CuGenDBv2

Gene ID	PI0005466
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Reverse transcriptase
Genome location	chr12:10325157..10325381
RNA-Seq Expression	PI0005466
Synteny	PI0005466
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006413 - translational initiation (biological process) GO:0015074 - DNA integration (biological process) GO:0003743 - translation initiation factor activity (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domains	IPR043502 - DNA/RNA polymerase superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0037220.1 reverse transcriptase [Cucumis melo var. makuwa]

3.0e-20

71.62

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Query:  MAISLEPLGTQEEIVPKDILCVLERYSDVMSDSLPKALPQRRIIDHEIKLIPGAKPPAKNAYRMAPPELAKLRK
        MAI L+      E VPK+I+ VLE+Y DVM DSLPK+LP RR+IDHEI+L+PGAKPPAKNAYRMAPPELA+LRK
Subjt:  MAISLEPLGTQEEIVPKDILCVLERYSDVMSDSLPKALPQRRIIDHEIKLIPGAKPPAKNAYRMAPPELAKLRK

KAA0039608.1 reverse transcriptase [Cucumis melo var. makuwa]

8.0e-21

72.97

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Query:  MAISLEPLGTQEEIVPKDILCVLERYSDVMSDSLPKALPQRRIIDHEIKLIPGAKPPAKNAYRMAPPELAKLRK
        MAI L+      E VPK+I+ VLE+Y DVMSDSLPK+LP RR+IDHEI+L+PGAKPPAKNAYRMAPPELA+LRK
Subjt:  MAISLEPLGTQEEIVPKDILCVLERYSDVMSDSLPKALPQRRIIDHEIKLIPGAKPPAKNAYRMAPPELAKLRK

KAA0062527.1 uncharacterized protein E6C27_scaffold43900G00020 [Cucumis melo var. makuwa]

7.7e-24

79.73

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Query:  MAISLEPLGTQEEIVPKDILCVLERYSDVMSDSLPKALPQRRIIDHEIKLIPGAKPPAKNAYRMAPPELAKLRK
        MAI LE L    E VPKDILCVLE+YSDVM DSLPK+LP RR+IDHEI+L+PGAKPPAKNAYRMAPPELA+LRK
Subjt:  MAISLEPLGTQEEIVPKDILCVLERYSDVMSDSLPKALPQRRIIDHEIKLIPGAKPPAKNAYRMAPPELAKLRK

KAA0063412.1 reverse transcriptase [Cucumis melo var. makuwa]

3.0e-20

71.62

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Query:  MAISLEPLGTQEEIVPKDILCVLERYSDVMSDSLPKALPQRRIIDHEIKLIPGAKPPAKNAYRMAPPELAKLRK
        MAI L+      E VPK+I+ VLE+Y DVM DSLPK+LP RR+IDHEI+L+PGAKPPAKNAYRMAPPELA+LRK
Subjt:  MAISLEPLGTQEEIVPKDILCVLERYSDVMSDSLPKALPQRRIIDHEIKLIPGAKPPAKNAYRMAPPELAKLRK

KAA0067557.1 reverse transcriptase [Cucumis melo var. makuwa]

3.0e-20

71.62

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Query:  MAISLEPLGTQEEIVPKDILCVLERYSDVMSDSLPKALPQRRIIDHEIKLIPGAKPPAKNAYRMAPPELAKLRK
        MAI L+      E VPK+I+ VLE+Y DVM DSLPK+LP RR+IDHEI+L+PGAKPPAKNAYRMAPPELA+LRK
Subjt:  MAISLEPLGTQEEIVPKDILCVLERYSDVMSDSLPKALPQRRIIDHEIKLIPGAKPPAKNAYRMAPPELAKLRK

TrEMBL top hits

e value

%identity

Alignment

A0A5A7T9P9 Reverse transcriptase

3.9e-21

72.97

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Query:  MAISLEPLGTQEEIVPKDILCVLERYSDVMSDSLPKALPQRRIIDHEIKLIPGAKPPAKNAYRMAPPELAKLRK
        MAI L+      E VPK+I+ VLE+Y DVMSDSLPK+LP RR+IDHEI+L+PGAKPPAKNAYRMAPPELA+LRK
Subjt:  MAISLEPLGTQEEIVPKDILCVLERYSDVMSDSLPKALPQRRIIDHEIKLIPGAKPPAKNAYRMAPPELAKLRK

A0A5A7UXR6 Reverse transcriptase

1.5e-20

71.62

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Query:  MAISLEPLGTQEEIVPKDILCVLERYSDVMSDSLPKALPQRRIIDHEIKLIPGAKPPAKNAYRMAPPELAKLRK
        MAI L+      E VPK+I+ VLE+Y DVM DSLPK+LP RR+IDHEI+L+PGAKPPAKNAYRMAPPELA+LRK
Subjt:  MAISLEPLGTQEEIVPKDILCVLERYSDVMSDSLPKALPQRRIIDHEIKLIPGAKPPAKNAYRMAPPELAKLRK

A0A5A7V6G0 Retrotrans_gag domain-containing protein

3.7e-24

79.73

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Query:  MAISLEPLGTQEEIVPKDILCVLERYSDVMSDSLPKALPQRRIIDHEIKLIPGAKPPAKNAYRMAPPELAKLRK
        MAI LE L    E VPKDILCVLE+YSDVM DSLPK+LP RR+IDHEI+L+PGAKPPAKNAYRMAPPELA+LRK
Subjt:  MAISLEPLGTQEEIVPKDILCVLERYSDVMSDSLPKALPQRRIIDHEIKLIPGAKPPAKNAYRMAPPELAKLRK

A0A5D3BRZ6 Reverse transcriptase

1.5e-20

71.62

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Query:  MAISLEPLGTQEEIVPKDILCVLERYSDVMSDSLPKALPQRRIIDHEIKLIPGAKPPAKNAYRMAPPELAKLRK
        MAI L+      E VPK+I+ VLE+Y DVM DSLPK+LP RR+IDHEI+L+PGAKPPAKNAYRMAPPELA+LRK
Subjt:  MAISLEPLGTQEEIVPKDILCVLERYSDVMSDSLPKALPQRRIIDHEIKLIPGAKPPAKNAYRMAPPELAKLRK

A0A5D3C4R1 Reverse transcriptase

1.5e-20

71.62

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Query:  MAISLEPLGTQEEIVPKDILCVLERYSDVMSDSLPKALPQRRIIDHEIKLIPGAKPPAKNAYRMAPPELAKLRK
        MAI L+      E VPK+I+ VLE+Y DVM DSLPK+LP RR+IDHEI+L+PGAKPPAKNAYRMAPPELA+LRK
Subjt:  MAISLEPLGTQEEIVPKDILCVLERYSDVMSDSLPKALPQRRIIDHEIKLIPGAKPPAKNAYRMAPPELAKLRK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGCCATTTCGCTTGAACCACTGGGAACTCAAGAGGAGATAGTCCCCAAAGATATTCTGTGTGTCCTAGAGAGGTATAGCGACGTGATGTCTGATAGTTTGCCCAAAGC
TCTACCGCAAAGAAGAATAATTGATCATGAGATCAAACTGATACCAGGGGCAAAACCGCCTGCAAAGAATGCTTATCGTATGGCACCACCAGAGTTGGCGAAACTTCGAA
AATAG

mRNA sequence

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Protein sequence

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MAISLEPLGTQEEIVPKDILCVLERYSDVMSDSLPKALPQRRIIDHEIKLIPGAKPPAKNAYRMAPPELAKLRK

PI0005466 (gene) of Melon (PI 482460) v1 genome