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PI0005487 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0005487
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr03:13813792..13817766
RNA-Seq ExpressionPI0005487
SyntenyPI0005487
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN33993.1 retrotransposon gag protein [Cucumis melo subsp. melo]5.7e-6273.94Show/hide
Query:  MTTLFTSFVQGGALKITQCGVCGLVGHPNDKCPELTKDVNAIRMYDPHGNTYNSRWRDNPNLRWGNDNQKPTQATSSFSNQGMNIEDIVKALATNILSFQ
        MTTL TSFVQG  LK+T+CGVC LVGHPNDKCPE+ +DVN +R YDP+GNTYNS WRDNPNLRWGNDNQK TQA  + SNQG N+EDI+KALATN LSFQ
Subjt:  MTTLFTSFVQGGALKITQCGVCGLVGHPNDKCPELTKDVNAIRMYDPHGNTYNSRWRDNPNLRWGNDNQKPTQATSSFSNQGMNIEDIVKALATNILSFQ

Query:  QEMKQQMTHLTTAISKLEGKGKLLAQPNHANVSAISLRSSKILEIPYSEEKKVTPNPIPLENKKK
        QEMKQQMT LTTAISK++GKGKL AQP++ANVSAISLRS KIL+ P ++EKKVT   +PL +K +
Subjt:  QEMKQQMTHLTTAISKLEGKGKLLAQPNHANVSAISLRSSKILEIPYSEEKKVTPNPIPLENKKK

KAA0047407.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.1e-6475.15Show/hide
Query:  MTTLFTSFVQGGALKITQCGVCGLVGHPNDKCPELTKDVNAIRMYDPHGNTYNSRWRDNPNLRWGNDNQKPTQATSSFSNQGMNIEDIVKALATNILSFQ
        MTTL TSFVQG  LK+T+CGVCGLVGHPNDKCPE+ +DVN +R YDPHGNTYNS WRDNPNLRWGNDNQK TQA S+ SNQG N+EDI+KALATN LSFQ
Subjt:  MTTLFTSFVQGGALKITQCGVCGLVGHPNDKCPELTKDVNAIRMYDPHGNTYNSRWRDNPNLRWGNDNQKPTQATSSFSNQGMNIEDIVKALATNILSFQ

Query:  QEMKQQMTHLTTAISKLEGKGKLLAQPNHANVSAISLRSSKILEIPYSEEKKVTPNPIPLENKKK
        QEMKQQMT LTTAISK++GKGKL AQ N+ANVSA+SLRS KIL+ P ++EKK T  P+PL  K +
Subjt:  QEMKQQMTHLTTAISKLEGKGKLLAQPNHANVSAISLRSSKILEIPYSEEKKVTPNPIPLENKKK

KAA0051761.1 retrotransposon gag protein [Cucumis melo var. makuwa]3.5e-6474.55Show/hide
Query:  MTTLFTSFVQGGALKITQCGVCGLVGHPNDKCPELTKDVNAIRMYDPHGNTYNSRWRDNPNLRWGNDNQKPTQATSSFSNQGMNIEDIVKALATNILSFQ
        MT L TSFVQG  LK+T+CGVCGLVGHPNDKCPE+ +DVN ++ YDPHGNTYNS WRDNPNLRWGNDNQK TQA  + SNQG N+EDI+KALATN LSFQ
Subjt:  MTTLFTSFVQGGALKITQCGVCGLVGHPNDKCPELTKDVNAIRMYDPHGNTYNSRWRDNPNLRWGNDNQKPTQATSSFSNQGMNIEDIVKALATNILSFQ

Query:  QEMKQQMTHLTTAISKLEGKGKLLAQPNHANVSAISLRSSKILEIPYSEEKKVTPNPIPLENKKK
        QEMKQQMT LTT ISK++GKGKLLAQP+HANVS ISLRS KIL+ P ++EKKVT  P+PL +K +
Subjt:  QEMKQQMTHLTTAISKLEGKGKLLAQPNHANVSAISLRSSKILEIPYSEEKKVTPNPIPLENKKK

KAA0065554.1 retrotransposon gag protein [Cucumis melo var. makuwa]4.3e-6274.55Show/hide
Query:  MTTLFTSFVQGGALKITQCGVCGLVGHPNDKCPELTKDVNAIRMYDPHGNTYNSRWRDNPNLRWGNDNQKPTQATSSFSNQGMNIEDIVKALATNILSFQ
        MTTL TSFVQG  LK+T+CGVCGLVGHPNDK PE+ +DVN +R YDPHGNTYNS WRDNP LRWGNDNQK  QA S+ SNQG N+EDI+KALA N LSFQ
Subjt:  MTTLFTSFVQGGALKITQCGVCGLVGHPNDKCPELTKDVNAIRMYDPHGNTYNSRWRDNPNLRWGNDNQKPTQATSSFSNQGMNIEDIVKALATNILSFQ

Query:  QEMKQQMTHLTTAISKLEGKGKLLAQPNHANVSAISLRSSKILEIPYSEEKKVTPNPIPLENKKK
        QEMKQQMT LTTAISK++GKGKL AQPNHANVSAISLRS KIL+ P ++EKKVT   +PL +K +
Subjt:  QEMKQQMTHLTTAISKLEGKGKLLAQPNHANVSAISLRSSKILEIPYSEEKKVTPNPIPLENKKK

XP_016902871.1 PREDICTED: uncharacterized protein LOC107991910 [Cucumis melo]3.5e-6474.55Show/hide
Query:  MTTLFTSFVQGGALKITQCGVCGLVGHPNDKCPELTKDVNAIRMYDPHGNTYNSRWRDNPNLRWGNDNQKPTQATSSFSNQGMNIEDIVKALATNILSFQ
        MT L TSFVQG  LK+T+CGVCGLVGHPNDKCPE+ +DVN ++ YDPHGNTYNS WRDNPNLRWGNDNQK TQA  + SNQG N+EDI+KALATN LSFQ
Subjt:  MTTLFTSFVQGGALKITQCGVCGLVGHPNDKCPELTKDVNAIRMYDPHGNTYNSRWRDNPNLRWGNDNQKPTQATSSFSNQGMNIEDIVKALATNILSFQ

Query:  QEMKQQMTHLTTAISKLEGKGKLLAQPNHANVSAISLRSSKILEIPYSEEKKVTPNPIPLENKKK
        QEMKQQMT LTT ISK++GKGKLLAQP+HANVS ISLRS KIL+ P ++EKKVT  P+PL +K +
Subjt:  QEMKQQMTHLTTAISKLEGKGKLLAQPNHANVSAISLRSSKILEIPYSEEKKVTPNPIPLENKKK

TrEMBL top hitse value%identityAlignment
A0A1S4E3R2 uncharacterized protein LOC1079919101.7e-6474.55Show/hide
Query:  MTTLFTSFVQGGALKITQCGVCGLVGHPNDKCPELTKDVNAIRMYDPHGNTYNSRWRDNPNLRWGNDNQKPTQATSSFSNQGMNIEDIVKALATNILSFQ
        MT L TSFVQG  LK+T+CGVCGLVGHPNDKCPE+ +DVN ++ YDPHGNTYNS WRDNPNLRWGNDNQK TQA  + SNQG N+EDI+KALATN LSFQ
Subjt:  MTTLFTSFVQGGALKITQCGVCGLVGHPNDKCPELTKDVNAIRMYDPHGNTYNSRWRDNPNLRWGNDNQKPTQATSSFSNQGMNIEDIVKALATNILSFQ

Query:  QEMKQQMTHLTTAISKLEGKGKLLAQPNHANVSAISLRSSKILEIPYSEEKKVTPNPIPLENKKK
        QEMKQQMT LTT ISK++GKGKLLAQP+HANVS ISLRS KIL+ P ++EKKVT  P+PL +K +
Subjt:  QEMKQQMTHLTTAISKLEGKGKLLAQPNHANVSAISLRSSKILEIPYSEEKKVTPNPIPLENKKK

A0A5A7VE49 Retrotransposon gag protein2.1e-6274.55Show/hide
Query:  MTTLFTSFVQGGALKITQCGVCGLVGHPNDKCPELTKDVNAIRMYDPHGNTYNSRWRDNPNLRWGNDNQKPTQATSSFSNQGMNIEDIVKALATNILSFQ
        MTTL TSFVQG  LK+T+CGVCGLVGHPNDK PE+ +DVN +R YDPHGNTYNS WRDNP LRWGNDNQK  QA S+ SNQG N+EDI+KALA N LSFQ
Subjt:  MTTLFTSFVQGGALKITQCGVCGLVGHPNDKCPELTKDVNAIRMYDPHGNTYNSRWRDNPNLRWGNDNQKPTQATSSFSNQGMNIEDIVKALATNILSFQ

Query:  QEMKQQMTHLTTAISKLEGKGKLLAQPNHANVSAISLRSSKILEIPYSEEKKVTPNPIPLENKKK
        QEMKQQMT LTTAISK++GKGKL AQPNHANVSAISLRS KIL+ P ++EKKVT   +PL +K +
Subjt:  QEMKQQMTHLTTAISKLEGKGKLLAQPNHANVSAISLRSSKILEIPYSEEKKVTPNPIPLENKKK

A0A5A7VQ60 Retrotransposon gag protein2.7e-6274.39Show/hide
Query:  TTLFTSFVQGGALKITQCGVCGLVGHPNDKCPELTKDVNAIRMYDPHGNTYNSRWRDNPNLRWGNDNQKPTQATSSFSNQGMNIEDIVKALATNILSFQQ
        TTL TSFVQG  LK+T+CGVCGLVGH N+KCPE+ +DVN +R YDPH NTYNS WRDNPNLRWGNDNQK TQA S+ SNQG N+EDI+KALATN LSFQQ
Subjt:  TTLFTSFVQGGALKITQCGVCGLVGHPNDKCPELTKDVNAIRMYDPHGNTYNSRWRDNPNLRWGNDNQKPTQATSSFSNQGMNIEDIVKALATNILSFQQ

Query:  EMKQQMTHLTTAISKLEGKGKLLAQPNHANVSAISLRSSKILEIPYSEEKKVTPNPIPLENKKK
        EMKQQMT LTTAISK++GKGKL AQ +HANVSAISLRS KIL+ P ++EKKVT  P+PL +K +
Subjt:  EMKQQMTHLTTAISKLEGKGKLLAQPNHANVSAISLRSSKILEIPYSEEKKVTPNPIPLENKKK

A0A5D3CRR8 Retrotransposon gag protein1.0e-6475.15Show/hide
Query:  MTTLFTSFVQGGALKITQCGVCGLVGHPNDKCPELTKDVNAIRMYDPHGNTYNSRWRDNPNLRWGNDNQKPTQATSSFSNQGMNIEDIVKALATNILSFQ
        MTTL TSFVQG  LK+T+CGVCGLVGHPNDKCPE+ +DVN +R YDPHGNTYNS WRDNPNLRWGNDNQK TQA S+ SNQG N+EDI+KALATN LSFQ
Subjt:  MTTLFTSFVQGGALKITQCGVCGLVGHPNDKCPELTKDVNAIRMYDPHGNTYNSRWRDNPNLRWGNDNQKPTQATSSFSNQGMNIEDIVKALATNILSFQ

Query:  QEMKQQMTHLTTAISKLEGKGKLLAQPNHANVSAISLRSSKILEIPYSEEKKVTPNPIPLENKKK
        QEMKQQMT LTTAISK++GKGKL AQ N+ANVSA+SLRS KIL+ P ++EKK T  P+PL  K +
Subjt:  QEMKQQMTHLTTAISKLEGKGKLLAQPNHANVSAISLRSSKILEIPYSEEKKVTPNPIPLENKKK

A0A5D3DCG3 Retrotransposon gag protein1.7e-6474.55Show/hide
Query:  MTTLFTSFVQGGALKITQCGVCGLVGHPNDKCPELTKDVNAIRMYDPHGNTYNSRWRDNPNLRWGNDNQKPTQATSSFSNQGMNIEDIVKALATNILSFQ
        MT L TSFVQG  LK+T+CGVCGLVGHPNDKCPE+ +DVN ++ YDPHGNTYNS WRDNPNLRWGNDNQK TQA  + SNQG N+EDI+KALATN LSFQ
Subjt:  MTTLFTSFVQGGALKITQCGVCGLVGHPNDKCPELTKDVNAIRMYDPHGNTYNSRWRDNPNLRWGNDNQKPTQATSSFSNQGMNIEDIVKALATNILSFQ

Query:  QEMKQQMTHLTTAISKLEGKGKLLAQPNHANVSAISLRSSKILEIPYSEEKKVTPNPIPLENKKK
        QEMKQQMT LTT ISK++GKGKLLAQP+HANVS ISLRS KIL+ P ++EKKVT  P+PL +K +
Subjt:  QEMKQQMTHLTTAISKLEGKGKLLAQPNHANVSAISLRSSKILEIPYSEEKKVTPNPIPLENKKK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACAACTCTTTTTACTTCTTTTGTGCAAGGTGGTGCTCTCAAAATAACCCAATGTGGAGTTTGTGGCTTAGTTGGTCATCCAAATGACAAATGTCCCGAGTTGACCAA
GGATGTGAATGCTATTAGGATGTATGACCCCCACGGTAATACATACAATTCCAGATGGAGAGATAACCCAAACTTGAGATGGGGGAATGACAACCAAAAGCCCACCCAAG
CAACATCCTCCTTTTCAAACCAAGGTATGAATATTGAAGATATAGTCAAAGCTTTAGCTACTAACATTCTTTCTTTTCAACAAGAGATGAAACAACAAATGACTCATCTT
ACTACTGCCATAAGCAAGTTGGAAGGAAAAGGCAAACTTCTGGCCCAACCGAACCATGCAAATGTGAGTGCCATCTCACTAAGAAGTAGTAAGATTCTTGAAATCCCTTA
TAGTGAAGAAAAAAAGGTAACTCCCAATCCTATCCCTCTTGAAAATAAGAAAAAAATTCAATTTCAGCTGAATCACGCGTTCAAACCCGAAGAGCGTGTGAACAAGTTTA
TGAGTGACGGTGAACAACCACAATTCGAGCTTGACCCTGAAATTGAACTTTTCGACATAATCGACGAAGAGGGAGGCAAAGAAACGCAAGAAGAATGGAAAATGATAACA
ATAGAAACGCTCCTCCGTCGCAAGCTGCCCAAGAACCAAATGCAGCCTCCATGGCGCATGACCTTGACAGGCCAATTAGGTCATATGCTGCGCCCAACCTCTATAACTTC
AACCCAGGGATCGCTTACCCTGTGTTCGGCGAAAATGCAAGGCATTTCACCTGAGGAATTGAGATTTTCACTTTTCCCATTAGCTCTTAGGGATGAGGCGAAAAGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGACAACTCTTTTTACTTCTTTTGTGCAAGGTGGTGCTCTCAAAATAACCCAATGTGGAGTTTGTGGCTTAGTTGGTCATCCAAATGACAAATGTCCCGAGTTGACCAA
GGATGTGAATGCTATTAGGATGTATGACCCCCACGGTAATACATACAATTCCAGATGGAGAGATAACCCAAACTTGAGATGGGGGAATGACAACCAAAAGCCCACCCAAG
CAACATCCTCCTTTTCAAACCAAGGTATGAATATTGAAGATATAGTCAAAGCTTTAGCTACTAACATTCTTTCTTTTCAACAAGAGATGAAACAACAAATGACTCATCTT
ACTACTGCCATAAGCAAGTTGGAAGGAAAAGGCAAACTTCTGGCCCAACCGAACCATGCAAATGTGAGTGCCATCTCACTAAGAAGTAGTAAGATTCTTGAAATCCCTTA
TAGTGAAGAAAAAAAGGTAACTCCCAATCCTATCCCTCTTGAAAATAAGAAAAAAATTCAATTTCAGCTGAATCACGCGTTCAAACCCGAAGAGCGTGTGAACAAGTTTA
TGAGTGACGGTGAACAACCACAATTCGAGCTTGACCCTGAAATTGAACTTTTCGACATAATCGACGAAGAGGGAGGCAAAGAAACGCAAGAAGAATGGAAAATGATAACA
ATAGAAACGCTCCTCCGTCGCAAGCTGCCCAAGAACCAAATGCAGCCTCCATGGCGCATGACCTTGACAGGCCAATTAGGTCATATGCTGCGCCCAACCTCTATAACTTC
AACCCAGGGATCGCTTACCCTGTGTTCGGCGAAAATGCAAGGCATTTCACCTGAGGAATTGAGATTTTCACTTTTCCCATTAGCTCTTAGGGATGAGGCGAAAAGGTGA
Protein sequenceShow/hide protein sequence
MTTLFTSFVQGGALKITQCGVCGLVGHPNDKCPELTKDVNAIRMYDPHGNTYNSRWRDNPNLRWGNDNQKPTQATSSFSNQGMNIEDIVKALATNILSFQQEMKQQMTHL
TTAISKLEGKGKLLAQPNHANVSAISLRSSKILEIPYSEEKKVTPNPIPLENKKKIQFQLNHAFKPEERVNKFMSDGEQPQFELDPEIELFDIIDEEGGKETQEEWKMIT
IETLLRRKLPKNQMQPPWRMTLTGQLGHMLRPTSITSTQGSLTLCSAKMQGISPEELRFSLFPLALRDEAKR