CuGenDBv2

Gene ID	PI0005585
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Retrotrans_gag domain-containing protein
Genome location	chr07:19093052..19093390
RNA-Seq Expression	PI0005585
Synteny	PI0005585
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006310 - DNA recombination (biological process) GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process) GO:0003723 - RNA binding (molecular function) GO:0003887 - DNA-directed DNA polymerase activity (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0036933.1 uncharacterized protein E6C27_scaffold86G00060 [Cucumis melo var. makuwa]

1.7e-43

81.08

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Query:  MIGNATTNFSDIIVIGERIEYRIKYGRITEATTEYEGIKKGTTSKKKEREVHTVGFPNSGKHKSSFGQKEHEQGFPSYINNVSHVPYNNYVPAHTFSGTP
        MIGNA+TNFSDIIVIGERIEY IK+GR+ EATTEY GIKKGT SKKKE EVH +GFPNSGKHKS FG +++EQ FPSYINNVSH+PYN+YVPAHT S TP
Subjt:  MIGNATTNFSDIIVIGERIEYRIKYGRITEATTEYEGIKKGTTSKKKEREVHTVGFPNSGKHKSSFGQKEHEQGFPSYINNVSHVPYNNYVPAHTFSGTP

Query:  KLVNSNSPRPF
        K VNSNSPRPF
Subjt:  KLVNSNSPRPF

KAA0036942.1 uncharacterized protein E6C27_scaffold86G00180 [Cucumis melo var. makuwa]

1.0e-43

81.08

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Query:  MIGNATTNFSDIIVIGERIEYRIKYGRITEATTEYEGIKKGTTSKKKEREVHTVGFPNSGKHKSSFGQKEHEQGFPSYINNVSHVPYNNYVPAHTFSGTP
        MIGNA+TNFSDIIVIGERIEY IK+GR+ EATTEY GIKKGT SKKKE EVH +GFPNSGKHKS FGQ+++EQ FPSYI+NVSH+PYN+YVPAHT S TP
Subjt:  MIGNATTNFSDIIVIGERIEYRIKYGRITEATTEYEGIKKGTTSKKKEREVHTVGFPNSGKHKSSFGQKEHEQGFPSYINNVSHVPYNNYVPAHTFSGTP

Query:  KLVNSNSPRPF
        K VNSNSPRPF
Subjt:  KLVNSNSPRPF

KAA0036950.1 uncharacterized protein E6C27_scaffold86G00300 [Cucumis melo var. makuwa]

1.0e-43

81.08

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Query:  MIGNATTNFSDIIVIGERIEYRIKYGRITEATTEYEGIKKGTTSKKKEREVHTVGFPNSGKHKSSFGQKEHEQGFPSYINNVSHVPYNNYVPAHTFSGTP
        MIGNA+TNFSDIIVIGERIEY IK+GR+ EATTEY GIKKGT SKKKE EVH +GFPNSGKHKS FGQ+++EQ FPSYI+NVSH+PYN+YVPAHT S TP
Subjt:  MIGNATTNFSDIIVIGERIEYRIKYGRITEATTEYEGIKKGTTSKKKEREVHTVGFPNSGKHKSSFGQKEHEQGFPSYINNVSHVPYNNYVPAHTFSGTP

Query:  KLVNSNSPRPF
        K VNSNSPRPF
Subjt:  KLVNSNSPRPF

KAA0040172.1 uncharacterized protein E6C27_scaffold118G00070 [Cucumis melo var. makuwa]

5.0e-43

79.28

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Query:  MIGNATTNFSDIIVIGERIEYRIKYGRITEATTEYEGIKKGTTSKKKEREVHTVGFPNSGKHKSSFGQKEHEQGFPSYINNVSHVPYNNYVPAHTFSGTP
        MIGNA+TNFSDIIVIGERIEY IK+GR+TEATTEY GIKKGT SKKKE EVH +GFPNSGKHKS FGQ+++EQ FPSYI+NVSH+PYN+YVP HT S TP
Subjt:  MIGNATTNFSDIIVIGERIEYRIKYGRITEATTEYEGIKKGTTSKKKEREVHTVGFPNSGKHKSSFGQKEHEQGFPSYINNVSHVPYNNYVPAHTFSGTP

Query:  KLVNSNSPRPF
        KL+  NSPRPF
Subjt:  KLVNSNSPRPF

TYK16441.1 uncharacterized protein E5676_scaffold21G002390 [Cucumis melo var. makuwa]

1.3e-43

80.18

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Query:  MIGNATTNFSDIIVIGERIEYRIKYGRITEATTEYEGIKKGTTSKKKEREVHTVGFPNSGKHKSSFGQKEHEQGFPSYINNVSHVPYNNYVPAHTFSGTP
        MIGNA+TNFSDIIVIGERIEY IK+GR+TEATTEY GIKKGT SKKKE EVHT+GFPNSGKHKS FGQ+++EQ FPSYI+NVSH+PYN+YVP HT S TP
Subjt:  MIGNATTNFSDIIVIGERIEYRIKYGRITEATTEYEGIKKGTTSKKKEREVHTVGFPNSGKHKSSFGQKEHEQGFPSYINNVSHVPYNNYVPAHTFSGTP

Query:  KLVNSNSPRPF
        KL+  NSPRPF
Subjt:  KLVNSNSPRPF

TrEMBL top hits

e value

%identity

Alignment

A0A5A7T0H8 Uncharacterized protein

4.9e-44

81.08

Show/hide

Query:  MIGNATTNFSDIIVIGERIEYRIKYGRITEATTEYEGIKKGTTSKKKEREVHTVGFPNSGKHKSSFGQKEHEQGFPSYINNVSHVPYNNYVPAHTFSGTP
        MIGNA+TNFSDIIVIGERIEY IK+GR+ EATTEY GIKKGT SKKKE EVH +GFPNSGKHKS FGQ+++EQ FPSYI+NVSH+PYN+YVPAHT S TP
Subjt:  MIGNATTNFSDIIVIGERIEYRIKYGRITEATTEYEGIKKGTTSKKKEREVHTVGFPNSGKHKSSFGQKEHEQGFPSYINNVSHVPYNNYVPAHTFSGTP

Query:  KLVNSNSPRPF
        K VNSNSPRPF
Subjt:  KLVNSNSPRPF

A0A5A7T0R1 Uncharacterized protein

4.9e-44

81.08

Show/hide

Query:  MIGNATTNFSDIIVIGERIEYRIKYGRITEATTEYEGIKKGTTSKKKEREVHTVGFPNSGKHKSSFGQKEHEQGFPSYINNVSHVPYNNYVPAHTFSGTP
        MIGNA+TNFSDIIVIGERIEY IK+GR+ EATTEY GIKKGT SKKKE EVH +GFPNSGKHKS FGQ+++EQ FPSYI+NVSH+PYN+YVPAHT S TP
Subjt:  MIGNATTNFSDIIVIGERIEYRIKYGRITEATTEYEGIKKGTTSKKKEREVHTVGFPNSGKHKSSFGQKEHEQGFPSYINNVSHVPYNNYVPAHTFSGTP

Query:  KLVNSNSPRPF
        K VNSNSPRPF
Subjt:  KLVNSNSPRPF

A0A5A7T1W2 Retrotrans_gag domain-containing protein

8.4e-44

81.08

Show/hide

Query:  MIGNATTNFSDIIVIGERIEYRIKYGRITEATTEYEGIKKGTTSKKKEREVHTVGFPNSGKHKSSFGQKEHEQGFPSYINNVSHVPYNNYVPAHTFSGTP
        MIGNA+TNFSDIIVIGERIEY IK+GR+ EATTEY GIKKGT SKKKE EVH +GFPNSGKHKS FG +++EQ FPSYINNVSH+PYN+YVPAHT S TP
Subjt:  MIGNATTNFSDIIVIGERIEYRIKYGRITEATTEYEGIKKGTTSKKKEREVHTVGFPNSGKHKSSFGQKEHEQGFPSYINNVSHVPYNNYVPAHTFSGTP

Query:  KLVNSNSPRPF
        K VNSNSPRPF
Subjt:  KLVNSNSPRPF

A0A5A7T9Q5 RNase H domain-containing protein

2.4e-43

79.28

Show/hide

Query:  MIGNATTNFSDIIVIGERIEYRIKYGRITEATTEYEGIKKGTTSKKKEREVHTVGFPNSGKHKSSFGQKEHEQGFPSYINNVSHVPYNNYVPAHTFSGTP
        MIGNA+TNFSDIIVIGERIEY IK+GR+TEATTEY GIKKGT SKKKE EVH +GFPNSGKHKS FGQ+++EQ FPSYI+NVSH+PYN+YVP HT S TP
Subjt:  MIGNATTNFSDIIVIGERIEYRIKYGRITEATTEYEGIKKGTTSKKKEREVHTVGFPNSGKHKSSFGQKEHEQGFPSYINNVSHVPYNNYVPAHTFSGTP

Query:  KLVNSNSPRPF
        KL+  NSPRPF
Subjt:  KLVNSNSPRPF

A0A5D3CWZ3 Retrotrans_gag domain-containing protein

6.4e-44

80.18

Show/hide

Query:  MIGNATTNFSDIIVIGERIEYRIKYGRITEATTEYEGIKKGTTSKKKEREVHTVGFPNSGKHKSSFGQKEHEQGFPSYINNVSHVPYNNYVPAHTFSGTP
        MIGNA+TNFSDIIVIGERIEY IK+GR+TEATTEY GIKKGT SKKKE EVHT+GFPNSGKHKS FGQ+++EQ FPSYI+NVSH+PYN+YVP HT S TP
Subjt:  MIGNATTNFSDIIVIGERIEYRIKYGRITEATTEYEGIKKGTTSKKKEREVHTVGFPNSGKHKSSFGQKEHEQGFPSYINNVSHVPYNNYVPAHTFSGTP

Query:  KLVNSNSPRPF
        KL+  NSPRPF
Subjt:  KLVNSNSPRPF

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGATTGGTAATGCAACAACGAATTTTTCTGACATTATCGTTATTGGTGAAAGAATTGAATATAGGATAAAGTACGGGAGGATAACAGAGGCTACAACTGAATATGAAGG
AATAAAGAAAGGGACAACATCTAAAAAGAAAGAAAGAGAGGTTCATACAGTTGGTTTTCCTAATTCAGGGAAACACAAATCGAGTTTTGGGCAAAAAGAACATGAGCAAG
GTTTTCCATCATATATAAACAATGTTTCTCATGTCCCTTACAACAACTATGTACCAGCTCACACCTTCTCTGGAACTCCAAAGCTTGTTAACTCAAACTCTCCTCGACCA
TTTGCATAG

mRNA sequence

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Protein sequence

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MIGNATTNFSDIIVIGERIEYRIKYGRITEATTEYEGIKKGTTSKKKEREVHTVGFPNSGKHKSSFGQKEHEQGFPSYINNVSHVPYNNYVPAHTFSGTPKLVNSNSPRP
FA

PI0005585 (gene) of Melon (PI 482460) v1 genome