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PI0005478 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0005478
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionReverse transcriptase
Genome locationchr04:24575981..24576489
RNA-Seq ExpressionPI0005478
SyntenyPI0005478
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domainsIPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0057280.1 uncharacterized protein E6C27_scaffold280G001210 [Cucumis melo var. makuwa]1.5e-3389.87Show/hide
Query:  MPDSLPKFLPPRRIIDHEIKLIPGAKPPAKNVYCMAPPELAELRKQLDELLSTGFIRPAKAPYGAPVLFQKKKDGSLRL
        MPDSLPK LPPRR+IDHEI+L+PGAKPPAKN YCMAPPELAELRKQLDELL+ GFIRPAKAPYGAPVLFQKKKDG LRL
Subjt:  MPDSLPKFLPPRRIIDHEIKLIPGAKPPAKNVYCMAPPELAELRKQLDELLSTGFIRPAKAPYGAPVLFQKKKDGSLRL
KAA0062527.1 uncharacterized protein E6C27_scaffold43900G00020 [Cucumis melo var. makuwa]5.8e-3391.14Show/hide
Query:  MPDSLPKFLPPRRIIDHEIKLIPGAKPPAKNVYCMAPPELAELRKQLDELLSTGFIRPAKAPYGAPVLFQKKKDGSLRL
        MPDSLPK LPPRR+IDHEI+L+PGAKPPAKN Y MAPPELAELRKQLDELLS GFIRPAKAPYGAPVLFQKKKDGSLRL
Subjt:  MPDSLPKFLPPRRIIDHEIKLIPGAKPPAKNVYCMAPPELAELRKQLDELLSTGFIRPAKAPYGAPVLFQKKKDGSLRL
KAA0066677.1 uncharacterized protein E6C27_scaffold271G00020 [Cucumis melo var. makuwa]9.9e-3389.87Show/hide
Query:  MPDSLPKFLPPRRIIDHEIKLIPGAKPPAKNVYCMAPPELAELRKQLDELLSTGFIRPAKAPYGAPVLFQKKKDGSLRL
        MPDSLPK LPPRR+IDHEI+L+PGAKPPAKN Y MAPPELAELRKQLDELL+ GFIRPAKAPYGAPVLFQKKKDGSLRL
Subjt:  MPDSLPKFLPPRRIIDHEIKLIPGAKPPAKNVYCMAPPELAELRKQLDELLSTGFIRPAKAPYGAPVLFQKKKDGSLRL
TYK07954.1 reverse transcriptase [Cucumis melo var. makuwa]9.9e-3389.87Show/hide
Query:  MPDSLPKFLPPRRIIDHEIKLIPGAKPPAKNVYCMAPPELAELRKQLDELLSTGFIRPAKAPYGAPVLFQKKKDGSLRL
        MPDSLPK LPPRR+IDHEI+L+PGAKPPAKN Y MAPPELAELRKQLDELL+ GFIRPAKAPYGAPVLFQKKKDGSLRL
Subjt:  MPDSLPKFLPPRRIIDHEIKLIPGAKPPAKNVYCMAPPELAELRKQLDELLSTGFIRPAKAPYGAPVLFQKKKDGSLRL
TYK28653.1 reverse transcriptase [Cucumis melo var. makuwa]9.9e-3389.87Show/hide
Query:  MPDSLPKFLPPRRIIDHEIKLIPGAKPPAKNVYCMAPPELAELRKQLDELLSTGFIRPAKAPYGAPVLFQKKKDGSLRL
        MPDSLPK LPPRR+IDHEI+L+PGAKPPAKN Y MAPPELAELRKQLDELL+ GFIRPAKAPYGAPVLFQKKKDGSLRL
Subjt:  MPDSLPKFLPPRRIIDHEIKLIPGAKPPAKNVYCMAPPELAELRKQLDELLSTGFIRPAKAPYGAPVLFQKKKDGSLRL
TrEMBL top hitse value%identityAlignment
A0A5A7UQ94 Uncharacterized protein7.4e-3489.87Show/hide
Query:  MPDSLPKFLPPRRIIDHEIKLIPGAKPPAKNVYCMAPPELAELRKQLDELLSTGFIRPAKAPYGAPVLFQKKKDGSLRL
        MPDSLPK LPPRR+IDHEI+L+PGAKPPAKN YCMAPPELAELRKQLDELL+ GFIRPAKAPYGAPVLFQKKKDG LRL
Subjt:  MPDSLPKFLPPRRIIDHEIKLIPGAKPPAKNVYCMAPPELAELRKQLDELLSTGFIRPAKAPYGAPVLFQKKKDGSLRL
A0A5A7V6G0 Retrotrans_gag domain-containing protein2.8e-3391.14Show/hide
Query:  MPDSLPKFLPPRRIIDHEIKLIPGAKPPAKNVYCMAPPELAELRKQLDELLSTGFIRPAKAPYGAPVLFQKKKDGSLRL
        MPDSLPK LPPRR+IDHEI+L+PGAKPPAKN Y MAPPELAELRKQLDELLS GFIRPAKAPYGAPVLFQKKKDGSLRL
Subjt:  MPDSLPKFLPPRRIIDHEIKLIPGAKPPAKNVYCMAPPELAELRKQLDELLSTGFIRPAKAPYGAPVLFQKKKDGSLRL
A0A5A7VHT2 Reverse transcriptase domain-containing protein4.8e-3389.87Show/hide
Query:  MPDSLPKFLPPRRIIDHEIKLIPGAKPPAKNVYCMAPPELAELRKQLDELLSTGFIRPAKAPYGAPVLFQKKKDGSLRL
        MPDSLPK LPPRR+IDHEI+L+PGAKPPAKN Y MAPPELAELRKQLDELL+ GFIRPAKAPYGAPVLFQKKKDGSLRL
Subjt:  MPDSLPKFLPPRRIIDHEIKLIPGAKPPAKNVYCMAPPELAELRKQLDELLSTGFIRPAKAPYGAPVLFQKKKDGSLRL
A0A5D3C9P8 Reverse transcriptase4.8e-3389.87Show/hide
Query:  MPDSLPKFLPPRRIIDHEIKLIPGAKPPAKNVYCMAPPELAELRKQLDELLSTGFIRPAKAPYGAPVLFQKKKDGSLRL
        MPDSLPK LPPRR+IDHEI+L+PGAKPPAKN Y MAPPELAELRKQLDELL+ GFIRPAKAPYGAPVLFQKKKDGSLRL
Subjt:  MPDSLPKFLPPRRIIDHEIKLIPGAKPPAKNVYCMAPPELAELRKQLDELLSTGFIRPAKAPYGAPVLFQKKKDGSLRL
A0A5D3DY42 Reverse transcriptase4.8e-3389.87Show/hide
Query:  MPDSLPKFLPPRRIIDHEIKLIPGAKPPAKNVYCMAPPELAELRKQLDELLSTGFIRPAKAPYGAPVLFQKKKDGSLRL
        MPDSLPK LPPRR+IDHEI+L+PGAKPPAKN Y MAPPELAELRKQLDELL+ GFIRPAKAPYGAPVLFQKKKDGSLRL
Subjt:  MPDSLPKFLPPRRIIDHEIKLIPGAKPPAKNVYCMAPPELAELRKQLDELLSTGFIRPAKAPYGAPVLFQKKKDGSLRL
SwissProt top hitse value%identityAlignment
Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein3.7e-0636.36Show/hide
Query:  LPPRRI------IDHEIKLIPGAKPPAKNVYCMAPPELAELRKQLDELLSTGFIRPAKAPYGAPVLFQKKKDGSLRL
        LPPR        + H+I++ PGA+ P    Y +      E+ K + +LL   FI P+K+P  +PV+   KKDG+ RL
Subjt:  LPPRRI------IDHEIKLIPGAKPPAKNVYCMAPPELAELRKQLDELLSTGFIRPAKAPYGAPVLFQKKKDGSLRL
Q99315 Transposon Ty3-G Gag-Pol polyprotein3.7e-0636.36Show/hide
Query:  LPPRRI------IDHEIKLIPGAKPPAKNVYCMAPPELAELRKQLDELLSTGFIRPAKAPYGAPVLFQKKKDGSLRL
        LPPR        + H+I++ PGA+ P    Y +      E+ K + +LL   FI P+K+P  +PV+   KKDG+ RL
Subjt:  LPPRRI------IDHEIKLIPGAKPPAKNVYCMAPPELAELRKQLDELLSTGFIRPAKAPYGAPVLFQKKKDGSLRL
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCCGATAGTTTGCCCAAATTTCTACCGCCGAGAAGGATAATTGACCACGAGATCAAACTTATACCCGGAGCGAAGCCGCCCGCAAAGAATGTTTATTGTATGGCACC
ACCAGAGCTGGCTGAACTTCGAAAACAGTTAGACGAGTTGCTGAGTACAGGGTTCATCAGGCCTGCAAAAGCTCCATATGGGGCCCCGGTTCTTTTCCAAAAGAAGAAGG
ATGGGAGCTTACGTCTATTATTTCTCAAAATTGGATCTGCGATCGGGATACTATCAAGTAAGGATTGTCGAAGGGGACGAGCCAAAGACAACATGTGTCACCAGGTACGG
AGCATTCGAATTCCTCGTAATGCCCTTTGGTCTCACCAATGCCCCTGCAACCTTTTGTATACTAATGAACCAAGTCTTCCATGA
mRNA sequenceShow/hide mRNA sequence
ATGCCCGATAGTTTGCCCAAATTTCTACCGCCGAGAAGGATAATTGACCACGAGATCAAACTTATACCCGGAGCGAAGCCGCCCGCAAAGAATGTTTATTGTATGGCACC
ACCAGAGCTGGCTGAACTTCGAAAACAGTTAGACGAGTTGCTGAGTACAGGGTTCATCAGGCCTGCAAAAGCTCCATATGGGGCCCCGGTTCTTTTCCAAAAGAAGAAGG
ATGGGAGCTTACGTCTATTATTTCTCAAAATTGGATCTGCGATCGGGATACTATCAAGTAAGGATTGTCGAAGGGGACGAGCCAAAGACAACATGTGTCACCAGGTACGG
AGCATTCGAATTCCTCGTAATGCCCTTTGGTCTCACCAATGCCCCTGCAACCTTTTGTATACTAATGAACCAAGTCTTCCATGA
Protein sequenceShow/hide protein sequence
MPDSLPKFLPPRRIIDHEIKLIPGAKPPAKNVYCMAPPELAELRKQLDELLSTGFIRPAKAPYGAPVLFQKKKDGSLRLLFLKIGSAIGILSSKDCRRGRAKDNMCHQVR
SIRIPRNALWSHQCPCNLLYTNEPSLP