CuGenDBv2

Gene ID	PI0005398
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Reverse transcriptase
Genome location	chr07:13110586..13110837
RNA-Seq Expression	PI0005398
Synteny	PI0005398
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domains	IPR000953 - Chromo/chromo shadow domain IPR016197 - Chromo-like domain superfamily IPR023780 - Chromo domain

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0037220.1 reverse transcriptase [Cucumis melo var. makuwa]

1.3e-27

73.49

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Query:  MQRNVIARPSMDRNKKKDKDVKEIFVDRVRKGRRPTRRIHKFLIKWKNLPVEETSWERVEDLEAWKQKIEKFQLRQSTGTSTV
        +QRNV+ RP++D ++K+DKDV+EI  +RVR+GRRP RRIH++L+KWKNLPVEETSWERVEDLEAWKQKIE F+LRQ TGTST+
Subjt:  MQRNVIARPSMDRNKKKDKDVKEIFVDRVRKGRRPTRRIHKFLIKWKNLPVEETSWERVEDLEAWKQKIEKFQLRQSTGTSTV

KAA0057858.1 reverse transcriptase [Cucumis melo var. makuwa]

9.9e-28

73.49

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Query:  MQRNVIARPSMDRNKKKDKDVKEIFVDRVRKGRRPTRRIHKFLIKWKNLPVEETSWERVEDLEAWKQKIEKFQLRQSTGTSTV
        +QRN++ RP +D ++K+DKDV+EI  +RVR+GRRPTRRIH++L+KWKNLPVEETSWERVEDLEAWKQKIE F+LRQ TGTST+
Subjt:  MQRNVIARPSMDRNKKKDKDVKEIFVDRVRKGRRPTRRIHKFLIKWKNLPVEETSWERVEDLEAWKQKIEKFQLRQSTGTSTV

KAA0067557.1 reverse transcriptase [Cucumis melo var. makuwa]

1.3e-27

73.49

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Query:  MQRNVIARPSMDRNKKKDKDVKEIFVDRVRKGRRPTRRIHKFLIKWKNLPVEETSWERVEDLEAWKQKIEKFQLRQSTGTSTV
        +QRNV+ RP++D ++K+DKDV+EI  +RVR+GRRP RRIH++L+KWKNLPVEETSWERVEDLEAWKQKIE F+LRQ TGTST+
Subjt:  MQRNVIARPSMDRNKKKDKDVKEIFVDRVRKGRRPTRRIHKFLIKWKNLPVEETSWERVEDLEAWKQKIEKFQLRQSTGTSTV

TYJ98540.1 reverse transcriptase [Cucumis melo var. makuwa]

9.9e-28

73.49

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Query:  MQRNVIARPSMDRNKKKDKDVKEIFVDRVRKGRRPTRRIHKFLIKWKNLPVEETSWERVEDLEAWKQKIEKFQLRQSTGTSTV
        +QRN++ RP +D ++K+DKDV+EI  +RVR+GRRPTRRIH++L+KWKNLPVEETSWERVEDLEAWKQKIE F+LRQ TGTST+
Subjt:  MQRNVIARPSMDRNKKKDKDVKEIFVDRVRKGRRPTRRIHKFLIKWKNLPVEETSWERVEDLEAWKQKIEKFQLRQSTGTSTV

TYK19637.1 reverse transcriptase [Cucumis melo var. makuwa]

1.3e-27

73.49

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Query:  MQRNVIARPSMDRNKKKDKDVKEIFVDRVRKGRRPTRRIHKFLIKWKNLPVEETSWERVEDLEAWKQKIEKFQLRQSTGTSTV
        +QRNV+ RP++D ++K+DKDV+EI  +RVR+GRRP RRIH++L+KWKNLPVEETSWERVEDLEAWKQKIE F+LRQ TGTST+
Subjt:  MQRNVIARPSMDRNKKKDKDVKEIFVDRVRKGRRPTRRIHKFLIKWKNLPVEETSWERVEDLEAWKQKIEKFQLRQSTGTSTV

TrEMBL top hits

e value

%identity

Alignment

A0A5A7URR9 Reverse transcriptase

4.8e-28

73.49

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Query:  MQRNVIARPSMDRNKKKDKDVKEIFVDRVRKGRRPTRRIHKFLIKWKNLPVEETSWERVEDLEAWKQKIEKFQLRQSTGTSTV
        +QRN++ RP +D ++K+DKDV+EI  +RVR+GRRPTRRIH++L+KWKNLPVEETSWERVEDLEAWKQKIE F+LRQ TGTST+
Subjt:  MQRNVIARPSMDRNKKKDKDVKEIFVDRVRKGRRPTRRIHKFLIKWKNLPVEETSWERVEDLEAWKQKIEKFQLRQSTGTSTV

A0A5A7UXR6 Reverse transcriptase

6.2e-28

73.49

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Query:  MQRNVIARPSMDRNKKKDKDVKEIFVDRVRKGRRPTRRIHKFLIKWKNLPVEETSWERVEDLEAWKQKIEKFQLRQSTGTSTV
        +QRNV+ RP++D ++K+DKDV+EI  +RVR+GRRP RRIH++L+KWKNLPVEETSWERVEDLEAWKQKIE F+LRQ TGTST+
Subjt:  MQRNVIARPSMDRNKKKDKDVKEIFVDRVRKGRRPTRRIHKFLIKWKNLPVEETSWERVEDLEAWKQKIEKFQLRQSTGTSTV

A0A5D3BFH0 Reverse transcriptase

4.8e-28

73.49

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Query:  MQRNVIARPSMDRNKKKDKDVKEIFVDRVRKGRRPTRRIHKFLIKWKNLPVEETSWERVEDLEAWKQKIEKFQLRQSTGTSTV
        +QRN++ RP +D ++K+DKDV+EI  +RVR+GRRPTRRIH++L+KWKNLPVEETSWERVEDLEAWKQKIE F+LRQ TGTST+
Subjt:  MQRNVIARPSMDRNKKKDKDVKEIFVDRVRKGRRPTRRIHKFLIKWKNLPVEETSWERVEDLEAWKQKIEKFQLRQSTGTSTV

A0A5D3C4R1 Reverse transcriptase

6.2e-28

73.49

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Query:  MQRNVIARPSMDRNKKKDKDVKEIFVDRVRKGRRPTRRIHKFLIKWKNLPVEETSWERVEDLEAWKQKIEKFQLRQSTGTSTV
        +QRNV+ RP++D ++K+DKDV+EI  +RVR+GRRP RRIH++L+KWKNLPVEETSWERVEDLEAWKQKIE F+LRQ TGTST+
Subjt:  MQRNVIARPSMDRNKKKDKDVKEIFVDRVRKGRRPTRRIHKFLIKWKNLPVEETSWERVEDLEAWKQKIEKFQLRQSTGTSTV

A0A5D3DBE0 Reverse transcriptase

6.2e-28

73.49

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Query:  MQRNVIARPSMDRNKKKDKDVKEIFVDRVRKGRRPTRRIHKFLIKWKNLPVEETSWERVEDLEAWKQKIEKFQLRQSTGTSTV
        +QRNV+ RP++D ++K+DKDV+EI  +RVR+GRRP RRIH++L+KWKNLPVEETSWERVEDLEAWKQKIE F+LRQ TGTST+
Subjt:  MQRNVIARPSMDRNKKKDKDVKEIFVDRVRKGRRPTRRIHKFLIKWKNLPVEETSWERVEDLEAWKQKIEKFQLRQSTGTSTV

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGCAGCGCAACGTTATCGCTCGACCGAGCATGGACCGGAACAAGAAAAAAGACAAAGATGTTAAAGAAATCTTTGTCGATCGAGTAAGGAAAGGTAGAAGGCCCACGAG
GAGAATCCACAAATTCCTAATCAAGTGGAAGAACCTCCCCGTGGAAGAAACCAGTTGGGAACGTGTCGAAGACCTAGAAGCGTGGAAGCAGAAGATCGAAAAATTCCAGC
TTCGCCAGTCGACAGGGACGTCAACTGTTTAA

mRNA sequence

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Protein sequence

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MQRNVIARPSMDRNKKKDKDVKEIFVDRVRKGRRPTRRIHKFLIKWKNLPVEETSWERVEDLEAWKQKIEKFQLRQSTGTSTV

PI0005398 (gene) of Melon (PI 482460) v1 genome