATAAGGCTCGCGTCTACATCTTGGCCAG
TATGTCTGACGTACTGATCAAGAAACATGAGACCATGGTCACTGCACGTCAGATCATGGACTCTCTTCAAGAGATGTTTGGACAACCGTCCACTCAGATCTGGCAAGAGG
CAATTAAACACGTTTATAATGCCCGTTTGAATGAGGGTCAATCTATTAGAGAACATGTTCTTGACTTGATAGTCCATTTCAACGAAGCGGTCTTTGATGAGAAGAGTCAA
GTGTCCTTTATCTTGAAATCTCTTCTAAAGAGCTTTCTTCAATTCTGTAGCAATACGGTTATGAACAAGATAGAGTACAATATGACTTCCCTCCTTAATGAGTTGCAGAT
TTTTCAGTCTCTTATGAATAATGAGGGACAGAAAGAAGGAGAGGCAAATGTTGCCCATTCCAGGAGGTTTCAGAAGGATTCATCCTCTGGAACCAAGTCTGCACCTTCAT
TTTCTGGCACTAAGAAAATCCAGAAGAAGAAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGGAATGTCCTCCTTCCCCTTCTCAAAATGCATCCCAGACTGTCAGGGATGCATATGACCGTTGGACAAAGGCCAATGATAAGGCTCGCGTCTACATCTTGGCCAG
TATGTCTGACGTACTGATCAAGAAACATGAGACCATGGTCACTGCACGTCAGATCATGGACTCTCTTCAAGAGATGTTTGGACAACCGTCCACTCAGATCTGGCAAGAGG
CAATTAAACACGTTTATAATGCCCGTTTGAATGAGGGTCAATCTATTAGAGAACATGTTCTTGACTTGATAGTCCATTTCAACGAAGCGGTCTTTGATGAGAAGAGTCAA
GTGTCCTTTATCTTGAAATCTCTTCTAAAGAGCTTTCTTCAATTCTGTAGCAATACGGTTATGAACAAGATAGAGTACAATATGACTTCCCTCCTTAATGAGTTGCAGAT
TTTTCAGTCTCTTATGAATAATGAGGGACAGAAAGAAGGAGAGGCAAATGTTGCCCATTCCAGGAGGTTTCAGAAGGATTCATCCTCTGGAACCAAGTCTGCACCTTCAT
TTTCTGGCACTAAGAAAATCCAGAAGAAGAAATGA
Protein sequenceShow/hide protein sequence
MEECPPSPSQNASQTVRDAYDRWTKANDKARVYILASMSDVLIKKHETMVTARQIMDSLQEMFGQPSTQIWQEAIKHVYNARLNEGQSIREHVLDLIVHFNEAVFDEKSQ
VSFILKSLLKSFLQFCSNTVMNKIEYNMTSLLNELQIFQSLMNNEGQKEGEANVAHSRRFQKDSSSGTKSAPSFSGTKKIQKKK