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PI0005553 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0005553
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRibonuclease H
Genome locationchr10:12692808..12693542
RNA-Seq ExpressionPI0005553
SyntenyPI0005553
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0110165 - cellular anatomical structure (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0140640 - catalytic activity, acting on a nucleic acid (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022143495.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111013372 [Momordica charantia]4.2e-3954.73Show/hide
Query:  QLTPVPIDPLQPPYPKWYNPNARCDYHARAIGHSTENCTALKHRVQALFKAGLLNFKKDNGSDVNKNPLPNHQNSQVNAIEVHEVGFKD-VMSMVTSKEE
        +L  VP+DP+QPPYP+W + NARCDYH  AIGHS ENCTALK+RVQAL KAG LNFKK+NG +V+ NPLPNH N Q+NAIE  E+  K  V  + T  EE
Subjt:  QLTPVPIDPLQPPYPKWYNPNARCDYHARAIGHSTENCTALKHRVQALFKAGLLNFKKDNGSDVNKNPLPNHQNSQVNAIEVHEVGFKD-VMSMVTSKEE

Query:  LFHMLSNNRMIKQENFQDEVPDNQYDDRLICLYHVGAKGHSIDQCPHF
        LF +L  +  +  E     +    YD+ L C +H GAKGH+++QC  F
Subjt:  LFHMLSNNRMIKQENFQDEVPDNQYDDRLICLYHVGAKGHSIDQCPHF

XP_022147189.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111016200 [Momordica charantia]1.2e-3853.05Show/hide
Query:  LPSPYYQPYVNNVANNQLTPVPIDPLQPPYPKWYNPNARCDYHARAIGHSTENCTALKHRVQALFKAGLLNFKKDNGSDVNKNPLPNHQNSQVNAIEVHE
        +P  Y +       NNQL PVP+DP+QPPYP+WY+ NARCDYHA AI HSTENCT LK+RVQAL KAG  NFKK+NG DV+K  L NHQN Q+NAIE   
Subjt:  LPSPYYQPYVNNVANNQLTPVPIDPLQPPYPKWYNPNARCDYHARAIGHSTENCTALKHRVQALFKAGLLNFKKDNGSDVNKNPLPNHQNSQVNAIEVHE

Query:  VGFKD-VMSMVTSKEELFHMLSNNRMIKQENFQDEVPDNQYDDRLICLYHVGAKGHSIDQCPHF
        +  K  V  + T   ELF +L  +  I  E    +     YD+ L C +H GAKGHS++QC  F
Subjt:  VGFKD-VMSMVTSKEELFHMLSNNRMIKQENFQDEVPDNQYDDRLICLYHVGAKGHSIDQCPHF

XP_022155098.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111022231, partial [Momordica charantia]2.3e-4050.61Show/hide
Query:  LPSPYYQPYVNNVANNQLTPVPIDPLQPPYPKWYNPNARCDYHARAIGHSTENCTALKHRVQALFKAGLLNFKKDNGSDVNKNPLPNHQNSQVNAIEVHE
        +P  Y +       NNQL PVP+DP+QPPYP WY+ N RCDYHA AIGHSTENCTALK+RVQAL KAG L FKK+N  DV  NPLPNH+N Q+NA+E   
Subjt:  LPSPYYQPYVNNVANNQLTPVPIDPLQPPYPKWYNPNARCDYHARAIGHSTENCTALKHRVQALFKAGLLNFKKDNGSDVNKNPLPNHQNSQVNAIEVHE

Query:  VGFKDVMSMVTS-KEELFHMLSNNRMIKQENFQDEVPDNQYDDRLICLYHVGAKGHSIDQCPHF
        +  +  +S +T+  + LF +L  +  +  E+   ++   +YD+ L C YH GA+GH ++QC  F
Subjt:  VGFKDVMSMVTS-KEELFHMLSNNRMIKQENFQDEVPDNQYDDRLICLYHVGAKGHSIDQCPHF

XP_022157796.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111024415 [Momordica charantia]9.1e-4258.78Show/hide
Query:  QLTPVPIDPLQPPYPKWYNPNARCDYHARAIGHSTENCTALKHRVQALFKAGLLNFKKDNGSDVNKNPLPNHQNSQVNAIEVHEVGFKD-VMSMVTSKEE
        +LTPVP+DP+QP YP+WY+ NARCDYHA AIGHSTENCTALK+RVQAL KAG LNFKK+N  DV+KNPL NHQN Q+NAIE   +  K  V  + T KEE
Subjt:  QLTPVPIDPLQPPYPKWYNPNARCDYHARAIGHSTENCTALKHRVQALFKAGLLNFKKDNGSDVNKNPLPNHQNSQVNAIEVHEVGFKD-VMSMVTSKEE

Query:  LFHMLSNNRMIKQENFQDEVPDNQYDDRLICLYHVGAKGHSIDQCPHF
        LF +L  +  +  E     +   +YD+ L C +H GAKGHS++QC  F
Subjt:  LFHMLSNNRMIKQENFQDEVPDNQYDDRLICLYHVGAKGHSIDQCPHF

XP_022158986.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111025431 [Momordica charantia]1.5e-4456.71Show/hide
Query:  LPSPYYQPYVNNVANNQLTPVPIDPLQPPYPKWYNPNARCDYHARAIGHSTENCTALKHRVQALFKAGLLNFKKDNGSDVNKNPLPNHQNSQVNAIEVHE
        +P  Y +       NNQL PVP+DP+QPPYP+WY+ NARCDYHA AIGHSTENCTALK+RVQAL KAG LNFKK+NG DV+KNPLPNHQN Q+NAIE  E
Subjt:  LPSPYYQPYVNNVANNQLTPVPIDPLQPPYPKWYNPNARCDYHARAIGHSTENCTALKHRVQALFKAGLLNFKKDNGSDVNKNPLPNHQNSQVNAIEVHE

Query:  VGFKD-VMSMVTSKEELFHMLSNNRMIKQENFQDEVPDNQYDDRLICLYHVGAKGHSIDQCPHF
        +  K  V  + T   ELF +L  +  +  E     +    YD+ L C +H GAKGHS++QC  F
Subjt:  VGFKD-VMSMVTSKEELFHMLSNNRMIKQENFQDEVPDNQYDDRLICLYHVGAKGHSIDQCPHF

TrEMBL top hitse value%identityAlignment
A0A6J1CNY7 Ribonuclease H1.2e-3955.41Show/hide
Query:  QLTPVPIDPLQPPYPKWYNPNARCDYHARAIGHSTENCTALKHRVQALFKAGLLNFKKDNGSDVNKNPLPNHQNSQVNAIEVHEVGFKD-VMSMVTSKEE
        +L  VP+DP+QPPYP+W + NARCDYH  AIGHS ENCTALK+RVQAL KAG LNFKK+NG DV+ NPLPNH N Q+NAIE  E+  K  V  + T  EE
Subjt:  QLTPVPIDPLQPPYPKWYNPNARCDYHARAIGHSTENCTALKHRVQALFKAGLLNFKKDNGSDVNKNPLPNHQNSQVNAIEVHEVGFKD-VMSMVTSKEE

Query:  LFHMLSNNRMIKQENFQDEVPDNQYDDRLICLYHVGAKGHSIDQCPHF
        LF +L  +  +  E     +    YD+ L C +H GAKGH+++QC  F
Subjt:  LFHMLSNNRMIKQENFQDEVPDNQYDDRLICLYHVGAKGHSIDQCPHF

A0A6J1D099 Ribonuclease H6.0e-3953.05Show/hide
Query:  LPSPYYQPYVNNVANNQLTPVPIDPLQPPYPKWYNPNARCDYHARAIGHSTENCTALKHRVQALFKAGLLNFKKDNGSDVNKNPLPNHQNSQVNAIEVHE
        +P  Y +       NNQL PVP+DP+QPPYP+WY+ NARCDYHA AI HSTENCT LK+RVQAL KAG  NFKK+NG DV+K  L NHQN Q+NAIE   
Subjt:  LPSPYYQPYVNNVANNQLTPVPIDPLQPPYPKWYNPNARCDYHARAIGHSTENCTALKHRVQALFKAGLLNFKKDNGSDVNKNPLPNHQNSQVNAIEVHE

Query:  VGFKD-VMSMVTSKEELFHMLSNNRMIKQENFQDEVPDNQYDDRLICLYHVGAKGHSIDQCPHF
        +  K  V  + T   ELF +L  +  I  E    +     YD+ L C +H GAKGHS++QC  F
Subjt:  VGFKD-VMSMVTSKEELFHMLSNNRMIKQENFQDEVPDNQYDDRLICLYHVGAKGHSIDQCPHF

A0A6J1DM29 LOW QUALITY PROTEIN: uncharacterized protein LOC1110222311.1e-4050.61Show/hide
Query:  LPSPYYQPYVNNVANNQLTPVPIDPLQPPYPKWYNPNARCDYHARAIGHSTENCTALKHRVQALFKAGLLNFKKDNGSDVNKNPLPNHQNSQVNAIEVHE
        +P  Y +       NNQL PVP+DP+QPPYP WY+ N RCDYHA AIGHSTENCTALK+RVQAL KAG L FKK+N  DV  NPLPNH+N Q+NA+E   
Subjt:  LPSPYYQPYVNNVANNQLTPVPIDPLQPPYPKWYNPNARCDYHARAIGHSTENCTALKHRVQALFKAGLLNFKKDNGSDVNKNPLPNHQNSQVNAIEVHE

Query:  VGFKDVMSMVTS-KEELFHMLSNNRMIKQENFQDEVPDNQYDDRLICLYHVGAKGHSIDQCPHF
        +  +  +S +T+  + LF +L  +  +  E+   ++   +YD+ L C YH GA+GH ++QC  F
Subjt:  VGFKDVMSMVTS-KEELFHMLSNNRMIKQENFQDEVPDNQYDDRLICLYHVGAKGHSIDQCPHF

A0A6J1DZ90 Ribonuclease H4.4e-4258.78Show/hide
Query:  QLTPVPIDPLQPPYPKWYNPNARCDYHARAIGHSTENCTALKHRVQALFKAGLLNFKKDNGSDVNKNPLPNHQNSQVNAIEVHEVGFKD-VMSMVTSKEE
        +LTPVP+DP+QP YP+WY+ NARCDYHA AIGHSTENCTALK+RVQAL KAG LNFKK+N  DV+KNPL NHQN Q+NAIE   +  K  V  + T KEE
Subjt:  QLTPVPIDPLQPPYPKWYNPNARCDYHARAIGHSTENCTALKHRVQALFKAGLLNFKKDNGSDVNKNPLPNHQNSQVNAIEVHEVGFKD-VMSMVTSKEE

Query:  LFHMLSNNRMIKQENFQDEVPDNQYDDRLICLYHVGAKGHSIDQCPHF
        LF +L  +  +  E     +   +YD+ L C +H GAKGHS++QC  F
Subjt:  LFHMLSNNRMIKQENFQDEVPDNQYDDRLICLYHVGAKGHSIDQCPHF

A0A6J1E2J7 Ribonuclease H7.3e-4556.71Show/hide
Query:  LPSPYYQPYVNNVANNQLTPVPIDPLQPPYPKWYNPNARCDYHARAIGHSTENCTALKHRVQALFKAGLLNFKKDNGSDVNKNPLPNHQNSQVNAIEVHE
        +P  Y +       NNQL PVP+DP+QPPYP+WY+ NARCDYHA AIGHSTENCTALK+RVQAL KAG LNFKK+NG DV+KNPLPNHQN Q+NAIE  E
Subjt:  LPSPYYQPYVNNVANNQLTPVPIDPLQPPYPKWYNPNARCDYHARAIGHSTENCTALKHRVQALFKAGLLNFKKDNGSDVNKNPLPNHQNSQVNAIEVHE

Query:  VGFKD-VMSMVTSKEELFHMLSNNRMIKQENFQDEVPDNQYDDRLICLYHVGAKGHSIDQCPHF
        +  K  V  + T   ELF +L  +  +  E     +    YD+ L C +H GAKGHS++QC  F
Subjt:  VGFKD-VMSMVTSKEELFHMLSNNRMIKQENFQDEVPDNQYDDRLICLYHVGAKGHSIDQCPHF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGACCACCATCGTACCAAAATCCTGGAATTCCTTATTATCATAATAACTATTATGCACTGCCTAGCCCATACTATCAACCGTATGTAAATAATGTCGCGAATAACCA
ACTAACACCTGTACCGATAGATCCATTACAACCTCCTTACCCAAAGTGGTATAACCCAAATGCTCGTTGTGATTATCATGCAAGAGCAATTGGACATTCAACTGAGAATT
GCACTGCACTTAAACATAGGGTACAAGCACTATTCAAGGCAGGATTGCTTAATTTTAAGAAGGACAATGGGTCTGATGTGAATAAAAACCCTCTTCCAAACCACCAAAAT
TCCCAAGTAAATGCTATAGAGGTGCATGAGGTAGGTTTTAAGGATGTTATGAGTATGGTAACATCCAAGGAAGAGCTTTTTCACATGTTGTCCAACAACAGAATGATCAA
GCAAGAGAATTTTCAAGACGAGGTCCCTGATAACCAATATGACGATAGGCTAATATGTTTGTACCATGTTGGGGCAAAGGGTCACTCTATTGACCAATGCCCTCATTTCT
ACTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGACCACCATCGTACCAAAATCCTGGAATTCCTTATTATCATAATAACTATTATGCACTGCCTAGCCCATACTATCAACCGTATGTAAATAATGTCGCGAATAACCA
ACTAACACCTGTACCGATAGATCCATTACAACCTCCTTACCCAAAGTGGTATAACCCAAATGCTCGTTGTGATTATCATGCAAGAGCAATTGGACATTCAACTGAGAATT
GCACTGCACTTAAACATAGGGTACAAGCACTATTCAAGGCAGGATTGCTTAATTTTAAGAAGGACAATGGGTCTGATGTGAATAAAAACCCTCTTCCAAACCACCAAAAT
TCCCAAGTAAATGCTATAGAGGTGCATGAGGTAGGTTTTAAGGATGTTATGAGTATGGTAACATCCAAGGAAGAGCTTTTTCACATGTTGTCCAACAACAGAATGATCAA
GCAAGAGAATTTTCAAGACGAGGTCCCTGATAACCAATATGACGATAGGCTAATATGTTTGTACCATGTTGGGGCAAAGGGTCACTCTATTGACCAATGCCCTCATTTCT
ACTAG
Protein sequenceShow/hide protein sequence
MGPPSYQNPGIPYYHNNYYALPSPYYQPYVNNVANNQLTPVPIDPLQPPYPKWYNPNARCDYHARAIGHSTENCTALKHRVQALFKAGLLNFKKDNGSDVNKNPLPNHQN
SQVNAIEVHEVGFKDVMSMVTSKEELFHMLSNNRMIKQENFQDEVPDNQYDDRLICLYHVGAKGHSIDQCPHFY