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PI0005504 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0005504
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionDNA-directed RNA polymerases I, II, and III subunit RPABC5
Genome locationchr03:7384947..7386475
RNA-Seq ExpressionPI0005504
SyntenyPI0005504
Gene Ontology termsGO:0006360 - transcription by RNA polymerase I (biological process)
GO:0006366 - transcription by RNA polymerase II (biological process)
GO:0042797 - tRNA transcription by RNA polymerase III (biological process)
GO:0005665 - RNA polymerase II, core complex (cellular component)
GO:0005666 - RNA polymerase III complex (cellular component)
GO:0005736 - RNA polymerase I complex (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR000268 - DNA-directed RNA polymerase, subunit N/Rpb10
IPR020789 - RNA polymerases, subunit N, zinc binding site
IPR023580 - RNA polymerase subunit RPB10


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6598222.1 DNA-directed RNA polymerase subunit 10-like protein, partial [Cucurbita argyrosperma subsp. sororia]3.3e-3297.1Show/hide
Query:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYTEGDALDALNLVRYCCRRMLMTHVDLIEKLLNYNTLDKSD
        MIIPVRCFTCGKVIGNKWDHYLDLLQADY+EGDALDAL LVRYCCRRMLMTHVDLIEKLLNYNTLDKSD
Subjt:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYTEGDALDALNLVRYCCRRMLMTHVDLIEKLLNYNTLDKSD

XP_004138685.1 DNA-directed RNA polymerases I, II, and III subunit RPABC5 [Cucumis sativus]3.9e-3397.18Show/hide
Query:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYTEGDALDALNLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDTS
        MIIPVRCFTCGKVIGNKWDHYLDLLQADY+EGDALDAL LVRYCCRRMLMTHVDLIEKLLNYNTLDKSDTS
Subjt:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYTEGDALDALNLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDTS

XP_010696273.1 PREDICTED: DNA-directed RNA polymerases I, II, and III subunit RPABC5 [Beta vulgaris subsp. vulgaris]1.9e-3297.18Show/hide
Query:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYTEGDALDALNLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDTS
        MIIPVRCFTCGKVIGNKWD YLDLLQADYTEGDALDAL LVRYCCRRMLMTHVDLIEKLLNYNTLDKSDTS
Subjt:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYTEGDALDALNLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDTS

XP_020188036.1 DNA-directed RNA polymerases I, II, and III subunit RPABC5 [Aegilops tauschii subsp. strangulata]2.5e-3294.37Show/hide
Query:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYTEGDALDALNLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDTS
        MIIPVRCFTCGKVIGNKWDHYLDLLQADYTEGDALDAL LVRYCCRRMLMTHVDLIEKLLNYNTL+K++TS
Subjt:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYTEGDALDALNLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDTS

XP_022961651.1 DNA-directed RNA polymerase subunit 10-like protein [Cucurbita moschata]1.9e-3295.77Show/hide
Query:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYTEGDALDALNLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDTS
        MIIPVRCFTCGKVIGNKWDHYLDLLQADY+EGDALDAL LVRYCCRRMLMTHVDLIEKLLNYNTLDKSD S
Subjt:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYTEGDALDALNLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDTS

TrEMBL top hitse value%identityAlignment
A0A0A0LPW4 Uncharacterized protein1.9e-3397.18Show/hide
Query:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYTEGDALDALNLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDTS
        MIIPVRCFTCGKVIGNKWDHYLDLLQADY+EGDALDAL LVRYCCRRMLMTHVDLIEKLLNYNTLDKSDTS
Subjt:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYTEGDALDALNLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDTS

A0A1S3C3L9 DNA-directed RNA polymerases I, II, and III subunit RPABC51.9e-3397.18Show/hide
Query:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYTEGDALDALNLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDTS
        MIIPVRCFTCGKVIGNKWDHYLDLLQADY+EGDALDAL LVRYCCRRMLMTHVDLIEKLLNYNTLDKSDTS
Subjt:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYTEGDALDALNLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDTS

A0A6J1BRM3 DNA-directed RNA polymerases I, II, and III subunit RPABC51.9e-3397.18Show/hide
Query:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYTEGDALDALNLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDTS
        MIIPVRCFTCGKVIGNKWDHYLDLLQADY+EGDALDAL LVRYCCRRMLMTHVDLIEKLLNYNTLDKSDTS
Subjt:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYTEGDALDALNLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDTS

A0A6J1GGE0 DNA-directed RNA polymerases I, II, and III subunit RPABC51.9e-3397.18Show/hide
Query:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYTEGDALDALNLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDTS
        MIIPVRCFTCGKVIGNKWDHYLDLLQADY+EGDALDAL LVRYCCRRMLMTHVDLIEKLLNYNTLDKSDTS
Subjt:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYTEGDALDALNLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDTS

A0A6J1KRF4 DNA-directed RNA polymerases I, II, and III subunit RPABC51.9e-3397.18Show/hide
Query:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYTEGDALDALNLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDTS
        MIIPVRCFTCGKVIGNKWDHYLDLLQADY+EGDALDAL LVRYCCRRMLMTHVDLIEKLLNYNTLDKSDTS
Subjt:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYTEGDALDALNLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDTS

SwissProt top hitse value%identityAlignment
Q32P78 DNA-directed RNA polymerases I, II, and III subunit RPABC51.5e-2780.6Show/hide
Query:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYTEGDALDALNLVRYCCRRMLMTHVDLIEKLLNYNTLDK
        MIIPVRCFTCGK++GNKW+ YL LLQA+YTEGDALDAL L RYCCRRML+ HVDLIEKLLNY  L+K
Subjt:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYTEGDALDALNLVRYCCRRMLMTHVDLIEKLLNYNTLDK

Q39290 DNA-directed RNA polymerases I, II, and III subunit RPABC52.2e-3494.37Show/hide
Query:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYTEGDALDALNLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDTS
        MIIPVRCFTCGKVIGNKWD YLDLLQ DYTEGDALDALNLVRYCCRRMLMTHVDLIEKLLNYNTL+KSD S
Subjt:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYTEGDALDALNLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDTS

Q55AB6 DNA-directed RNA polymerases I, II, and III subunit rpabc56.7e-2887.69Show/hide
Query:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYTEGDALDALNLVRYCCRRMLMTHVDLIEKLLNYNTL
        MIIPVRCFTCGKVIGNKWD YL LLQ DYTEGDALDAL L RYCCRRML+THVDLIEKLLNY  L
Subjt:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYTEGDALDALNLVRYCCRRMLMTHVDLIEKLLNYNTL

Q8LFJ6 DNA-directed RNA polymerases II, IV and V subunit 106.3e-3492.96Show/hide
Query:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYTEGDALDALNLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDTS
        MIIPVRCFTCGKVIGNKWD YLDLLQ DYTEGDALDAL LVRYCCRRMLMTHVDLIEKLLNYNTL+KSD S
Subjt:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYTEGDALDALNLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDTS

Q9SYA6 DNA-directed RNA polymerase subunit 10-like protein1.5e-3289.86Show/hide
Query:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYTEGDALDALNLVRYCCRRMLMTHVDLIEKLLNYNTLDKSD
        MI+PVRCFTCGKVIGNKWD YL+LLQADY EGDALDAL LVRYCCRRMLMTHVDLIEKLLNYNT++KSD
Subjt:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYTEGDALDALNLVRYCCRRMLMTHVDLIEKLLNYNTLDKSD

Arabidopsis top hitse value%identityAlignment
AT1G11475.1 RNA polymerases N / 8 kDa subunit4.5e-3592.96Show/hide
Query:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYTEGDALDALNLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDTS
        MIIPVRCFTCGKVIGNKWD YLDLLQ DYTEGDALDAL LVRYCCRRMLMTHVDLIEKLLNYNTL+KSD S
Subjt:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYTEGDALDALNLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDTS

AT1G61700.1 RNA polymerases N / 8 kDa subunit1.1e-3389.86Show/hide
Query:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYTEGDALDALNLVRYCCRRMLMTHVDLIEKLLNYNTLDKSD
        MI+PVRCFTCGKVIGNKWD YL+LLQADY EGDALDAL LVRYCCRRMLMTHVDLIEKLLNYNT++KSD
Subjt:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYTEGDALDALNLVRYCCRRMLMTHVDLIEKLLNYNTLDKSD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATCATTCCAGTTCGTTGCTTCACTTGCGGAAAGGTGATTGGAAACAAATGGGATCATTACCTTGATCTTCTGCAGGCAGATTATACAGAAGGTGATGCACTTGATGC
TTTGAATTTGGTTCGCTACTGCTGTAGGCGAATGCTCATGACTCATGTTGACCTTATCGAGAAGCTTCTTAATTACAATACTCTGGATAAGTCCGATACCAGTTAG
mRNA sequenceShow/hide mRNA sequence
GTCGGATAGAGGCAAAACCTCTCGGAACCCTAGAAGGTGAAGTTGGAGGCGTCGTCGGTCGGCAAAAAGGAAAGATGATCATTCCAGTTCGTTGCTTCACTTGCGGAAAG
GTGATTGGAAACAAATGGGATCATTACCTTGATCTTCTGCAGGCAGATTATACAGAAGGTGATGCACTTGATGCTTTGAATTTGGTTCGCTACTGCTGTAGGCGAATGCT
CATGACTCATGTTGACCTTATCGAGAAGCTTCTTAATTACAATACTCTGGATAAGTCCGATACCAGTTAGCCAAAGGACGAGTTTTCTGATTCTTCACGTCTAGCCGTAA
TGGCTTTTTTATGGTGTTTGTGTTCAGTTAAGAGAAAAGAAAAACTACTGGAATATTCAGTTCAGTGCAGGGCTCGAGTTAAGTTATGTCTTGGCATTCTAGTTTGTTTA
CTTATGGAGTTATACGGACCCAAGTACTTAATCTTCTACGTGTTTATTAGTATTTAGGAGTTGTATATTAGATCCGTGTAGCATTTTCCATAGGATGCAGTTACTTACTG
GTTTTCATTCAGCTAGCATTGACGTTTTTGTGGTGTTTGCATCCAGCTAAGAGAAAACAAAATTTATAGGATCATGTAGTGCAGGATTTGATTTAAGCTATATCTTGGTG
TCCTGATTTGTTTACATATTGATTCATACGAGCCCAAGTATTTATCTTCTATGTTTTTATTAGTATTTAGGAGTTATATATGAGAGCCCAGTTTGTTTGTTTATTGATTC
ATACGAGCCCAAGTGTTTAATCCTCTATGTGTTTATTAGTTTTTAGGAGTAATATATCATAGCCATGTTCTATTTTAAGGATGTAGTTACTTTAGTTATTGATTTCCATT
TAGTTTTTGTTTGACGTTTCGATGGTGTTTGCATCCAGCCAAGAGAAAAGAAAAACTATAGCAATATTCAGTGCAGGACTTAAAGTTGTATCTTGGTGTCCCAATTTGTT
TACCTATTGATTCGTATGAACCCAATTTTTTTAGTTTTTAGCGTTTCTATATCAAATCCGTGTATCATAGGATGTAGTTACTGATTGATTGATTTCTTTCAGTTGCTATC
GAGACGTTTCTATTTTGTTTGAGAAAAGGAAAACTATAGGAATATTCAGTGCAGGACTTAAAG
Protein sequenceShow/hide protein sequence
MIIPVRCFTCGKVIGNKWDHYLDLLQADYTEGDALDALNLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDTS