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PI0005610 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0005610
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Descriptionleucine-rich repeat extensin-like protein 1
Genome locationchr07:23425013..23425468
RNA-Seq ExpressionPI0005610
SyntenyPI0005610
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8649911.1 hypothetical protein Csa_012510 [Cucumis sativus]4.0e-5991.2Show/hide
Query:  MPFLGIRRILGSWGLWIIALALFSASSKAQMAVPSTGQLCISDCSTCPVICTAPPPPRSYI-PPPPNFYGGYNMAPPATPSYYLWGPPPPVANYFLGARP
        MPF G RRILGS+GLWI+A  LFSASSKAQMAVPSTGQLCISDCSTCPVICTAPPPP SYI PPPPNFYGG+NMAPPATPSYYLWGPPPPVANYFLGARP
Subjt:  MPFLGIRRILGSWGLWIIALALFSASSKAQMAVPSTGQLCISDCSTCPVICTAPPPPRSYI-PPPPNFYGGYNMAPPATPSYYLWGPPPPVANYFLGARP

Query:  SGEMPQSAGPRDYSYPYYYFYSSNS
        SGEMPQ+ GPRDYSYPYYYFYSSNS
Subjt:  SGEMPQSAGPRDYSYPYYYFYSSNS

KAG6608366.1 Conserved oligomeric Golgi complex subunit 8, partial [Cucurbita argyrosperma subsp. sororia]1.0e-3866.43Show/hide
Query:  MPFLGIRRILGSWGLWIIALALFSASSKAQMAVPSTGQLCISDCSTCPVICTAPPPPRSY----IPPPPNFYGGYNMAPPA-TPSYYLWGPPPPVANYFL
        MPF G      S GLW++A ALF   S AQ+ VPSTGQLCIS C TCPV+CT  P PRSY     PPPP FYGGY   PPA T SY+L GPPPPVANY  
Subjt:  MPFLGIRRILGSWGLWIIALALFSASSKAQMAVPSTGQLCISDCSTCPVICTAPPPPRSY----IPPPPNFYGGYNMAPPA-TPSYYLWGPPPPVANYFL

Query:  GARPSGEMPQSAGPRDYSYPYYYFYSSNSGSFSYISKFIVLFV
        GA+PSG+MPQ+ GPRDYSYPYYYFYSSN GS S  S FIVL V
Subjt:  GARPSGEMPQSAGPRDYSYPYYYFYSSNSGSFSYISKFIVLFV

XP_022940707.1 leucine-rich repeat extensin-like protein 2 [Cucurbita moschata]5.0e-3865.96Show/hide
Query:  MPFLGIRRILGSWGLWIIALALFSASSKAQMAVPSTGQLCISDCSTCPVICTAPPPPRSY----IPPPPNFYGGYNMAPPA-TPSYYLWGPPPPVANYFL
        MPF G  R   S GLW++A ALF   S AQ+ VPSTGQLCIS C TCPV+CT  P PRSY     PPPP FYGGY   PPA T SY+L GP PPVANY  
Subjt:  MPFLGIRRILGSWGLWIIALALFSASSKAQMAVPSTGQLCISDCSTCPVICTAPPPPRSY----IPPPPNFYGGYNMAPPA-TPSYYLWGPPPPVANYFL

Query:  GARPSGEMPQSAGPRDYSYPYYYFYSSNSGSFSYISKFIVL
        GA+PSG+MPQ+ GPRDYSYPYYYFYSSN GS S    FIVL
Subjt:  GARPSGEMPQSAGPRDYSYPYYYFYSSNSGSFSYISKFIVL

XP_022981722.1 leucine-rich repeat extensin-like protein 1 [Cucurbita maxima]7.0e-4062.75Show/hide
Query:  MPFLGIRRILGSWGLWIIALALFSASSKAQMAVPSTGQLCISDCSTCPVICTAP---PPPRSYI-------PPPPNFYGGYNMAPPA-TPSYYLWGPPPP
        MPF G  R   S GL ++A ALF   S AQ+ VPST QLCIS C TCPV+CT P   P PRSY        PPPP FYGGY   PPA T SY+  GPPPP
Subjt:  MPFLGIRRILGSWGLWIIALALFSASSKAQMAVPSTGQLCISDCSTCPVICTAP---PPPRSYI-------PPPPNFYGGYNMAPPA-TPSYYLWGPPPP

Query:  VANYFLGARPSGEMPQSAGPRDYSYPYYYFYSSNSGSFSYISKFIVLFVCLFH
        VANY  GA+PSG+MPQ+ GPRDYSYPYYYFYSSN GSF+  S FI+LF C FH
Subjt:  VANYFLGARPSGEMPQSAGPRDYSYPYYYFYSSNSGSFSYISKFIVLFVCLFH

XP_023523402.1 leucine-rich repeat extensin-like protein 2 [Cucurbita pepo subsp. pepo]1.1e-3768.94Show/hide
Query:  IALALFSASSKAQMAVPSTGQLCISDCSTCPVICTAPPPPRSY------IPPPPNFYGGYNMAPPA-TPSYYLWGPPPPVANYFLGARPSGEMPQSAGPR
        +A ALF   S AQ+ VPSTGQLCIS C TCPV+CT  P PRSY       PPPP FYGGY   PPA T SY+L GPPPPVANY  GA+PSG+MPQ+ GPR
Subjt:  IALALFSASSKAQMAVPSTGQLCISDCSTCPVICTAPPPPRSY------IPPPPNFYGGYNMAPPA-TPSYYLWGPPPPVANYFLGARPSGEMPQSAGPR

Query:  DYSYPYYYFYSSNSGSFSYISKFIVLFVCLFH
        DYSYPYYYFYSSN GS S  S FIVLFVC FH
Subjt:  DYSYPYYYFYSSNSGSFSYISKFIVLFVCLFH

TrEMBL top hitse value%identityAlignment
A0A0A0L054 Microtubule associated protein (Ase1)1.7e-7189.47Show/hide
Query:  MYRSKTMPFLGIRRILGSWGLWIIALALFSASSKAQMAVPSTGQLCISDCSTCPVICTAPPPPRSYI-PPPPNFYGGYNMAPPATPSYYLWGPPPPVANY
        M  SKTMPF G RRILGS+GLWI+A  LFSASSKAQMAVPSTGQLCISDCSTCPVICTAPPPP SYI PPPPNFYGG+NMAPPATPSYYLWGPPPPVANY
Subjt:  MYRSKTMPFLGIRRILGSWGLWIIALALFSASSKAQMAVPSTGQLCISDCSTCPVICTAPPPPRSYI-PPPPNFYGGYNMAPPATPSYYLWGPPPPVANY

Query:  FLGARPSGEMPQSAGPRDYSYPYYYFYSSNSGSFSYISKFIVLFVCLFHFAL
        FLGARPSGEMPQ+ GPRDYSYPYYYFYSSNSGSF+YISKFIVLFVCL HF L
Subjt:  FLGARPSGEMPQSAGPRDYSYPYYYFYSSNSGSFSYISKFIVLFVCLFHFAL

A0A2N9HA71 Uncharacterized protein1.9e-1943.4Show/hide
Query:  WGLWIIA-LALFSASSKAQMAVPSTGQLCISDCSTCPVICTAPP-----------------PPRSYI--PPPPNFYGGYNMAPPATP----SYYLWGPPP
        W +WI+  L L + +S+ Q+  PS+G LCISDC+TCPVIC+ PP                 PP+SY   PPPP         PPA+P    SY  WG PP
Subjt:  WGLWIIA-LALFSASSKAQMAVPSTGQLCISDCSTCPVICTAPP-----------------PPRSYI--PPPPNFYGGYNMAPPATP----SYYLWGPPP

Query:  PVANYFLGARPSG----EMPQSAGPRDYSYPYYYFYSSNSGSFSYISKFIVLFVCLFHF
        P   YF    PSG     MP  AGP DY YPYYYFYSS + S   +      F+ LF F
Subjt:  PVANYFLGARPSG----EMPQSAGPRDYSYPYYYFYSSNSGSFSYISKFIVLFVCLFHF

A0A438EXB6 U-box domain-containing protein 529.6e-1939.02Show/hide
Query:  GIRRILGSWGLWIIALALFS------ASSKAQMAVPSTGQLCISDCSTCPVICTAPPPPRSYIPP--PPNF------YGGYNMAPPATPS----------
        G+  +   W  W++ + + +        S+ Q  VP TG LCISDC+TCPVIC+ PPPP  Y PP  PP+       Y  ++  PP++PS          
Subjt:  GIRRILGSWGLWIIALALFS------ASSKAQMAVPSTGQLCISDCSTCPVICTAPPPPRSYIPP--PPNF------YGGYNMAPPATPS----------

Query:  --YYLWGPPPPVANYFLGARPSGEMPQSAGPRDYSYPYYYFYSSNSGSFSYISKFIVLFVCLFH
          Y+ W  PPP  NY     PSG  P + G   Y YPYYYFY+SNS S S+ S F +     FH
Subjt:  --YYLWGPPPPVANYFLGARPSGEMPQSAGPRDYSYPYYYFYSSNSGSFSYISKFIVLFVCLFH

A0A6J1FKD3 leucine-rich repeat extensin-like protein 22.4e-3865.96Show/hide
Query:  MPFLGIRRILGSWGLWIIALALFSASSKAQMAVPSTGQLCISDCSTCPVICTAPPPPRSY----IPPPPNFYGGYNMAPPA-TPSYYLWGPPPPVANYFL
        MPF G  R   S GLW++A ALF   S AQ+ VPSTGQLCIS C TCPV+CT  P PRSY     PPPP FYGGY   PPA T SY+L GP PPVANY  
Subjt:  MPFLGIRRILGSWGLWIIALALFSASSKAQMAVPSTGQLCISDCSTCPVICTAPPPPRSY----IPPPPNFYGGYNMAPPA-TPSYYLWGPPPPVANYFL

Query:  GARPSGEMPQSAGPRDYSYPYYYFYSSNSGSFSYISKFIVL
        GA+PSG+MPQ+ GPRDYSYPYYYFYSSN GS S    FIVL
Subjt:  GARPSGEMPQSAGPRDYSYPYYYFYSSNSGSFSYISKFIVL

A0A6J1IUS7 leucine-rich repeat extensin-like protein 13.4e-4062.75Show/hide
Query:  MPFLGIRRILGSWGLWIIALALFSASSKAQMAVPSTGQLCISDCSTCPVICTAP---PPPRSYI-------PPPPNFYGGYNMAPPA-TPSYYLWGPPPP
        MPF G  R   S GL ++A ALF   S AQ+ VPST QLCIS C TCPV+CT P   P PRSY        PPPP FYGGY   PPA T SY+  GPPPP
Subjt:  MPFLGIRRILGSWGLWIIALALFSASSKAQMAVPSTGQLCISDCSTCPVICTAP---PPPRSYI-------PPPPNFYGGYNMAPPA-TPSYYLWGPPPP

Query:  VANYFLGARPSGEMPQSAGPRDYSYPYYYFYSSNSGSFSYISKFIVLFVCLFH
        VANY  GA+PSG+MPQ+ GPRDYSYPYYYFYSSN GSF+  S FI+LF C FH
Subjt:  VANYFLGARPSGEMPQSAGPRDYSYPYYYFYSSNSGSFSYISKFIVLFVCLFH

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G13340.1 Leucine-rich repeat (LRR) family protein5.1e-0439.13Show/hide
Query:  PVICTAPPPPRSYIPPPPNFYGGYNMAPPATPSYYLWGPPPPVANYFLGARPSGEMPQSAGPRDYSYPY
        PV CT PPPP  + PPPP F      +PP    YY   PPPP +     + P    P    P    YPY
Subjt:  PVICTAPPPPRSYIPPPPNFYGGYNMAPPATPSYYLWGPPPPVANYFLGARPSGEMPQSAGPRDYSYPY

AT5G11990.1 proline-rich family protein1.1e-0629.34Show/hide
Query:  GLWIIALALFSASSKAQMAVPSTG---QLCISDCSTCPVICTAP---------PPPRSYI-------PPPPNFYG----GYNMAP--------PATPSYY
        GL +I +AL      A      T     LCIS+CSTCP IC+ P         PPP   +       PPPP+ +       +++P        P  P +Y
Subjt:  GLWIIALALFSASSKAQMAVPSTG---QLCISDCSTCPVICTAP---------PPPRSYI-------PPPPNFYG----GYNMAP--------PATPSYY

Query:  LW---GPPPPVANYFLGARPS------GEMPQSAGPRD--YSYPYYYFYSSNSGSFSYISKFIVLFV
         +    PPPP++    G+ PS          QS G +   Y +PY+YFY++++ +  + S F++  V
Subjt:  LW---GPPPPVANYFLGARPS------GEMPQSAGPRD--YSYPYYYFYSSNSGSFSYISKFIVLFV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTATCGTTCCAAAACGATGCCGTTTCTAGGAATAAGGCGAATTCTTGGCTCTTGGGGACTTTGGATCATCGCATTGGCTTTGTTTTCAGCATCATCCAAAGCCCAAAT
GGCCGTCCCCTCCACCGGACAGCTCTGCATCAGCGATTGCTCCACGTGTCCGGTGATTTGTACGGCGCCGCCTCCTCCACGCTCTTACATTCCGCCTCCGCCCAACTTTT
ACGGTGGGTACAATATGGCGCCGCCGGCTACTCCGTCGTATTATTTATGGGGTCCGCCGCCTCCGGTTGCGAATTATTTTTTGGGCGCACGGCCTTCCGGTGAGATGCCT
CAATCGGCGGGACCTCGGGATTATTCTTACCCTTATTATTATTTCTACAGTTCAAATTCGGGTTCATTCTCTTATATTTCGAAATTCATCGTGTTGTTTGTGTGTTTGTT
TCATTTTGCTTTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGTATCGTTCCAAAACGATGCCGTTTCTAGGAATAAGGCGAATTCTTGGCTCTTGGGGACTTTGGATCATCGCATTGGCTTTGTTTTCAGCATCATCCAAAGCCCAAAT
GGCCGTCCCCTCCACCGGACAGCTCTGCATCAGCGATTGCTCCACGTGTCCGGTGATTTGTACGGCGCCGCCTCCTCCACGCTCTTACATTCCGCCTCCGCCCAACTTTT
ACGGTGGGTACAATATGGCGCCGCCGGCTACTCCGTCGTATTATTTATGGGGTCCGCCGCCTCCGGTTGCGAATTATTTTTTGGGCGCACGGCCTTCCGGTGAGATGCCT
CAATCGGCGGGACCTCGGGATTATTCTTACCCTTATTATTATTTCTACAGTTCAAATTCGGGTTCATTCTCTTATATTTCGAAATTCATCGTGTTGTTTGTGTGTTTGTT
TCATTTTGCTTTGTAA
Protein sequenceShow/hide protein sequence
MYRSKTMPFLGIRRILGSWGLWIIALALFSASSKAQMAVPSTGQLCISDCSTCPVICTAPPPPRSYIPPPPNFYGGYNMAPPATPSYYLWGPPPPVANYFLGARPSGEMP
QSAGPRDYSYPYYYFYSSNSGSFSYISKFIVLFVCLFHFAL