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PI0005454 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0005454
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr09:16584286..16585116
RNA-Seq ExpressionPI0005454
SyntenyPI0005454
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0045094.1 putative mitochondrial protein [Cucumis melo var. makuwa]2.2e-8071Show/hide
Query:  MEKGDIARPISTVLDGSNYITWAHQMRSFFIGRKLWRIVTGDITKPIKPTSLGKNIRLDITENVDPASSKVTVHEPTTEDAKYIERLEDW----------
        MEKGDIARPIST+LDGSNYITWA+QMRSF IGRKLWRIVTGDITKPIKPT   KN   + TE+ D  +S     E T ED KYIERLEDW          
Subjt:  MEKGDIARPISTVLDGSNYITWAHQMRSFFIGRKLWRIVTGDITKPIKPTSLGKNIRLDITENVDPASSKVTVHEPTTEDAKYIERLEDW----------

Query:  ------------SIGLAHYYQLHSRRVSLIQESGKSVNEYLTTLQPIWTQLDQAKINPDHIHLIKVLMGLRPEYESVRVALLHRNPLPSLDATVQEILFE
                    SIGLAHYYQLHS  V+L QE G+SVN+YL TLQPIWTQLDQAKI+PDHI LIKVLMGLRPEYESVR ALLHRN LPSLDA VQEILFE
Subjt:  ------------SIGLAHYYQLHSRRVSLIQESGKSVNEYLTTLQPIWTQLDQAKINPDHIHLIKVLMGLRPEYESVRVALLHRNPLPSLDATVQEILFE

Query:  EKRLGIVSSLPSDVALATTYLRSTNESTFCK
        +KRLG+VSSLP DVALATT+LR  NE++FCK
Subjt:  EKRLGIVSSLPSDVALATTYLRSTNESTFCK

KAA0047794.1 putative mitochondrial protein [Cucumis melo var. makuwa]8.8e-8265.6Show/hide
Query:  MEKGDIARPISTVLDGSNYITWAHQMRSFFIGRKLWRIVTGDITKPIKPTSLGKNIRLDITENVDPASSKVTVHEPTTEDAKYIERLEDW----------
        MEK  +ARPIST+LDG+NYITWAHQMRSF IGRKLWRIVTGDITKP+KPT   KN   + TE+ D  +S + VHEPT ED +YIERLEDW          
Subjt:  MEKGDIARPISTVLDGSNYITWAHQMRSFFIGRKLWRIVTGDITKPIKPTSLGKNIRLDITENVDPASSKVTVHEPTTEDAKYIERLEDW----------

Query:  -------------------------------SIGLAHYYQLHSRRVSLIQESGKSVNEYLTTLQPIWTQLDQAKINPDHIHLIKVLMGLRPEYESVRVAL
                                       SIGLAHYYQLHS  V+L QE G+SVNEYL T QPIWTQLDQAKI+PDHI LIKVLMGLR EYESVR AL
Subjt:  -------------------------------SIGLAHYYQLHSRRVSLIQESGKSVNEYLTTLQPIWTQLDQAKINPDHIHLIKVLMGLRPEYESVRVAL

Query:  LHRNPLPSLDATVQEILFEEKRLGIVSSLPSDVALATTYLRSTNESTFCK
        LHRNPLPSLDA VQEILFEEKRLGIVSSLPSDVALATT++R  NE++FCK
Subjt:  LHRNPLPSLDATVQEILFEEKRLGIVSSLPSDVALATTYLRSTNESTFCK

KAA0065380.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]3.1e-7972.02Show/hide
Query:  MEKGDIARPISTVLDGSNYITWAHQMRSFFIGRKLWRIVTGDITKPIKPTSLGKNIRLDITENVDPASSKVTVHEPTTEDAKYIERLEDWS---------
        MEK D+ARPIST+LDG+NYITWAHQMRSF IGRKLWRIVTGDITKP+KP                       VHE + ED +YIERLEDW          
Subjt:  MEKGDIARPISTVLDGSNYITWAHQMRSFFIGRKLWRIVTGDITKPIKPTSLGKNIRLDITENVDPASSKVTVHEPTTEDAKYIERLEDWS---------

Query:  IGLAHYYQLHSRRVSLIQESGKSVNEYLTTLQPIWTQLDQAKINPDHIHLIKVLMGLRPEYESVRVALLHRNPLPSLDATVQEILFEEKRLGIVSSLPSD
        +GLAHYYQLHS  VSL QE G+SVNEYL TLQPIWTQLDQAKI+PDHI LIKVLMGLRPEYESVR ALLHRNPLPSLDA VQEILFEEKRLGIVSSL SD
Subjt:  IGLAHYYQLHSRRVSLIQESGKSVNEYLTTLQPIWTQLDQAKINPDHIHLIKVLMGLRPEYESVRVALLHRNPLPSLDATVQEILFEEKRLGIVSSLPSD

Query:  VALATTYLRSTNESTFCK
        VALATT+LR  NE+ FCK
Subjt:  VALATTYLRSTNESTFCK

XP_008450155.1 PREDICTED: uncharacterized protein LOC103491828 [Cucumis melo]2.2e-8071Show/hide
Query:  MEKGDIARPISTVLDGSNYITWAHQMRSFFIGRKLWRIVTGDITKPIKPTSLGKNIRLDITENVDPASSKVTVHEPTTEDAKYIERLEDW----------
        MEKGDIARPIST+LDGSNYITWA+QMRSF IGRKLWRIVTGDITKPIKPT   KN   + TE+ D  +S     E T ED KYIERLEDW          
Subjt:  MEKGDIARPISTVLDGSNYITWAHQMRSFFIGRKLWRIVTGDITKPIKPTSLGKNIRLDITENVDPASSKVTVHEPTTEDAKYIERLEDW----------

Query:  ------------SIGLAHYYQLHSRRVSLIQESGKSVNEYLTTLQPIWTQLDQAKINPDHIHLIKVLMGLRPEYESVRVALLHRNPLPSLDATVQEILFE
                    SIGLAHYYQLHS  V+L QE G+SVN+YL TLQPIWTQLDQAKI+PDHI LIKVLMGLRPEYESVR ALLHRN LPSLDA VQEILFE
Subjt:  ------------SIGLAHYYQLHSRRVSLIQESGKSVNEYLTTLQPIWTQLDQAKINPDHIHLIKVLMGLRPEYESVRVALLHRNPLPSLDATVQEILFE

Query:  EKRLGIVSSLPSDVALATTYLRSTNESTFCK
        +KRLG+VSSLP DVALATT+LR  NE++FCK
Subjt:  EKRLGIVSSLPSDVALATTYLRSTNESTFCK

XP_031739694.1 uncharacterized protein LOC105434738 [Cucumis sativus]1.6e-8367.6Show/hide
Query:  MEKGDIARPISTVLDGSNYITWAHQMRSFFIGRKLWRIVTGDITKPIKPTSLGKNIRLDITENVDPASSKVTVHEPTTEDAKYIERLEDW----------
        MEK ++ARPIST+LDG+NYITWAHQMRSF IGRKLWRIVTGDITKP+KPT L     +D TEN+D   S VTV E T E  KYIERLEDW          
Subjt:  MEKGDIARPISTVLDGSNYITWAHQMRSFFIGRKLWRIVTGDITKPIKPTSLGKNIRLDITENVDPASSKVTVHEPTTEDAKYIERLEDW----------

Query:  -------------------------------SIGLAHYYQLHSRRVSLIQESGKSVNEYLTTLQPIWTQLDQAKINPDHIHLIKVLMGLRPEYESVRVAL
                                       SIGLAHYYQLHSR VSL QE G+SVNEYL TLQPIWTQLDQAKINP+HI LIKVLMGLRPEYESVR AL
Subjt:  -------------------------------SIGLAHYYQLHSRRVSLIQESGKSVNEYLTTLQPIWTQLDQAKINPDHIHLIKVLMGLRPEYESVRVAL

Query:  LHRNPLPSLDATVQEILFEEKRLGIVSSLPSDVALATTYLRSTNESTFCK
        LHRNPLPSLDA +QEILFEE RLGIVSSLPSDVALATT+ RS NES FCK
Subjt:  LHRNPLPSLDATVQEILFEEKRLGIVSSLPSDVALATTYLRSTNESTFCK

TrEMBL top hitse value%identityAlignment
A0A1S3BPL0 uncharacterized protein LOC1034918281.1e-8071Show/hide
Query:  MEKGDIARPISTVLDGSNYITWAHQMRSFFIGRKLWRIVTGDITKPIKPTSLGKNIRLDITENVDPASSKVTVHEPTTEDAKYIERLEDW----------
        MEKGDIARPIST+LDGSNYITWA+QMRSF IGRKLWRIVTGDITKPIKPT   KN   + TE+ D  +S     E T ED KYIERLEDW          
Subjt:  MEKGDIARPISTVLDGSNYITWAHQMRSFFIGRKLWRIVTGDITKPIKPTSLGKNIRLDITENVDPASSKVTVHEPTTEDAKYIERLEDW----------

Query:  ------------SIGLAHYYQLHSRRVSLIQESGKSVNEYLTTLQPIWTQLDQAKINPDHIHLIKVLMGLRPEYESVRVALLHRNPLPSLDATVQEILFE
                    SIGLAHYYQLHS  V+L QE G+SVN+YL TLQPIWTQLDQAKI+PDHI LIKVLMGLRPEYESVR ALLHRN LPSLDA VQEILFE
Subjt:  ------------SIGLAHYYQLHSRRVSLIQESGKSVNEYLTTLQPIWTQLDQAKINPDHIHLIKVLMGLRPEYESVRVALLHRNPLPSLDATVQEILFE

Query:  EKRLGIVSSLPSDVALATTYLRSTNESTFCK
        +KRLG+VSSLP DVALATT+LR  NE++FCK
Subjt:  EKRLGIVSSLPSDVALATTYLRSTNESTFCK

A0A5A7TPN5 Putative mitochondrial protein1.1e-8071Show/hide
Query:  MEKGDIARPISTVLDGSNYITWAHQMRSFFIGRKLWRIVTGDITKPIKPTSLGKNIRLDITENVDPASSKVTVHEPTTEDAKYIERLEDW----------
        MEKGDIARPIST+LDGSNYITWA+QMRSF IGRKLWRIVTGDITKPIKPT   KN   + TE+ D  +S     E T ED KYIERLEDW          
Subjt:  MEKGDIARPISTVLDGSNYITWAHQMRSFFIGRKLWRIVTGDITKPIKPTSLGKNIRLDITENVDPASSKVTVHEPTTEDAKYIERLEDW----------

Query:  ------------SIGLAHYYQLHSRRVSLIQESGKSVNEYLTTLQPIWTQLDQAKINPDHIHLIKVLMGLRPEYESVRVALLHRNPLPSLDATVQEILFE
                    SIGLAHYYQLHS  V+L QE G+SVN+YL TLQPIWTQLDQAKI+PDHI LIKVLMGLRPEYESVR ALLHRN LPSLDA VQEILFE
Subjt:  ------------SIGLAHYYQLHSRRVSLIQESGKSVNEYLTTLQPIWTQLDQAKINPDHIHLIKVLMGLRPEYESVRVALLHRNPLPSLDATVQEILFE

Query:  EKRLGIVSSLPSDVALATTYLRSTNESTFCK
        +KRLG+VSSLP DVALATT+LR  NE++FCK
Subjt:  EKRLGIVSSLPSDVALATTYLRSTNESTFCK

A0A5A7TXR0 Putative mitochondrial protein4.3e-8265.6Show/hide
Query:  MEKGDIARPISTVLDGSNYITWAHQMRSFFIGRKLWRIVTGDITKPIKPTSLGKNIRLDITENVDPASSKVTVHEPTTEDAKYIERLEDW----------
        MEK  +ARPIST+LDG+NYITWAHQMRSF IGRKLWRIVTGDITKP+KPT   KN   + TE+ D  +S + VHEPT ED +YIERLEDW          
Subjt:  MEKGDIARPISTVLDGSNYITWAHQMRSFFIGRKLWRIVTGDITKPIKPTSLGKNIRLDITENVDPASSKVTVHEPTTEDAKYIERLEDW----------

Query:  -------------------------------SIGLAHYYQLHSRRVSLIQESGKSVNEYLTTLQPIWTQLDQAKINPDHIHLIKVLMGLRPEYESVRVAL
                                       SIGLAHYYQLHS  V+L QE G+SVNEYL T QPIWTQLDQAKI+PDHI LIKVLMGLR EYESVR AL
Subjt:  -------------------------------SIGLAHYYQLHSRRVSLIQESGKSVNEYLTTLQPIWTQLDQAKINPDHIHLIKVLMGLRPEYESVRVAL

Query:  LHRNPLPSLDATVQEILFEEKRLGIVSSLPSDVALATTYLRSTNESTFCK
        LHRNPLPSLDA VQEILFEEKRLGIVSSLPSDVALATT++R  NE++FCK
Subjt:  LHRNPLPSLDATVQEILFEEKRLGIVSSLPSDVALATTYLRSTNESTFCK

A0A5A7VDW0 Retrovirus-related Pol polyprotein from transposon TNT 1-941.5e-7972.02Show/hide
Query:  MEKGDIARPISTVLDGSNYITWAHQMRSFFIGRKLWRIVTGDITKPIKPTSLGKNIRLDITENVDPASSKVTVHEPTTEDAKYIERLEDWS---------
        MEK D+ARPIST+LDG+NYITWAHQMRSF IGRKLWRIVTGDITKP+KP                       VHE + ED +YIERLEDW          
Subjt:  MEKGDIARPISTVLDGSNYITWAHQMRSFFIGRKLWRIVTGDITKPIKPTSLGKNIRLDITENVDPASSKVTVHEPTTEDAKYIERLEDWS---------

Query:  IGLAHYYQLHSRRVSLIQESGKSVNEYLTTLQPIWTQLDQAKINPDHIHLIKVLMGLRPEYESVRVALLHRNPLPSLDATVQEILFEEKRLGIVSSLPSD
        +GLAHYYQLHS  VSL QE G+SVNEYL TLQPIWTQLDQAKI+PDHI LIKVLMGLRPEYESVR ALLHRNPLPSLDA VQEILFEEKRLGIVSSL SD
Subjt:  IGLAHYYQLHSRRVSLIQESGKSVNEYLTTLQPIWTQLDQAKINPDHIHLIKVLMGLRPEYESVRVALLHRNPLPSLDATVQEILFEEKRLGIVSSLPSD

Query:  VALATTYLRSTNESTFCK
        VALATT+LR  NE+ FCK
Subjt:  VALATTYLRSTNESTFCK

A0A5D3DG18 Retrovirus-related Pol polyprotein from transposon TNT 1-941.6e-7663.6Show/hide
Query:  MEKGDIARPISTVLDGSNYITWAHQMRSFFIGRKLWRIVTGDITKPIKPTSLGKNIRLDITENVDPASSKVTVHEPTTEDAKYIERLEDW----------
        MEK D+ARPIST+LDG+NYITWAHQMRSF IGRKLWRIVTGDITKP+KP                       VHE + ED +YIERLEDW          
Subjt:  MEKGDIARPISTVLDGSNYITWAHQMRSFFIGRKLWRIVTGDITKPIKPTSLGKNIRLDITENVDPASSKVTVHEPTTEDAKYIERLEDW----------

Query:  -------------------------------SIGLAHYYQLHSRRVSLIQESGKSVNEYLTTLQPIWTQLDQAKINPDHIHLIKVLMGLRPEYESVRVAL
                                       SIGLAHYYQLHS  VSL QE G+SVNEYL TLQPIWTQLDQAKI+PDHI LIKVLMGLRPEYESVR AL
Subjt:  -------------------------------SIGLAHYYQLHSRRVSLIQESGKSVNEYLTTLQPIWTQLDQAKINPDHIHLIKVLMGLRPEYESVRVAL

Query:  LHRNPLPSLDATVQEILFEEKRLGIVSSLPSDVALATTYLRSTNESTFCK
        LHRNPLPSLDA VQEILFEEKRLGIVSSL SDVALATT+LR  NE+ FCK
Subjt:  LHRNPLPSLDATVQEILFEEKRLGIVSSLPSDVALATTYLRSTNESTFCK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGAAAGGTGATATTGCCCGTCCCATTAGCACTGTTCTGGATGGATCGAATTACATCACCTGGGCCCACCAAATGAGGAGTTTTTTTATTGGTCGAAAACTATGGCG
CATAGTCACTGGCGATATCACCAAACCCATTAAACCCACTTCTCTCGGGAAAAACATAAGACTAGACATCACTGAAAATGTCGATCCTGCCTCCTCTAAAGTCACCGTCC
ATGAGCCCACCACAGAAGATGCCAAGTACATTGAAAGACTTGAGGATTGGTCTATTGGTCTTGCTCACTATTACCAATTACACTCTCGACGCGTTAGTTTAATCCAGGAA
AGCGGAAAATCTGTGAATGAATACTTGACTACTCTTCAACCTATTTGGACTCAGCTAGATCAAGCAAAAATCAACCCCGATCATATTCACCTTATTAAAGTCCTCATGGG
ACTCCGCCCAGAATATGAATCAGTTCGTGTTGCTCTGTTACACCGCAACCCCTTACCATCTCTTGACGCAACCGTTCAGGAGATTTTATTTGAGGAGAAACGTCTTGGCA
TTGTCTCCTCTCTACCATCTGATGTTGCTCTGGCCACCACTTATCTTCGATCTACCAATGAGTCCACTTTTTGCAAAACTACAAACTTCATGGCCACAAGTTTGTTAACT
ATCCTACCATTGAGTGCAGGTATTGTCACAAGAAAGGGCACATCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAGAAAGGTGATATTGCCCGTCCCATTAGCACTGTTCTGGATGGATCGAATTACATCACCTGGGCCCACCAAATGAGGAGTTTTTTTATTGGTCGAAAACTATGGCG
CATAGTCACTGGCGATATCACCAAACCCATTAAACCCACTTCTCTCGGGAAAAACATAAGACTAGACATCACTGAAAATGTCGATCCTGCCTCCTCTAAAGTCACCGTCC
ATGAGCCCACCACAGAAGATGCCAAGTACATTGAAAGACTTGAGGATTGGTCTATTGGTCTTGCTCACTATTACCAATTACACTCTCGACGCGTTAGTTTAATCCAGGAA
AGCGGAAAATCTGTGAATGAATACTTGACTACTCTTCAACCTATTTGGACTCAGCTAGATCAAGCAAAAATCAACCCCGATCATATTCACCTTATTAAAGTCCTCATGGG
ACTCCGCCCAGAATATGAATCAGTTCGTGTTGCTCTGTTACACCGCAACCCCTTACCATCTCTTGACGCAACCGTTCAGGAGATTTTATTTGAGGAGAAACGTCTTGGCA
TTGTCTCCTCTCTACCATCTGATGTTGCTCTGGCCACCACTTATCTTCGATCTACCAATGAGTCCACTTTTTGCAAAACTACAAACTTCATGGCCACAAGTTTGTTAACT
ATCCTACCATTGAGTGCAGGTATTGTCACAAGAAAGGGCACATCCTAG
Protein sequenceShow/hide protein sequence
MEKGDIARPISTVLDGSNYITWAHQMRSFFIGRKLWRIVTGDITKPIKPTSLGKNIRLDITENVDPASSKVTVHEPTTEDAKYIERLEDWSIGLAHYYQLHSRRVSLIQE
SGKSVNEYLTTLQPIWTQLDQAKINPDHIHLIKVLMGLRPEYESVRVALLHRNPLPSLDATVQEILFEEKRLGIVSSLPSDVALATTYLRSTNESTFCKTTNFMATSLLT
ILPLSAGIVTRKGTS