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PI0005396 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0005396
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr11:25896548..25897237
RNA-Seq ExpressionPI0005396
SyntenyPI0005396
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036791.1 retrotransposon protein [Cucumis melo var. makuwa]5.6e-4157.3Show/hide
Query:  MTSSSRTSEHIWTKKEESNLVKCLVELVSP---MFRSQIMVRPGYLAQLQRMMAKKMPGCNIQVGLDGTMNSSASSLRRNLFDNWVKSHLAAKGLLNKSF
        MTSSSR  +H WTK+EE+ LV+CLVELV+     F ++   RPGYL QL RMMA K+P     V L G M     +  + +FDNWVKSH AAKGLLNK F
Subjt:  MTSSSRTSEHIWTKKEESNLVKCLVELVSP---MFRSQIMVRPGYLAQLQRMMAKKMPGCNIQVGLDGTMNSSASSLRRNLFDNWVKSHLAAKGLLNKSF

Query:  PYYDDMSYVFGKDRAIGTRVETFVDVGSNVPRGYGRFSADDANDPPIPMMYSKGLDMSPYDIMDTRPNRSSEGRNASS
         +YD++SYVFGKDR+ G RVE+F D+GSN P GY  F+AD A D   P MYS+GL+MSP D+M TR  R SE RN SS
Subjt:  PYYDDMSYVFGKDRAIGTRVETFVDVGSNVPRGYGRFSADDANDPPIPMMYSKGLDMSPYDIMDTRPNRSSEGRNASS

KAA0046234.1 retrotransposon protein [Cucumis melo var. makuwa]8.1e-4054.49Show/hide
Query:  MTSSSRTSEHIWTKKEESNLVKCLVELVS--PMFRSQIMVRPGYLAQLQRMMAKKMPGCNIQVGLDGTMNSSASSLRRNLFDNWVKSHLAAKGLLNKSFP
        M++S+R   H+WT KEE  LV+CL+ELVS           RPGYLAQL RMMA+K+PGC   V L GTM S  +   + LFDNWV+SH AAK LLNK FP
Subjt:  MTSSSRTSEHIWTKKEESNLVKCLVELVS--PMFRSQIMVRPGYLAQLQRMMAKKMPGCNIQVGLDGTMNSSASSLRRNLFDNWVKSHLAAKGLLNKSFP

Query:  YYDDMSYVFGKDRAIGTRVETFVDVGSNVPR-GYGRFSADDANDPPIPMMYSKGLDMSPYDIMDTRPNRSSEGRNASS
        YYD+++YVFG DRA G   ETF DVGSN    GY RF   D N+   P +YS+G+D+S  D+  +RP+R+SEGR  SS
Subjt:  YYDDMSYVFGKDRAIGTRVETFVDVGSNVPR-GYGRFSADDANDPPIPMMYSKGLDMSPYDIMDTRPNRSSEGRNASS

KAA0047075.1 retrotransposon protein [Cucumis melo var. makuwa]8.1e-4051.23Show/hide
Query:  MTSSSRTSEHIWTKKEESNLVKCLVELVSP-MFRSQI-MVRPGYLAQLQRMMAKKMPGCNI-------QVGLDGTMNSSASSLR----------------
        M SSSR  +H WTK+EE++LV+CLVELV+   +RS     RPGYL QL RMMA K+PGCNI       ++ L   M  + + +R                
Subjt:  MTSSSRTSEHIWTKKEESNLVKCLVELVSP-MFRSQI-MVRPGYLAQLQRMMAKKMPGCNI-------QVGLDGTMNSSASSLR----------------

Query:  ---RNLFDNWVKSHLAAKGLLNKSFPYYDDMSYVFGKDRAIGTRVETFVDVGSNVPRGYGRFSADDANDPPIPMMYSKGLDMSPYDIMDTRPNRSSEGRN
           + LFD+WVKSH  AKGLLNKSF +YD++SYVFGKDRA G R E+F D+GSN P GY  F+AD A D     MYS GL+MSP D+M+TR  R SE RN
Subjt:  ---RNLFDNWVKSHLAAKGLLNKSFPYYDDMSYVFGKDRAIGTRVETFVDVGSNVPRGYGRFSADDANDPPIPMMYSKGLDMSPYDIMDTRPNRSSEGRN

Query:  ASS
         SS
Subjt:  ASS

KAA0048280.1 retrotransposon protein [Cucumis melo var. makuwa]2.5e-4157.06Show/hide
Query:  MTSSSRTSEHIWTKKEESNLVKCLVELVSP-MFRSQI-MVRPGYLAQLQRMMAKKMPGCNIQVGLDGTMNSSASSLRRNLFDNWVKSHLAAKGLLNKSFP
        MTSSSR  +H WTK+EE+ LV+CLVELV+   +RS      PGYL QL RMMA K+P     V L G M        + +FD+WVKSH AAKGLLNKSF 
Subjt:  MTSSSRTSEHIWTKKEESNLVKCLVELVSP-MFRSQI-MVRPGYLAQLQRMMAKKMPGCNIQVGLDGTMNSSASSLRRNLFDNWVKSHLAAKGLLNKSFP

Query:  YYDDMSYVFGKDRAIGTRVETFVDVGSNVPRGYGRFSADDANDPPIPMMYSKGLDMSPYDIMDTRPNRSSEGRNASS
        +YD++SYVFGKDRA G R E+F D+GSN P GY  F+ADD +D     MYS GL+MSP D+M+TR  R SE RN SS
Subjt:  YYDDMSYVFGKDRAIGTRVETFVDVGSNVPRGYGRFSADDANDPPIPMMYSKGLDMSPYDIMDTRPNRSSEGRNASS

KAA0054147.1 retrotransposon protein [Cucumis melo var. makuwa]6.7e-4258.19Show/hide
Query:  MTSSSRTSEHIWTKKEESNLVKCLVELVS-PMFRSQI-MVRPGYLAQLQRMMAKKMPGCNIQVGLDGTMNSSASSLRRNLFDNWVKSHLAAKGLLNKSFP
        MTSSSR  +H WTK+EE+ LV+CLVELV+   +RS     RPGYL QL RMMA K+P     V L G M        + +FD+WVKSH AAKGLLNKSF 
Subjt:  MTSSSRTSEHIWTKKEESNLVKCLVELVS-PMFRSQI-MVRPGYLAQLQRMMAKKMPGCNIQVGLDGTMNSSASSLRRNLFDNWVKSHLAAKGLLNKSFP

Query:  YYDDMSYVFGKDRAIGTRVETFVDVGSNVPRGYGRFSADDANDPPIPMMYSKGLDMSPYDIMDTRPNRSSEGRNASS
        +YD++SYVFGKDRA G R E+FVD+GSN P GY  F+AD   D   P MYS GL+MSP D+M+TR  R SE RN SS
Subjt:  YYDDMSYVFGKDRAIGTRVETFVDVGSNVPRGYGRFSADDANDPPIPMMYSKGLDMSPYDIMDTRPNRSSEGRNASS

TrEMBL top hitse value%identityAlignment
A0A5A7TT52 Retrotransposon protein3.9e-4054.49Show/hide
Query:  MTSSSRTSEHIWTKKEESNLVKCLVELVS--PMFRSQIMVRPGYLAQLQRMMAKKMPGCNIQVGLDGTMNSSASSLRRNLFDNWVKSHLAAKGLLNKSFP
        M++S+R   H+WT KEE  LV+CL+ELVS           RPGYLAQL RMMA+K+PGC   V L GTM S  +   + LFDNWV+SH AAK LLNK FP
Subjt:  MTSSSRTSEHIWTKKEESNLVKCLVELVS--PMFRSQIMVRPGYLAQLQRMMAKKMPGCNIQVGLDGTMNSSASSLRRNLFDNWVKSHLAAKGLLNKSFP

Query:  YYDDMSYVFGKDRAIGTRVETFVDVGSNVPR-GYGRFSADDANDPPIPMMYSKGLDMSPYDIMDTRPNRSSEGRNASS
        YYD+++YVFG DRA G   ETF DVGSN    GY RF   D N+   P +YS+G+D+S  D+  +RP+R+SEGR  SS
Subjt:  YYDDMSYVFGKDRAIGTRVETFVDVGSNVPR-GYGRFSADDANDPPIPMMYSKGLDMSPYDIMDTRPNRSSEGRNASS

A0A5A7TYQ6 Retrotransposon protein1.2e-4157.06Show/hide
Query:  MTSSSRTSEHIWTKKEESNLVKCLVELVSP-MFRSQI-MVRPGYLAQLQRMMAKKMPGCNIQVGLDGTMNSSASSLRRNLFDNWVKSHLAAKGLLNKSFP
        MTSSSR  +H WTK+EE+ LV+CLVELV+   +RS      PGYL QL RMMA K+P     V L G M        + +FD+WVKSH AAKGLLNKSF 
Subjt:  MTSSSRTSEHIWTKKEESNLVKCLVELVSP-MFRSQI-MVRPGYLAQLQRMMAKKMPGCNIQVGLDGTMNSSASSLRRNLFDNWVKSHLAAKGLLNKSFP

Query:  YYDDMSYVFGKDRAIGTRVETFVDVGSNVPRGYGRFSADDANDPPIPMMYSKGLDMSPYDIMDTRPNRSSEGRNASS
        +YD++SYVFGKDRA G R E+F D+GSN P GY  F+ADD +D     MYS GL+MSP D+M+TR  R SE RN SS
Subjt:  YYDDMSYVFGKDRAIGTRVETFVDVGSNVPRGYGRFSADDANDPPIPMMYSKGLDMSPYDIMDTRPNRSSEGRNASS

A0A5A7U098 Retrotransposon protein3.9e-4051.23Show/hide
Query:  MTSSSRTSEHIWTKKEESNLVKCLVELVSP-MFRSQI-MVRPGYLAQLQRMMAKKMPGCNI-------QVGLDGTMNSSASSLR----------------
        M SSSR  +H WTK+EE++LV+CLVELV+   +RS     RPGYL QL RMMA K+PGCNI       ++ L   M  + + +R                
Subjt:  MTSSSRTSEHIWTKKEESNLVKCLVELVSP-MFRSQI-MVRPGYLAQLQRMMAKKMPGCNI-------QVGLDGTMNSSASSLR----------------

Query:  ---RNLFDNWVKSHLAAKGLLNKSFPYYDDMSYVFGKDRAIGTRVETFVDVGSNVPRGYGRFSADDANDPPIPMMYSKGLDMSPYDIMDTRPNRSSEGRN
           + LFD+WVKSH  AKGLLNKSF +YD++SYVFGKDRA G R E+F D+GSN P GY  F+AD A D     MYS GL+MSP D+M+TR  R SE RN
Subjt:  ---RNLFDNWVKSHLAAKGLLNKSFPYYDDMSYVFGKDRAIGTRVETFVDVGSNVPRGYGRFSADDANDPPIPMMYSKGLDMSPYDIMDTRPNRSSEGRN

Query:  ASS
         SS
Subjt:  ASS

A0A5A7UHV9 Retrotransposon protein3.2e-4258.19Show/hide
Query:  MTSSSRTSEHIWTKKEESNLVKCLVELVS-PMFRSQI-MVRPGYLAQLQRMMAKKMPGCNIQVGLDGTMNSSASSLRRNLFDNWVKSHLAAKGLLNKSFP
        MTSSSR  +H WTK+EE+ LV+CLVELV+   +RS     RPGYL QL RMMA K+P     V L G M        + +FD+WVKSH AAKGLLNKSF 
Subjt:  MTSSSRTSEHIWTKKEESNLVKCLVELVS-PMFRSQI-MVRPGYLAQLQRMMAKKMPGCNIQVGLDGTMNSSASSLRRNLFDNWVKSHLAAKGLLNKSFP

Query:  YYDDMSYVFGKDRAIGTRVETFVDVGSNVPRGYGRFSADDANDPPIPMMYSKGLDMSPYDIMDTRPNRSSEGRNASS
        +YD++SYVFGKDRA G R E+FVD+GSN P GY  F+AD   D   P MYS GL+MSP D+M+TR  R SE RN SS
Subjt:  YYDDMSYVFGKDRAIGTRVETFVDVGSNVPRGYGRFSADDANDPPIPMMYSKGLDMSPYDIMDTRPNRSSEGRNASS

A0A5D3BC43 Retrotransposon protein2.7e-4157.3Show/hide
Query:  MTSSSRTSEHIWTKKEESNLVKCLVELVSP---MFRSQIMVRPGYLAQLQRMMAKKMPGCNIQVGLDGTMNSSASSLRRNLFDNWVKSHLAAKGLLNKSF
        MTSSSR  +H WTK+EE+ LV+CLVELV+     F ++   RPGYL QL RMMA K+P     V L G M     +  + +FDNWVKSH AAKGLLNK F
Subjt:  MTSSSRTSEHIWTKKEESNLVKCLVELVSP---MFRSQIMVRPGYLAQLQRMMAKKMPGCNIQVGLDGTMNSSASSLRRNLFDNWVKSHLAAKGLLNKSF

Query:  PYYDDMSYVFGKDRAIGTRVETFVDVGSNVPRGYGRFSADDANDPPIPMMYSKGLDMSPYDIMDTRPNRSSEGRNASS
         +YD++SYVFGKDR+ G RVE+F D+GSN P GY  F+AD A D   P MYS+GL+MSP D+M TR  R SE RN SS
Subjt:  PYYDDMSYVFGKDRAIGTRVETFVDVGSNVPRGYGRFSADDANDPPIPMMYSKGLDMSPYDIMDTRPNRSSEGRNASS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACAAGTTCCTCCCGGACCTCTGAACACATCTGGACAAAAAAGGAAGAGTCCAACCTGGTCAAGTGCTTGGTGGAGTTGGTTTCTCCGATGTTTAGAAGTCAGATAAT
GGTACGTCCTGGATACCTGGCACAACTACAAAGAATGATGGCAAAGAAGATGCCAGGATGTAACATCCAGGTGGGTTTGGATGGAACAATGAATTCAAGTGCATCATCGT
TAAGAAGGAATTTGTTCGATAATTGGGTGAAGAGTCATCTTGCTGCCAAGGGCCTCCTCAACAAATCATTCCCCTATTACGACGACATGTCCTACGTATTTGGGAAAGAT
CGTGCTATCGGAACACGCGTAGAGACATTCGTCGATGTGGGGTCGAATGTGCCAAGAGGGTACGGGAGATTTTCCGCTGATGATGCTAACGATCCACCGATCCCTATGAT
GTATAGTAAGGGACTAGACATGTCGCCTTATGACATCATGGACACACGACCTAATCGATCAAGTGAGGGTAGGAATGCTTCTAGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGACAAGTTCCTCCCGGACCTCTGAACACATCTGGACAAAAAAGGAAGAGTCCAACCTGGTCAAGTGCTTGGTGGAGTTGGTTTCTCCGATGTTTAGAAGTCAGATAAT
GGTACGTCCTGGATACCTGGCACAACTACAAAGAATGATGGCAAAGAAGATGCCAGGATGTAACATCCAGGTGGGTTTGGATGGAACAATGAATTCAAGTGCATCATCGT
TAAGAAGGAATTTGTTCGATAATTGGGTGAAGAGTCATCTTGCTGCCAAGGGCCTCCTCAACAAATCATTCCCCTATTACGACGACATGTCCTACGTATTTGGGAAAGAT
CGTGCTATCGGAACACGCGTAGAGACATTCGTCGATGTGGGGTCGAATGTGCCAAGAGGGTACGGGAGATTTTCCGCTGATGATGCTAACGATCCACCGATCCCTATGAT
GTATAGTAAGGGACTAGACATGTCGCCTTATGACATCATGGACACACGACCTAATCGATCAAGTGAGGGTAGGAATGCTTCTAGCTGA
Protein sequenceShow/hide protein sequence
MTSSSRTSEHIWTKKEESNLVKCLVELVSPMFRSQIMVRPGYLAQLQRMMAKKMPGCNIQVGLDGTMNSSASSLRRNLFDNWVKSHLAAKGLLNKSFPYYDDMSYVFGKD
RAIGTRVETFVDVGSNVPRGYGRFSADDANDPPIPMMYSKGLDMSPYDIMDTRPNRSSEGRNASS