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PI0005473 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0005473
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr12:18016174..18017376
RNA-Seq ExpressionPI0005473
SyntenyPI0005473
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033248.1 uncharacterized protein E6C27_scaffold845G00440 [Cucumis melo var. makuwa]2.5e-1256.25Show/hide
Query:  ITQLAMVVSKLENKGKLPTQLEHANVSVITLRSKKKSYTPPLKGQMLAPKKKDDCKDEDLLETLKKVKISILLLSAIQQI
        +TQL   +SK++ KGKLP QL+HANVSVI+LRS K    PP   + LAPKKK+  K+E+LLE  +KV+I++ LL AIQQ+
Subjt:  ITQLAMVVSKLENKGKLPTQLEHANVSVITLRSKKKSYTPPLKGQMLAPKKKDDCKDEDLLETLKKVKISILLLSAIQQI

KAA0041664.1 retrotransposon gag protein [Cucumis melo var. makuwa]3.9e-1032.29Show/hide
Query:  VCGLLGHPTDKCPRSQKRILTNCKRTQYNSLKKLNHYNMN----IRIDYTN-------ISNQITQLAMVVSKLENKGKLPTQLEHANVSVITLRSKKKSY
        VCGL+GHP DKCP+  + +         N ++K + + MN    I+   TN       +  Q+TQ    +SK++ KGKLP Q ++ANVSVI+LRS K   
Subjt:  VCGLLGHPTDKCPRSQKRILTNCKRTQYNSLKKLNHYNMN----IRIDYTN-------ISNQITQLAMVVSKLENKGKLPTQLEHANVSVITLRSKKKSY

Query:  TPPLKGQ--------------------------------------------------MLAPKKKDDCKDEDLLETLKKVKISILLLSAIQQI
        TP  K +                                                   LAPKKK+  K+E+LLE  +KV+I++ LL+AIQQ+
Subjt:  TPPLKGQ--------------------------------------------------MLAPKKKDDCKDEDLLETLKKVKISILLLSAIQQI

KAA0053321.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.4e-1237.35Show/hide
Query:  VCGLLGHPTDKCPRSQKRI--------------------------LTNCKRTQYNSLKKLNHYNMN--IRIDYTN-------ISNQITQLAMVVSKLENK
        VCGL+GHP DKCP   + +                            N K TQ          N+   I+   TN       +  Q+TQL   +SK++ K
Subjt:  VCGLLGHPTDKCPRSQKRI--------------------------LTNCKRTQYNSLKKLNHYNMN--IRIDYTN-------ISNQITQLAMVVSKLENK

Query:  GKLPTQLEHANVSVITLRSKKKSYTPPLKGQMLAPKKKDDCKDEDLLETLKKVKISILLLSAIQQI
        GKL  Q +HANVS I+LRS K   TP  K + +APKKK+  K+E+LLE  +KV+I++ LL AIQQ+
Subjt:  GKLPTQLEHANVSVITLRSKKKSYTPPLKGQMLAPKKKDDCKDEDLLETLKKVKISILLLSAIQQI

KAA0056048.1 retrotransposon gag protein [Cucumis melo var. makuwa]5.5e-1236.88Show/hide
Query:  VCGLLGHPTDKCPRSQKRILT--------------------------NCKRTQYNSLKKLNHYNM---------NIRIDYTNISNQITQLAMVVSKLENK
        VCGL+GHP DKCP   + +                            N K TQ          N+         N       +  QITQL   +SK++ K
Subjt:  VCGLLGHPTDKCPRSQKRILT--------------------------NCKRTQYNSLKKLNHYNM---------NIRIDYTNISNQITQLAMVVSKLENK

Query:  GKLPTQLEHANVSVITLRSKKKSYTPPLKGQMLAPKKKDDCKDEDLLETLKKVKISILLL
        GKLP Q  HANVS I+LRS K   TPP K + LAPKKK+  K+E+LLE  +KV+I++  L
Subjt:  GKLPTQLEHANVSVITLRSKKKSYTPPLKGQMLAPKKKDDCKDEDLLETLKKVKISILLL

TYK09438.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.5e-0931.25Show/hide
Query:  VCGLLGHPTDKCPRSQKRILTNCKRTQYNSLKKLNHYNMN----IRIDYTN-------ISNQITQLAMVVSKLENKGKLPTQLEHANVSVITLRSKKKSY
        VCGL+GHP DKCP   + +         N +++ + Y  N    I+   TN       +  Q+TQL   +SK++ KGK PTQ +H N+S I+LRS K   
Subjt:  VCGLLGHPTDKCPRSQKRILTNCKRTQYNSLKKLNHYNMN----IRIDYTN-------ISNQITQLAMVVSKLENKGKLPTQLEHANVSVITLRSKKKSY

Query:  TPPLKGQ--------------------------------------------------MLAPKKKDDCKDEDLLETLKKVKISILLLSAIQQI
        TP  K +                                                   LAPKKK+  K+E+LLE  +KV+I++ LL AIQQ+
Subjt:  TPPLKGQ--------------------------------------------------MLAPKKKDDCKDEDLLETLKKVKISILLLSAIQQI

TrEMBL top hitse value%identityAlignment
A0A5A7SRT4 Uncharacterized protein1.2e-1256.25Show/hide
Query:  ITQLAMVVSKLENKGKLPTQLEHANVSVITLRSKKKSYTPPLKGQMLAPKKKDDCKDEDLLETLKKVKISILLLSAIQQI
        +TQL   +SK++ KGKLP QL+HANVSVI+LRS K    PP   + LAPKKK+  K+E+LLE  +KV+I++ LL AIQQ+
Subjt:  ITQLAMVVSKLENKGKLPTQLEHANVSVITLRSKKKSYTPPLKGQMLAPKKKDDCKDEDLLETLKKVKISILLLSAIQQI

A0A5A7TE06 Retrotransposon gag protein1.9e-1032.29Show/hide
Query:  VCGLLGHPTDKCPRSQKRILTNCKRTQYNSLKKLNHYNMN----IRIDYTN-------ISNQITQLAMVVSKLENKGKLPTQLEHANVSVITLRSKKKSY
        VCGL+GHP DKCP+  + +         N ++K + + MN    I+   TN       +  Q+TQ    +SK++ KGKLP Q ++ANVSVI+LRS K   
Subjt:  VCGLLGHPTDKCPRSQKRILTNCKRTQYNSLKKLNHYNMN----IRIDYTN-------ISNQITQLAMVVSKLENKGKLPTQLEHANVSVITLRSKKKSY

Query:  TPPLKGQ--------------------------------------------------MLAPKKKDDCKDEDLLETLKKVKISILLLSAIQQI
        TP  K +                                                   LAPKKK+  K+E+LLE  +KV+I++ LL+AIQQ+
Subjt:  TPPLKGQ--------------------------------------------------MLAPKKKDDCKDEDLLETLKKVKISILLLSAIQQI

A0A5A7UID2 Retrotransposon gag protein7.0e-1337.35Show/hide
Query:  VCGLLGHPTDKCPRSQKRI--------------------------LTNCKRTQYNSLKKLNHYNMN--IRIDYTN-------ISNQITQLAMVVSKLENK
        VCGL+GHP DKCP   + +                            N K TQ          N+   I+   TN       +  Q+TQL   +SK++ K
Subjt:  VCGLLGHPTDKCPRSQKRI--------------------------LTNCKRTQYNSLKKLNHYNMN--IRIDYTN-------ISNQITQLAMVVSKLENK

Query:  GKLPTQLEHANVSVITLRSKKKSYTPPLKGQMLAPKKKDDCKDEDLLETLKKVKISILLLSAIQQI
        GKL  Q +HANVS I+LRS K   TP  K + +APKKK+  K+E+LLE  +KV+I++ LL AIQQ+
Subjt:  GKLPTQLEHANVSVITLRSKKKSYTPPLKGQMLAPKKKDDCKDEDLLETLKKVKISILLLSAIQQI

A0A5A7ULU1 Retrotransposon gag protein2.6e-1236.88Show/hide
Query:  VCGLLGHPTDKCPRSQKRILT--------------------------NCKRTQYNSLKKLNHYNM---------NIRIDYTNISNQITQLAMVVSKLENK
        VCGL+GHP DKCP   + +                            N K TQ          N+         N       +  QITQL   +SK++ K
Subjt:  VCGLLGHPTDKCPRSQKRILT--------------------------NCKRTQYNSLKKLNHYNM---------NIRIDYTNISNQITQLAMVVSKLENK

Query:  GKLPTQLEHANVSVITLRSKKKSYTPPLKGQMLAPKKKDDCKDEDLLETLKKVKISILLL
        GKLP Q  HANVS I+LRS K   TPP K + LAPKKK+  K+E+LLE  +KV+I++  L
Subjt:  GKLPTQLEHANVSVITLRSKKKSYTPPLKGQMLAPKKKDDCKDEDLLETLKKVKISILLL

A0A5D3CDZ4 Retrotransposon gag protein7.2e-1031.25Show/hide
Query:  VCGLLGHPTDKCPRSQKRILTNCKRTQYNSLKKLNHYNMN----IRIDYTN-------ISNQITQLAMVVSKLENKGKLPTQLEHANVSVITLRSKKKSY
        VCGL+GHP DKCP   + +         N +++ + Y  N    I+   TN       +  Q+TQL   +SK++ KGK PTQ +H N+S I+LRS K   
Subjt:  VCGLLGHPTDKCPRSQKRILTNCKRTQYNSLKKLNHYNMN----IRIDYTN-------ISNQITQLAMVVSKLENKGKLPTQLEHANVSVITLRSKKKSY

Query:  TPPLKGQ--------------------------------------------------MLAPKKKDDCKDEDLLETLKKVKISILLLSAIQQI
        TP  K +                                                   LAPKKK+  K+E+LLE  +KV+I++ LL AIQQ+
Subjt:  TPPLKGQ--------------------------------------------------MLAPKKKDDCKDEDLLETLKKVKISILLLSAIQQI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACAAATCAACAAGTTATGCTATACGAAGTATGTGGATTGTTAGGGCATCCAACTGACAAGTGTCCGAGGTCACAAAAGAGGATATTGACCAATTGCAAAAGGACTCA
ATACAACTCACTCAAGAAACTAAATCACTACAATATGAACATAAGGATCGATTACACAAACATTAGCAATCAAATTACACAGTTGGCTATGGTAGTGAGTAAGCTCGAAA
ACAAAGGCAAGCTTCCCACTCAACTAGAGCATGCGAACGTAAGTGTTATAACGCTTAGAAGTAAAAAAAAATCCTATACTCCACCACTCAAAGGCCAAATGTTGGCACCT
AAGAAAAAGGACGATTGCAAGGATGAAGACCTTTTGGAAACATTAAAAAAGGTCAAGATTAGCATTCTACTCCTTAGTGCAATCCAACAAATACTAAGCAATTTGAAGGT
AGAATTTTGTATTGATGTTGTTTCAGAGCTTAATTGGACAAATATGAAATCTAATGACATCAAAAGATGCAAACGGGCAAAAAAAAGCTATTTGGATTCTGCCTTACATA
GGCGTGGCACCTCACGATGCAATGCACGATTCTGTAAGGTAGAGAAGTTAATAGGCTTTCAAAGTCGTAGGCGCCGCCTTAGAGTGCAGGAACTTCGAGATGTTGCCGTG
CACGAAGGCCTATCAGCACCGTGA
mRNA sequenceShow/hide mRNA sequence
ATGACAAATCAACAAGTTATGCTATACGAAGTATGTGGATTGTTAGGGCATCCAACTGACAAGTGTCCGAGGTCACAAAAGAGGATATTGACCAATTGCAAAAGGACTCA
ATACAACTCACTCAAGAAACTAAATCACTACAATATGAACATAAGGATCGATTACACAAACATTAGCAATCAAATTACACAGTTGGCTATGGTAGTGAGTAAGCTCGAAA
ACAAAGGCAAGCTTCCCACTCAACTAGAGCATGCGAACGTAAGTGTTATAACGCTTAGAAGTAAAAAAAAATCCTATACTCCACCACTCAAAGGCCAAATGTTGGCACCT
AAGAAAAAGGACGATTGCAAGGATGAAGACCTTTTGGAAACATTAAAAAAGGTCAAGATTAGCATTCTACTCCTTAGTGCAATCCAACAAATACTAAGCAATTTGAAGGT
AGAATTTTGTATTGATGTTGTTTCAGAGCTTAATTGGACAAATATGAAATCTAATGACATCAAAAGATGCAAACGGGCAAAAAAAAGCTATTTGGATTCTGCCTTACATA
GGCGTGGCACCTCACGATGCAATGCACGATTCTGTAAGGTAGAGAAGTTAATAGGCTTTCAAAGTCGTAGGCGCCGCCTTAGAGTGCAGGAACTTCGAGATGTTGCCGTG
CACGAAGGCCTATCAGCACCGTGA
Protein sequenceShow/hide protein sequence
MTNQQVMLYEVCGLLGHPTDKCPRSQKRILTNCKRTQYNSLKKLNHYNMNIRIDYTNISNQITQLAMVVSKLENKGKLPTQLEHANVSVITLRSKKKSYTPPLKGQMLAP
KKKDDCKDEDLLETLKKVKISILLLSAIQQILSNLKVEFCIDVVSELNWTNMKSNDIKRCKRAKKSYLDSALHRRGTSRCNARFCKVEKLIGFQSRRRRLRVQELRDVAV
HEGLSAP